{"id":"https://openalex.org/W2886761756","doi":"https://doi.org/10.1093/bib/bbx039","title":"Improving data workflow systems with cloud services and use of open data for bioinformatics research","display_name":"Improving data workflow systems with cloud services and use of open data for bioinformatics research","publication_year":2017,"publication_date":"2017-03-14","ids":{"openalex":"https://openalex.org/W2886761756","doi":"https://doi.org/10.1093/bib/bbx039","mag":"2886761756","pmid":"https://pubmed.ncbi.nlm.nih.gov/28419324"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbx039","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbx039","pdf_url":"https://academic.oup.com/bib/article-pdf/19/5/1035/25861110/bbx039.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/19/5/1035/25861110/bbx039.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5007534068","display_name":"Md Rezaul Karim","orcid":"https://orcid.org/0000-0001-5461-7709"},"institutions":[{"id":"https://openalex.org/I188760350","display_name":"Ollscoil na Gaillimhe \u2013 University of Galway","ror":"https://ror.org/03bea9k73","country_code":"IE","type":"education","lineage":["https://openalex.org/I188760350"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Md Rezaul Karim","raw_affiliation_strings":["Semantics in eHealth and Life Sciences (SeLS), Insight Centre for Data Analytics, National University of Ireland, Galway, Ireland"],"affiliations":[{"raw_affiliation_string":"Semantics in eHealth and Life Sciences (SeLS), Insight Centre for Data Analytics, National University of Ireland, Galway, Ireland","institution_ids":["https://openalex.org/I188760350"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036275458","display_name":"Audrey M. Michel","orcid":"https://orcid.org/0000-0002-6421-7036"},"institutions":[{"id":"https://openalex.org/I27577105","display_name":"University College Cork","ror":"https://ror.org/03265fv13","country_code":"IE","type":"education","lineage":["https://openalex.org/I27577105"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Audrey Michel","raw_affiliation_strings":["School of Biochemistry and Cell Biology, University College Cork, Ireland"],"affiliations":[{"raw_affiliation_string":"School of Biochemistry and Cell Biology, University College Cork, Ireland","institution_ids":["https://openalex.org/I27577105"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034664449","display_name":"Achille Zappa","orcid":"https://orcid.org/0000-0003-4040-9620"},"institutions":[{"id":"https://openalex.org/I188760350","display_name":"Ollscoil na Gaillimhe \u2013 University of Galway","ror":"https://ror.org/03bea9k73","country_code":"IE","type":"education","lineage":["https://openalex.org/I188760350"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Achille Zappa","raw_affiliation_strings":["Insight Centre for Data Analytics, National University of Ireland Galway, Dangan, Galway, Ireland"],"affiliations":[{"raw_affiliation_string":"Insight Centre for Data Analytics, National University of Ireland Galway, Dangan, Galway, Ireland","institution_ids":["https://openalex.org/I188760350"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047187282","display_name":"Pavel V. Baranov","orcid":"https://orcid.org/0000-0001-9017-0270"},"institutions":[{"id":"https://openalex.org/I27577105","display_name":"University College Cork","ror":"https://ror.org/03265fv13","country_code":"IE","type":"education","lineage":["https://openalex.org/I27577105"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Pavel Baranov","raw_affiliation_strings":["School of Biochemistry and Cell Biology, University College Cork, Ireland"],"affiliations":[{"raw_affiliation_string":"School of Biochemistry and Cell Biology, University College Cork, Ireland","institution_ids":["https://openalex.org/I27577105"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058460371","display_name":"Ratnesh Sahay","orcid":"https://orcid.org/0000-0003-4864-4174"},"institutions":[{"id":"https://openalex.org/I188760350","display_name":"Ollscoil na Gaillimhe \u2013 University of Galway","ror":"https://ror.org/03bea9k73","country_code":"IE","type":"education","lineage":["https://openalex.org/I188760350"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Ratnesh Sahay","raw_affiliation_strings":["Semantics in eHealth and Life Sciences (SeLS), Insight Centre for Data Analytics, National University of Ireland, Galway, Ireland"],"affiliations":[{"raw_affiliation_string":"Semantics in eHealth and Life Sciences (SeLS), Insight Centre for Data Analytics, National University of Ireland, Galway, Ireland","institution_ids":["https://openalex.org/I188760350"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5006224704","display_name":"Dietrich Rebholz\u2010Schuhmann","orcid":"https://orcid.org/0000-0002-1018-0370"},"institutions":[{"id":"https://openalex.org/I188760350","display_name":"Ollscoil na Gaillimhe \u2013 University of Galway","ror":"https://ror.org/03bea9k73","country_code":"IE","type":"education","lineage":["https://openalex.org/I188760350"]}],"countries":["IE"],"is_corresponding":true,"raw_author_name":"Dietrich Rebholz-Schuhmann","raw_affiliation_strings":["Insight Centre for Data Analytics, National University of Ireland Galway, Dangan, Galway, Ireland"],"affiliations":[{"raw_affiliation_string":"Insight Centre for Data Analytics, National University of Ireland Galway, Dangan, Galway, Ireland","institution_ids":["https://openalex.org/I188760350"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5006224704"],"corresponding_institution_ids":["https://openalex.org/I188760350"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":12.4244,"has_fulltext":true,"cited_by_count":23,"citation_normalized_percentile":{"value":0.98344976,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"19","issue":"5","first_page":"1035","last_page":"1050"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.9927999973297119,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9796000123023987,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.7807266712188721},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7718687057495117},{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.7414115071296692},{"id":"https://openalex.org/keywords/analytics","display_name":"Analytics","score":0.594257652759552},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5900298953056335},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.5738008618354797},{"id":"https://openalex.org/keywords/data-management","display_name":"Data management","score":0.5457290410995483},{"id":"https://openalex.org/keywords/big-data","display_name":"Big data","score":0.453479528427124},{"id":"https://openalex.org/keywords/data-access","display_name":"Data access","score":0.42711153626441956},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.37761014699935913},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3242090940475464},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.24141305685043335}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.7807266712188721},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7718687057495117},{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.7414115071296692},{"id":"https://openalex.org/C79158427","wikidata":"https://www.wikidata.org/wiki/Q485396","display_name":"Analytics","level":2,"score":0.594257652759552},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5900298953056335},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.5738008618354797},{"id":"https://openalex.org/C1668388","wikidata":"https://www.wikidata.org/wiki/Q1149776","display_name":"Data management","level":2,"score":0.5457290410995483},{"id":"https://openalex.org/C75684735","wikidata":"https://www.wikidata.org/wiki/Q858810","display_name":"Big data","level":2,"score":0.453479528427124},{"id":"https://openalex.org/C47487241","wikidata":"https://www.wikidata.org/wiki/Q5227230","display_name":"Data access","level":2,"score":0.42711153626441956},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.37761014699935913},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3242090940475464},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.24141305685043335},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000067917","descriptor_name":"Cloud Computing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000067917","descriptor_name":"Cloud Computing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000067917","descriptor_name":"Cloud Computing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000075403","descriptor_name":"Semantic Web","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D000075403","descriptor_name":"Semantic Web","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D000075403","descriptor_name":"Semantic Web","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D000077558","descriptor_name":"Big Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077558","descriptor_name":"Big Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077558","descriptor_name":"Big Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1093/bib/bbx039","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbx039","pdf_url":"https://academic.oup.com/bib/article-pdf/19/5/1035/25861110/bbx039.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:28419324","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28419324","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:cora.ucc.ie:10468/8487","is_oa":true,"landing_page_url":"http://hdl.handle.net/10468/8487","pdf_url":null,"source":{"id":"https://openalex.org/S4306400766","display_name":"Cork Open Research Archive (University College Cork)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I27577105","host_organization_name":"University College Cork","host_organization_lineage":["https://openalex.org/I27577105"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:https://researchrepository.universityofgalway.ie:10379/7447","is_oa":true,"landing_page_url":"http://hdl.handle.net/10379/7447","pdf_url":"http://hdl.handle.net/10379/7447","source":{"id":"https://openalex.org/S4377196322","display_name":"ARAN (University of Galway Research Repository) (Ollscoil na Gaillimhe \u2013 University of Galway)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I188760350","host_organization_name":"Ollscoil na Gaillimhe \u2013 University of Galway","host_organization_lineage":["https://openalex.org/I188760350"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"journal article"},{"id":"pmh:oai:europepmc.org:5127494","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC6169675","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:6169675","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6169675","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbx039","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbx039","pdf_url":"https://academic.oup.com/bib/article-pdf/19/5/1035/25861110/bbx039.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.6299999952316284,"id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G1383882326","display_name":null,"funder_award_id":"SFI/12/RC/","funder_id":"https://openalex.org/F4320320847","funder_display_name":"Science Foundation Ireland"},{"id":"https://openalex.org/G2881606312","display_name":null,"funder_award_id":"SFI/12/RC/2289","funder_id":"https://openalex.org/F4320320847","funder_display_name":"Science Foundation Ireland"},{"id":"https://openalex.org/G5098725405","display_name":null,"funder_award_id":"12/RC/","funder_id":"https://openalex.org/F4320320847","funder_display_name":"Science Foundation Ireland"}],"funders":[{"id":"https://openalex.org/F4320320847","display_name":"Science Foundation Ireland","ror":"https://ror.org/0271asj38"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2886761756.pdf","grobid_xml":"https://content.openalex.org/works/W2886761756.grobid-xml"},"referenced_works_count":102,"referenced_works":["https://openalex.org/W85648037","https://openalex.org/W150760603","https://openalex.org/W630785681","https://openalex.org/W1021987000","https://openalex.org/W1480875294","https://openalex.org/W1514347489","https://openalex.org/W1536893558","https://openalex.org/W1578104218","https://openalex.org/W1599730737","https://openalex.org/W1631109438","https://openalex.org/W1670903213","https://openalex.org/W1926851645","https://openalex.org/W1932512987","https://openalex.org/W1966517122","https://openalex.org/W1967225297","https://openalex.org/W1969389753","https://openalex.org/W1979142801","https://openalex.org/W1983833794","https://openalex.org/W2000528034","https://openalex.org/W2000729083","https://openalex.org/W2007550282","https://openalex.org/W2013434113","https://openalex.org/W2024808072","https://openalex.org/W2025190248","https://openalex.org/W2029052036","https://openalex.org/W2033237963","https://openalex.org/W2038733937","https://openalex.org/W2039605938","https://openalex.org/W2040022355","https://openalex.org/W2041686632","https://openalex.org/W2042911059","https://openalex.org/W2067520428","https://openalex.org/W2073308643","https://openalex.org/W2077210509","https://openalex.org/W2078085943","https://openalex.org/W2088844870","https://openalex.org/W2096525273","https://openalex.org/W2096766502","https://openalex.org/W2097126585","https://openalex.org/W2100428244","https://openalex.org/W2101525042","https://openalex.org/W2107223852","https://openalex.org/W2113310608","https://openalex.org/W2115570304","https://openalex.org/W2118776984","https://openalex.org/W2118953105","https://openalex.org/W2119412782","https://openalex.org/W2121009816","https://openalex.org/W2124679016","https://openalex.org/W2127279146","https://openalex.org/W2128548442","https://openalex.org/W2129666400","https://openalex.org/W2129702158","https://openalex.org/W2132986056","https://openalex.org/W2136207878","https://openalex.org/W2136482257","https://openalex.org/W2136714878","https://openalex.org/W2140157849","https://openalex.org/W2141195725","https://openalex.org/W2141615601","https://openalex.org/W2146144840","https://openalex.org/W2146917903","https://openalex.org/W2147714160","https://openalex.org/W2147869723","https://openalex.org/W2151718715","https://openalex.org/W2151975141","https://openalex.org/W2154513453","https://openalex.org/W2154592269","https://openalex.org/W2155663962","https://openalex.org/W2155741020","https://openalex.org/W2156166905","https://openalex.org/W2159749953","https://openalex.org/W2162832420","https://openalex.org/W2165428180","https://openalex.org/W2168103533","https://openalex.org/W2169594074","https://openalex.org/W2172143128","https://openalex.org/W2183646828","https://openalex.org/W2223713809","https://openalex.org/W2271773999","https://openalex.org/W2323034105","https://openalex.org/W2397292972","https://openalex.org/W2412403016","https://openalex.org/W2495255579","https://openalex.org/W2594899909","https://openalex.org/W2911756228","https://openalex.org/W3151050225","https://openalex.org/W4230784961","https://openalex.org/W4237629094","https://openalex.org/W4237848409","https://openalex.org/W4241239737","https://openalex.org/W4248234957","https://openalex.org/W4297970464","https://openalex.org/W6606142028","https://openalex.org/W6635751552","https://openalex.org/W6641713229","https://openalex.org/W6677735700","https://openalex.org/W6678253323","https://openalex.org/W6679517723","https://openalex.org/W6681624421","https://openalex.org/W6682613611","https://openalex.org/W6715278394"],"related_works":["https://openalex.org/W4390608645","https://openalex.org/W4247566972","https://openalex.org/W2960264696","https://openalex.org/W3090563135","https://openalex.org/W2497432351","https://openalex.org/W4206777497","https://openalex.org/W4233347783","https://openalex.org/W2463183163","https://openalex.org/W2019038080","https://openalex.org/W1587608488"],"abstract_inverted_index":{"Data":[0],"workflow":[1],"systems":[2,29],"(DWFSs)":[3],"enable":[4],"bioinformatics":[5,115,142,228,257],"researchers":[6,125],"to":[7,17,31,69,96,104,174,201,233,244],"combine":[8],"components":[9],"for":[10,132,147,157,169,222,227,255],"data":[11,14,21,55,63,79,87,120,138,170,207],"access":[12,173],"and":[13,16,52,110,121,149,159,172,214,237,247],"analytics,":[15],"share":[18],"the":[19,62,66,78,84,93,112,133,136,145,163,182,196,220,250,256],"final":[20],"analytics":[22],"approach":[23],"with":[24,33,98,184,199,230],"their":[25,202],"collaborators.":[26],"Increasingly,":[27],"such":[28,36],"have":[30],"cope":[32],"large-scale":[34,119,212],"data,":[35],"as":[37,124,209,211],"full":[38],"genomes":[39],"(about":[40,47],"200":[41],"GB":[42],"each),":[43],"public":[44,86,122,175,205],"fact":[45],"repositories":[46],"100":[48],"TB":[49],"of":[50,181,252],"data)":[51],"3D":[53],"imaging":[54],"at":[56],"even":[57],"larger":[58],"scales.":[59],"As":[60,83,165],"moving":[61],"becomes":[64],"cumbersome,":[65],"DWFS":[67,94,105,183,198,254],"needs":[68,95],"embed":[70],"its":[71],"processes":[72],"into":[73],"a":[74,155,166,224],"cloud":[75,235],"infrastructure,":[76],"where":[77],"are":[80],"already":[81],"hosted.":[82],"standardized":[85],"play":[88],"an":[89],"increasingly":[90],"important":[91],"role,":[92],"comply":[97],"Semantic":[99,185,238],"Web":[100,186,239],"technologies.":[101,240],"This":[102],"advancement":[103],"would":[106,126],"reduce":[107],"overhead":[108],"costs":[109],"accelerate":[111],"progress":[113],"in":[114,141],"research":[116,143,229,245,258],"based":[117],"on":[118],"resources,":[123],"require":[127],"less":[128],"specialized":[129],"IT":[130],"knowledge":[131,176],"implementation.":[134],"Furthermore,":[135],"high":[137],"growth":[139],"rates":[140],"drive":[144],"demand":[146],"parallel":[148],"distributed":[150],"computing,":[151],"which":[152],"then":[153],"imposes":[154],"need":[156],"scalability":[158],"high-throughput":[160],"capabilities":[161,203],"onto":[162],"DWFS.":[164],"result,":[167],"requirements":[168],"sharing":[171],"bases":[177],"suggest":[178],"that":[179],"compliance":[180],"standards":[187],"is":[188],"necessary.":[189],"In":[190],"this":[191],"article,":[192],"we":[193],"will":[194],"analyze":[195],"existing":[197],"regard":[200],"toward":[204,249],"open":[206],"use":[208],"well":[210],"computational":[213],"human":[215],"interface":[216],"requirements.":[217],"We":[218],"untangle":[219],"parameters":[221],"selecting":[223],"preferable":[225],"solution":[226],"particular":[231],"consideration":[232],"using":[234],"services":[236],"Our":[241],"analysis":[242],"leads":[243],"guidelines":[246],"recommendations":[248],"development":[251],"future":[253],"community.":[259]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
