{"id":"https://openalex.org/W2605099106","doi":"https://doi.org/10.1093/bib/bbx035","title":"The anatomy of phenotype ontologies: principles, properties and applications","display_name":"The anatomy of phenotype ontologies: principles, properties and applications","publication_year":2017,"publication_date":"2017-03-07","ids":{"openalex":"https://openalex.org/W2605099106","doi":"https://doi.org/10.1093/bib/bbx035","mag":"2605099106","pmid":"https://pubmed.ncbi.nlm.nih.gov/28387809"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbx035","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbx035","pdf_url":"https://academic.oup.com/bib/article-pdf/19/5/1008/25861258/bbx035.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bib/article-pdf/19/5/1008/25861258/bbx035.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5089900113","display_name":"Georgios V. Gkoutos","orcid":"https://orcid.org/0000-0002-2061-091X"},"institutions":[{"id":"https://openalex.org/I79619799","display_name":"University of Birmingham","ror":"https://ror.org/03angcq70","country_code":"GB","type":"education","lineage":["https://openalex.org/I79619799"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Georgios V Gkoutos","raw_affiliation_strings":["University of Birmingham Medical School"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Birmingham Medical School","institution_ids":["https://openalex.org/I79619799"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059588755","display_name":"Paul N. Schofield","orcid":"https://orcid.org/0000-0002-5111-7263"},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Paul N Schofield","raw_affiliation_strings":["University of Cambridge"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Cambridge","institution_ids":["https://openalex.org/I241749"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5043808311","display_name":"Robert Hoehndorf","orcid":"https://orcid.org/0000-0001-8149-5890"},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":true,"raw_author_name":"Robert Hoehndorf","raw_affiliation_strings":["Computer, Electrical and Mathematical Sciences and Engineering Division, King Abdullah University of Science and Technology, King Abdullah University of Science and Technology, Thuwal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer, Electrical and Mathematical Sciences and Engineering Division, King Abdullah University of Science and Technology, King Abdullah University of Science and Technology, Thuwal","institution_ids":["https://openalex.org/I71920554"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5043808311"],"corresponding_institution_ids":["https://openalex.org/I71920554"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":5.0676,"has_fulltext":true,"cited_by_count":115,"citation_normalized_percentile":{"value":0.96505148,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"19","issue":"5","first_page":"1008","last_page":"1021"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9948999881744385,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9797999858856201,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.7765167355537415},{"id":"https://openalex.org/keywords/phenotype","display_name":"Phenotype","score":0.6609975099563599},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5804774761199951},{"id":"https://openalex.org/keywords/open-biomedical-ontologies","display_name":"Open Biomedical Ontologies","score":0.531830370426178},{"id":"https://openalex.org/keywords/trait","display_name":"Trait","score":0.5008432865142822},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4680934250354767},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.45083534717559814},{"id":"https://openalex.org/keywords/phenomics","display_name":"Phenomics","score":0.41879671812057495},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.41719380021095276},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.4110150635242462},{"id":"https://openalex.org/keywords/ontology-based-data-integration","display_name":"Ontology-based data integration","score":0.32418590784072876},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3018021881580353},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.2979893982410431},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.29342132806777954},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.27749115228652954},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.27354127168655396},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.140234112739563},{"id":"https://openalex.org/keywords/ontology-alignment","display_name":"Ontology alignment","score":0.13251802325248718},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1225089430809021},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.10185489058494568},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.09047681093215942}],"concepts":[{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.7765167355537415},{"id":"https://openalex.org/C127716648","wikidata":"https://www.wikidata.org/wiki/Q104053","display_name":"Phenotype","level":3,"score":0.6609975099563599},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5804774761199951},{"id":"https://openalex.org/C137982476","wikidata":"https://www.wikidata.org/wiki/Q7072326","display_name":"Open Biomedical Ontologies","level":5,"score":0.531830370426178},{"id":"https://openalex.org/C106934330","wikidata":"https://www.wikidata.org/wiki/Q1971873","display_name":"Trait","level":2,"score":0.5008432865142822},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4680934250354767},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.45083534717559814},{"id":"https://openalex.org/C98108635","wikidata":"https://www.wikidata.org/wiki/Q6497275","display_name":"Phenomics","level":5,"score":0.41879671812057495},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.41719380021095276},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.4110150635242462},{"id":"https://openalex.org/C22550185","wikidata":"https://www.wikidata.org/wiki/Q7095047","display_name":"Ontology-based data integration","level":3,"score":0.32418590784072876},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3018021881580353},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2979893982410431},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.29342132806777954},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.27749115228652954},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.27354127168655396},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.140234112739563},{"id":"https://openalex.org/C98893333","wikidata":"https://www.wikidata.org/wiki/Q4339878","display_name":"Ontology alignment","level":4,"score":0.13251802325248718},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1225089430809021},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.10185489058494568},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.09047681093215942},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000075403","descriptor_name":"Semantic Web","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000075403","descriptor_name":"Semantic Web","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000075403","descriptor_name":"Semantic Web","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000829","descriptor_name":"Animals, Domestic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000829","descriptor_name":"Animals, Domestic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000829","descriptor_name":"Animals, Domestic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004463","descriptor_name":"Ecology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004463","descriptor_name":"Ecology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004463","descriptor_name":"Ecology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005075","descriptor_name":"Biological Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005075","descriptor_name":"Biological Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005075","descriptor_name":"Biological Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D044822","descriptor_name":"Biodiversity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D044822","descriptor_name":"Biodiversity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D044822","descriptor_name":"Biodiversity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false}],"locations_count":10,"locations":[{"id":"doi:10.1093/bib/bbx035","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbx035","pdf_url":"https://academic.oup.com/bib/article-pdf/19/5/1008/25861258/bbx035.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:28387809","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28387809","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:aber.ac.uk:publications/8bba0962-6eb9-498f-9061-bf3382249f72","is_oa":true,"landing_page_url":null,"pdf_url":"https://pure.aber.ac.uk/portal/en/publications/the-anatomy-of-phenotype-ontologies-principles-properties-and-applications(8bba0962-6eb9-498f-9061-bf3382249f72).html","source":{"id":"https://openalex.org/S4306401660","display_name":"Aberystwyth Research portal (Aberystwyth University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I16038530","host_organization_name":"Aberystwyth University","host_organization_lineage":["https://openalex.org/I16038530"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""},{"id":"pmh:oai:europepmc.org:5127493","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC6169674","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:6169674","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6169674","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/4233fee0-ecfc-4c25-887c-44d2aeba80a9","is_oa":true,"landing_page_url":"https://research.birmingham.ac.uk/en/publications/4233fee0-ecfc-4c25-887c-44d2aeba80a9","pdf_url":null,"source":{"id":"https://openalex.org/S4306402634","display_name":"University of Birmingham Research Portal (University of Birmingham)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I79619799","host_organization_name":"University of Birmingham","host_organization_lineage":["https://openalex.org/I79619799"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Gkoutos, G V, Schofield, P N & Hoehndorf, R 2017, 'The anatomy of phenotype ontologies : principles, properties and applications', Briefings in Bioinformatics. https://doi.org/10.1093/bib/bbx035","raw_type":"article"},{"id":"pmh:oai:pure.atira.dk:publications/4233fee0-ecfc-4c25-887c-44d2aeba80a9","is_oa":true,"landing_page_url":"https://research.birmingham.ac.uk/portal/en/publications/the-anatomy-of-phenotype-ontologies(4233fee0-ecfc-4c25-887c-44d2aeba80a9).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306402634","display_name":"University of Birmingham Research Portal (University of Birmingham)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I79619799","host_organization_name":"University of Birmingham","host_organization_lineage":["https://openalex.org/I79619799"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""},{"id":"pmh:oai:repository.kaust.edu.sa:10754/629373","is_oa":true,"landing_page_url":"http://hdl.handle.net/10754/629373","pdf_url":null,"source":{"id":"https://openalex.org/S4306401596","display_name":"King Abdullah University of Science and Technology Repository (King Abdullah University of Science and Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I71920554","host_organization_name":"King Abdullah University of Science and Technology","host_organization_lineage":["https://openalex.org/I71920554"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:www.repository.cam.ac.uk:1810/264437","is_oa":true,"landing_page_url":"https://www.repository.cam.ac.uk/handle/1810/264437","pdf_url":null,"source":{"id":"https://openalex.org/S4306401777","display_name":"Apollo (University of Cambridge)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I241749","host_organization_name":"University of Cambridge","host_organization_lineage":["https://openalex.org/I241749"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"},{"id":"doi:10.17863/cam.9914","is_oa":true,"landing_page_url":"https://doi.org/10.17863/cam.9914","pdf_url":null,"source":{"id":"https://openalex.org/S7407050737","display_name":"Apollo","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"JournalArticle"}],"best_oa_location":{"id":"doi:10.1093/bib/bbx035","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbx035","pdf_url":"https://academic.oup.com/bib/article-pdf/19/5/1008/25861258/bbx035.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1382428613","display_name":null,"funder_award_id":"BBS/OS/GC/000011C","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G1843754208","display_name":"National Plant Phenomics Centre","funder_award_id":"BBS/E/W/10961A01","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G476251407","display_name":"BBSRC-NCG in Plant Phenotyping","funder_award_id":"BBS/E/W/0012844A","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G4937468798","display_name":null,"funder_award_id":"H2020","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G5627136915","display_name":null,"funder_award_id":"BBS/E/W/0012844A","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G5828286889","display_name":"cROP:   Common Reference Ontologies and Applications for Plant Biology","funder_award_id":"1340112","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5948631762","display_name":null,"funder_award_id":"BBS/E/W/10961A01","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G71902364","display_name":"Data management and access to resources","funder_award_id":"BBS/OS/GC/000011C","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G7230862021","display_name":null,"funder_award_id":"731075","funder_id":"https://openalex.org/F4320332999","funder_display_name":"Horizon 2020 Framework Programme"},{"id":"https://openalex.org/G7853248445","display_name":"OpenRiskNet: Open e-Infrastructure to Support Data Sharing, Knowledge Integration and in silico Analysis and Modelling in Risk Assessment","funder_award_id":"731075","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8844222458","display_name":null,"funder_award_id":"IOS:1340112","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320322320","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38"},{"id":"https://openalex.org/F4320332999","display_name":"Horizon 2020 Framework Programme","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2605099106.pdf","grobid_xml":"https://content.openalex.org/works/W2605099106.grobid-xml"},"referenced_works_count":160,"referenced_works":["https://openalex.org/W102398446","https://openalex.org/W219961879","https://openalex.org/W762501897","https://openalex.org/W1555563750","https://openalex.org/W1564494788","https://openalex.org/W1566952502","https://openalex.org/W1802346448","https://openalex.org/W1866082553","https://openalex.org/W1871852719","https://openalex.org/W1964255443","https://openalex.org/W1974896839","https://openalex.org/W1993617695","https://openalex.org/W1994474588","https://openalex.org/W2002507929","https://openalex.org/W2003023097","https://openalex.org/W2004694692","https://openalex.org/W2007117925","https://openalex.org/W2012361142","https://openalex.org/W2017247892","https://openalex.org/W2021074129","https://openalex.org/W2022451103","https://openalex.org/W2025349319","https://openalex.org/W2028043278","https://openalex.org/W2029054018","https://openalex.org/W2029818367","https://openalex.org/W2034639274","https://openalex.org/W2035679275","https://openalex.org/W2040712196","https://openalex.org/W2041073071","https://openalex.org/W2048024098","https://openalex.org/W2051075975","https://openalex.org/W2058906214","https://openalex.org/W2065853059","https://openalex.org/W2070079971","https://openalex.org/W2073543067","https://openalex.org/W2079121387","https://openalex.org/W2080770151","https://openalex.org/W2082626147","https://openalex.org/W2083578450","https://openalex.org/W2087698552","https://openalex.org/W2087779040","https://openalex.org/W2090950329","https://openalex.org/W2097877306","https://openalex.org/W2098440497","https://openalex.org/W2098593813","https://openalex.org/W2099363565","https://openalex.org/W2099685256","https://openalex.org/W2100482380","https://openalex.org/W2100490186","https://openalex.org/W2102858230","https://openalex.org/W2103017472","https://openalex.org/W2103260426","https://openalex.org/W2106350001","https://openalex.org/W2110233415","https://openalex.org/W2111299816","https://openalex.org/W2112466127","https://openalex.org/W2113105800","https://openalex.org/W2113142309","https://openalex.org/W2113310608","https://openalex.org/W2116034137","https://openalex.org/W2116807975","https://openalex.org/W2117243134","https://openalex.org/W2117499974","https://openalex.org/W2120534674","https://openalex.org/W2121671360","https://openalex.org/W2122245399","https://openalex.org/W2124045889","https://openalex.org/W2124929446","https://openalex.org/W2124991490","https://openalex.org/W2125004669","https://openalex.org/W2126434293","https://openalex.org/W2127006085","https://openalex.org/W2128365672","https://openalex.org/W2129563923","https://openalex.org/W2130416870","https://openalex.org/W2131084949","https://openalex.org/W2131660156","https://openalex.org/W2133109597","https://openalex.org/W2133550211","https://openalex.org/W2135140530","https://openalex.org/W2136265964","https://openalex.org/W2136291980","https://openalex.org/W2136410628","https://openalex.org/W2137052779","https://openalex.org/W2139315672","https://openalex.org/W2141201603","https://openalex.org/W2142096740","https://openalex.org/W2142572836","https://openalex.org/W2143666974","https://openalex.org/W2143943547","https://openalex.org/W2144086069","https://openalex.org/W2146495783","https://openalex.org/W2147018385","https://openalex.org/W2147834895","https://openalex.org/W2150417477","https://openalex.org/W2150838562","https://openalex.org/W2151579561","https://openalex.org/W2152722232","https://openalex.org/W2152850487","https://openalex.org/W2152889283","https://openalex.org/W2153456016","https://openalex.org/W2154140021","https://openalex.org/W2154866190","https://openalex.org/W2155370454","https://openalex.org/W2156622158","https://openalex.org/W2157079123","https://openalex.org/W2158191506","https://openalex.org/W2159583324","https://openalex.org/W2162361752","https://openalex.org/W2162584119","https://openalex.org/W2162891889","https://openalex.org/W2163109444","https://openalex.org/W2163685645","https://openalex.org/W2163965551","https://openalex.org/W2165428180","https://openalex.org/W2170282111","https://openalex.org/W2173974746","https://openalex.org/W2177375219","https://openalex.org/W2178026535","https://openalex.org/W2214711630","https://openalex.org/W2216030004","https://openalex.org/W2244718251","https://openalex.org/W2252448679","https://openalex.org/W2261387751","https://openalex.org/W2304023334","https://openalex.org/W2318368071","https://openalex.org/W2320534681","https://openalex.org/W2362413812","https://openalex.org/W2398222005","https://openalex.org/W2405275595","https://openalex.org/W2407174002","https://openalex.org/W2410119857","https://openalex.org/W2410696340","https://openalex.org/W2465309725","https://openalex.org/W2482377684","https://openalex.org/W2490180896","https://openalex.org/W2547991767","https://openalex.org/W2550086694","https://openalex.org/W2557385283","https://openalex.org/W2558643140","https://openalex.org/W2558838260","https://openalex.org/W2559482520","https://openalex.org/W2560405247","https://openalex.org/W2565503682","https://openalex.org/W2604910784","https://openalex.org/W2615447451","https://openalex.org/W2918064359","https://openalex.org/W2946553200","https://openalex.org/W3099272318","https://openalex.org/W3146347964","https://openalex.org/W4234674830","https://openalex.org/W4237189493","https://openalex.org/W4244562848","https://openalex.org/W4254724633","https://openalex.org/W4384571934","https://openalex.org/W6652229373","https://openalex.org/W6674867552","https://openalex.org/W6676813749","https://openalex.org/W6688672644","https://openalex.org/W6713841166"],"related_works":["https://openalex.org/W2307569040","https://openalex.org/W2360976705","https://openalex.org/W2131941936","https://openalex.org/W2366067673","https://openalex.org/W1976716227","https://openalex.org/W2144482357","https://openalex.org/W756990636","https://openalex.org/W72173000","https://openalex.org/W1506177826","https://openalex.org/W4230386043"],"abstract_inverted_index":{"The":[0,122],"past":[1],"decade":[2],"has":[3,50,141],"seen":[4],"an":[5],"explosion":[6],"in":[7,13,65,103],"the":[8,28,33,59,66,70,77,100,104,113,153,163,168,174],"collection":[9],"of":[10,30,48,62,72,83,106,117,134,157,167,177],"genotype":[11],"data":[12,64,120,138],"domains":[14],"as":[15,17],"diverse":[16],"medicine,":[18],"ecology,":[19],"livestock":[20],"and":[21,92,115,136,140,155,165,180],"plant":[22],"breeding.":[23],"Along":[24],"with":[25,32],"this":[26],"comes":[27],"challenge":[29],"dealing":[31],"related":[34],"phenotype":[35,74,78,158,172,178],"data,":[36],"which":[37],"is":[38],"not":[39],"only":[40],"large":[41,81,118],"but":[42],"also":[43],"highly":[44],"multidimensional.":[45],"Computational":[46],"analysis":[47,75,116,156],"phenotypes":[49,135],"therefore":[51],"become":[52],"critical":[53],"for":[54,112,131,152],"our":[55,147],"ability":[56,148],"to":[57,143,146,149,171],"understand":[58],"biological":[60,67],"meaning":[61],"genomic":[63],"sciences.":[68],"At":[69],"heart":[71],"computational":[73],"are":[76,94],"ontologies.":[79],"A":[80],"number":[82],"these":[84,107],"ontologies":[85,108,179],"have":[86],"been":[87],"developed":[88],"across":[89],"many":[90],"domains,":[91],"we":[93,161],"now":[95],"at":[96],"a":[97,129],"point":[98],"where":[99],"knowledge":[101],"captured":[102],"structure":[105],"can":[109,184],"be":[110,144,185],"used":[111,186],"integration":[114,154],"interrelated":[119],"sets.":[121],"Phenotype":[123],"And":[124],"Trait":[125],"Ontology":[126],"framework":[127],"provides":[128],"method":[130],"formal":[132,175],"definitions":[133],"associated":[137],"sets":[139],"proved":[142],"key":[145],"develop":[150],"methods":[151],"data.":[159],"Here,":[160],"describe":[162],"development":[164],"products":[166],"ontological":[169],"approach":[170],"capture,":[173],"content":[176,183],"how":[181],"their":[182],"computationally.":[187]},"counts_by_year":[{"year":2026,"cited_by_count":8},{"year":2025,"cited_by_count":14},{"year":2024,"cited_by_count":12},{"year":2023,"cited_by_count":18},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":11},{"year":2020,"cited_by_count":18},{"year":2019,"cited_by_count":10},{"year":2018,"cited_by_count":17},{"year":2017,"cited_by_count":5}],"updated_date":"2026-07-25T15:57:00.446498","created_date":"2025-10-10T00:00:00"}
