{"id":"https://openalex.org/W2590535882","doi":"https://doi.org/10.1093/bib/bbx006","title":"Molecular dynamics recipes for genome research","display_name":"Molecular dynamics recipes for genome research","publication_year":2017,"publication_date":"2017-01-04","ids":{"openalex":"https://openalex.org/W2590535882","doi":"https://doi.org/10.1093/bib/bbx006","mag":"2590535882","pmid":"https://pubmed.ncbi.nlm.nih.gov/28334084"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbx006","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbx006","pdf_url":"https://academic.oup.com/bib/article-pdf/19/5/853/25861152/bbx006.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/19/5/853/25861152/bbx006.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5022257092","display_name":"Tommaso Biagini","orcid":"https://orcid.org/0000-0002-4539-028X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Tommaso Biagini","raw_affiliation_strings":["Cellular and Molecular Biology"],"affiliations":[{"raw_affiliation_string":"Cellular and Molecular Biology","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053356041","display_name":"Giovanni Chillemi","orcid":"https://orcid.org/0000-0003-3901-6926"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Giovanni Chillemi","raw_affiliation_strings":["Biochemistry and Molecular Biology"],"affiliations":[{"raw_affiliation_string":"Biochemistry and Molecular Biology","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030238472","display_name":"Gianluigi Mazzoccoli","orcid":"https://orcid.org/0000-0003-3535-7635"},"institutions":[{"id":"https://openalex.org/I2799866671","display_name":"American Physiological Society","ror":"https://ror.org/01y68k842","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2799866671"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gianluigi Mazzoccoli","raw_affiliation_strings":["American Physiological Society"],"affiliations":[{"raw_affiliation_string":"American Physiological Society","institution_ids":["https://openalex.org/I2799866671"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077772772","display_name":"Alessandro Grottesi","orcid":"https://orcid.org/0000-0002-2168-5075"},"institutions":[{"id":"https://openalex.org/I4210088701","display_name":"Centro de Investigaci\u00f3n Docencia y Consultoria Administrativa","ror":"https://ror.org/007drf487","country_code":"CO","type":"other","lineage":["https://openalex.org/I4210088701"]},{"id":"https://openalex.org/I4210119786","display_name":"Cineca","ror":"https://ror.org/02f013h18","country_code":"IT","type":"other","lineage":["https://openalex.org/I4210119786"]}],"countries":["CO","IT"],"is_corresponding":false,"raw_author_name":"Alessandro Grottesi","raw_affiliation_strings":["Cineca Specialistic User Support group"],"affiliations":[{"raw_affiliation_string":"Cineca Specialistic User Support group","institution_ids":["https://openalex.org/I4210088701","https://openalex.org/I4210119786"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078958517","display_name":"Caterina Fusilli","orcid":"https://orcid.org/0000-0001-7497-0657"},"institutions":[{"id":"https://openalex.org/I4210118299","display_name":"Institute for Biomedicine","ror":"https://ror.org/02hsggv49","country_code":"IT","type":"facility","lineage":["https://openalex.org/I1319360392","https://openalex.org/I4210118299"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Caterina Fusilli","raw_affiliation_strings":["Statistics for Biomedicine"],"affiliations":[{"raw_affiliation_string":"Statistics for Biomedicine","institution_ids":["https://openalex.org/I4210118299"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021797056","display_name":"Daniele Capocefalo","orcid":"https://orcid.org/0000-0001-7849-837X"},"institutions":[{"id":"https://openalex.org/I861853513","display_name":"Sapienza University of Rome","ror":"https://ror.org/02be6w209","country_code":"IT","type":"education","lineage":["https://openalex.org/I861853513"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Daniele Capocefalo","raw_affiliation_strings":["Life Sciences, `La Sapienza' University of Rome"],"affiliations":[{"raw_affiliation_string":"Life Sciences, `La Sapienza' University of Rome","institution_ids":["https://openalex.org/I861853513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051511165","display_name":"Stefano Castellana","orcid":"https://orcid.org/0000-0001-8688-9530"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Stefano Castellana","raw_affiliation_strings":["Cellular and Molecular Biology"],"affiliations":[{"raw_affiliation_string":"Cellular and Molecular Biology","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084433498","display_name":"Angelo L. Vescovi","orcid":"https://orcid.org/0000-0002-1742-4112"},"institutions":[{"id":"https://openalex.org/I66752286","display_name":"University of Milano-Bicocca","ror":"https://ror.org/01ynf4891","country_code":"IT","type":"education","lineage":["https://openalex.org/I66752286"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Angelo Luigi Vescovi","raw_affiliation_strings":["Bicocca University of Milan"],"affiliations":[{"raw_affiliation_string":"Bicocca University of Milan","institution_ids":["https://openalex.org/I66752286"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5076382228","display_name":"Tommaso Mazza","orcid":"https://orcid.org/0000-0003-0434-8533"},"institutions":[{"id":"https://openalex.org/I2800188116","display_name":"Casa Sollievo della Sofferenza","ror":"https://ror.org/00md77g41","country_code":"IT","type":"healthcare","lineage":["https://openalex.org/I2800188116","https://openalex.org/I4210153126"]},{"id":"https://openalex.org/I4210153126","display_name":"Istituti di Ricovero e Cura a Carattere Scientifico","ror":"https://ror.org/04tfzc498","country_code":"IT","type":"healthcare","lineage":["https://openalex.org/I4210153126"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Tommaso Mazza","raw_affiliation_strings":["IRCCS Casa Sollievo della Sofferenza, Bioinformatics unit, viale Regina Margherita, Rome, Italy"],"affiliations":[{"raw_affiliation_string":"IRCCS Casa Sollievo della Sofferenza, Bioinformatics unit, viale Regina Margherita, Rome, Italy","institution_ids":["https://openalex.org/I2800188116","https://openalex.org/I4210153126"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5076382228"],"corresponding_institution_ids":["https://openalex.org/I2800188116","https://openalex.org/I4210153126"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":1.3473,"has_fulltext":true,"cited_by_count":32,"citation_normalized_percentile":{"value":0.79993654,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"19","issue":"5","first_page":"853","last_page":"862"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9948999881744385,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9948999881744385,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9812999963760376,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9754999876022339,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sorting","display_name":"Sorting","score":0.7120670080184937},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7001453042030334},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.586057186126709},{"id":"https://openalex.org/keywords/molecular-dynamics","display_name":"Molecular dynamics","score":0.5672510266304016},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5247816443443298},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.43012046813964844},{"id":"https://openalex.org/keywords/computational-science","display_name":"Computational science","score":0.3886334300041199},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2092551589012146},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.18912559747695923},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.14387431740760803},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.13709571957588196},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1273784637451172},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.11165809631347656}],"concepts":[{"id":"https://openalex.org/C111696304","wikidata":"https://www.wikidata.org/wiki/Q2303697","display_name":"Sorting","level":2,"score":0.7120670080184937},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7001453042030334},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.586057186126709},{"id":"https://openalex.org/C59593255","wikidata":"https://www.wikidata.org/wiki/Q901663","display_name":"Molecular dynamics","level":2,"score":0.5672510266304016},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5247816443443298},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.43012046813964844},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.3886334300041199},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2092551589012146},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.18912559747695923},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.14387431740760803},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.13709571957588196},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1273784637451172},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.11165809631347656},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bib/bbx006","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbx006","pdf_url":"https://academic.oup.com/bib/article-pdf/19/5/853/25861152/bbx006.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:28334084","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28334084","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:art.torvergata.it:2108/397496","is_oa":false,"landing_page_url":"https://hdl.handle.net/2108/397496","pdf_url":null,"source":{"id":"https://openalex.org/S4306400993","display_name":"Cineca Institutional Research Information System (Tor Vergata University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I116067653","host_organization_name":"University of Rome Tor Vergata","host_organization_lineage":["https://openalex.org/I116067653"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:boa.unimib.it:10281/191605","is_oa":false,"landing_page_url":"http://hdl.handle.net/10281/191605","pdf_url":null,"source":{"id":"https://openalex.org/S4306401259","display_name":"BOA (University of Milano-Bicocca)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I66752286","host_organization_name":"University of Milano-Bicocca","host_organization_lineage":["https://openalex.org/I66752286"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:iris.uniroma1.it:11573/1021275","is_oa":true,"landing_page_url":"http://hdl.handle.net/11573/1021275","pdf_url":null,"source":{"id":"https://openalex.org/S4377196107","display_name":"IRIS Research product catalog (Sapienza University of Rome)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bib/bbx006","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbx006","pdf_url":"https://academic.oup.com/bib/article-pdf/19/5/853/25861152/bbx006.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4471152221","display_name":null,"funder_award_id":"(AIRC","funder_id":"https://openalex.org/F4320323054","funder_display_name":"Associazione Italiana per la Ricerca sul Cancro"},{"id":"https://openalex.org/G6130072310","display_name":null,"funder_award_id":"5x1000","funder_id":"https://openalex.org/F4320323054","funder_display_name":"Associazione Italiana per la Ricerca sul Cancro"},{"id":"https://openalex.org/G693089545","display_name":null,"funder_award_id":"IG-14368","funder_id":"https://openalex.org/F4320323054","funder_display_name":"Associazione Italiana per la Ricerca sul Cancro"},{"id":"https://openalex.org/G8429495935","display_name":null,"funder_award_id":"Ricerca_Corrente","funder_id":"https://openalex.org/F4320321781","funder_display_name":"Ministero della Salute"},{"id":"https://openalex.org/G8620308813","display_name":null,"funder_award_id":"AIRC)","funder_id":"https://openalex.org/F4320323054","funder_display_name":"Associazione Italiana per la Ricerca sul Cancro"}],"funders":[{"id":"https://openalex.org/F4320321781","display_name":"Ministero della Salute","ror":"https://ror.org/00789fa95"},{"id":"https://openalex.org/F4320323054","display_name":"Associazione Italiana per la Ricerca sul Cancro","ror":"https://ror.org/02g2x7380"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2590535882.pdf","grobid_xml":"https://content.openalex.org/works/W2590535882.grobid-xml"},"referenced_works_count":40,"referenced_works":["https://openalex.org/W280973946","https://openalex.org/W1031578623","https://openalex.org/W1512617141","https://openalex.org/W1803102843","https://openalex.org/W1987134040","https://openalex.org/W1993392469","https://openalex.org/W1998271442","https://openalex.org/W2000250112","https://openalex.org/W2005315547","https://openalex.org/W2019523676","https://openalex.org/W2020130990","https://openalex.org/W2026885029","https://openalex.org/W2036794920","https://openalex.org/W2051309999","https://openalex.org/W2060809301","https://openalex.org/W2066757980","https://openalex.org/W2077544343","https://openalex.org/W2079199763","https://openalex.org/W2087588809","https://openalex.org/W2091660301","https://openalex.org/W2098055048","https://openalex.org/W2105924489","https://openalex.org/W2109801072","https://openalex.org/W2115213105","https://openalex.org/W2117020466","https://openalex.org/W2117473674","https://openalex.org/W2118233996","https://openalex.org/W2122732537","https://openalex.org/W2130479394","https://openalex.org/W2130681953","https://openalex.org/W2146481951","https://openalex.org/W2150981663","https://openalex.org/W2171017796","https://openalex.org/W2171559274","https://openalex.org/W2224056471","https://openalex.org/W2252661420","https://openalex.org/W2338979756","https://openalex.org/W2465641890","https://openalex.org/W2739999456","https://openalex.org/W4211196614"],"related_works":["https://openalex.org/W2739612537","https://openalex.org/W2349174696","https://openalex.org/W2360241746","https://openalex.org/W4313041667","https://openalex.org/W2767599893","https://openalex.org/W2381572297","https://openalex.org/W3114770763","https://openalex.org/W2088034942","https://openalex.org/W2149263892","https://openalex.org/W2785279175"],"abstract_inverted_index":{"Molecular":[0],"dynamics":[1],"(MD)":[2],"simulation":[3,91],"allows":[4],"one":[5,102],"to":[6,26,51,79,125],"predict":[7],"the":[8,31,84,93,96,114],"time":[9],"evolution":[10],"of":[11,14,37,95],"a":[12,42],"system":[13],"interacting":[15],"particles.":[16],"It":[17],"is":[18],"widely":[19],"used":[20,87],"in":[21,45,54],"physics,":[22],"chemistry":[23],"and":[24,34,77,90],"biology":[25],"address":[27],"specific":[28],"questions":[29],"about":[30],"structural":[32],"properties":[33],"dynamical":[35],"mechanisms":[36],"model":[38],"systems.":[39],"MD":[40,120],"earned":[41],"great":[43],"success":[44],"genome":[46],"research,":[47],"as":[48],"it":[49],"proved":[50],"be":[52],"beneficial":[53],"sorting":[55],"pathogenic":[56],"from":[57],"neutral":[58],"genomic":[59],"mutations.":[60],"Considering":[61],"their":[62],"computational":[63],"requirements,":[64],"simulations":[65],"are":[66,74],"commonly":[67],"performed":[68],"on":[69,128],"HPC":[70],"computing":[71],"devices,":[72],"which":[73],"generally":[75],"expensive":[76],"hard":[78],"administer.":[80],"However,":[81],"variables":[82],"like":[83],"software":[85],"tool":[86],"for":[88,119],"modeling":[89],"or":[92,105,111],"size":[94],"molecule":[97],"under":[98],"investigation":[99],"might":[100],"make":[101,113],"hardware":[103,116],"type":[104],"configuration":[106],"more":[107],"advantageous":[108],"than":[109],"another":[110],"even":[112],"commodity":[115],"definitely":[117],"suitable":[118],"studies.":[121],"This":[122],"work":[123],"aims":[124],"shed":[126],"lights":[127],"this":[129],"aspect.":[130]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":6}],"updated_date":"2026-04-18T07:56:08.524223","created_date":"2025-10-10T00:00:00"}
