{"id":"https://openalex.org/W2567587907","doi":"https://doi.org/10.1093/bib/bbw129","title":"Sixty-five years of the long march in protein secondary structure prediction: the final stretch?","display_name":"Sixty-five years of the long march in protein secondary structure prediction: the final stretch?","publication_year":2016,"publication_date":"2016-11-19","ids":{"openalex":"https://openalex.org/W2567587907","doi":"https://doi.org/10.1093/bib/bbw129","mag":"2567587907","pmid":"https://pubmed.ncbi.nlm.nih.gov/28040746"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbw129","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbw129","pdf_url":"https://academic.oup.com/bib/article-pdf/19/3/482/25603289/bbw129.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/19/3/482/25603289/bbw129.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5023539493","display_name":"Yuedong Yang","orcid":"https://orcid.org/0000-0002-6782-2813"},"institutions":[{"id":"https://openalex.org/I11701301","display_name":"Griffith University","ror":"https://ror.org/02sc3r913","country_code":"AU","type":"education","lineage":["https://openalex.org/I11701301"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Yuedong Yang","raw_affiliation_strings":["Insitute for Glycomics and School of Information and Communication Technology, Griffith University, Parklands Drive, Southport, QLD 4222, Australia","Insitute for Glycomics and School of Information and Communication Technology, Griffith University, Parklands Drive, Southport, QLD, Australia"],"affiliations":[{"raw_affiliation_string":"Insitute for Glycomics and School of Information and Communication Technology, Griffith University, Parklands Drive, Southport, QLD 4222, Australia","institution_ids":[]},{"raw_affiliation_string":"Insitute for Glycomics and School of Information and Communication Technology, Griffith University, Parklands Drive, Southport, QLD, Australia","institution_ids":["https://openalex.org/I11701301"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011520778","display_name":"Jianzhao Gao","orcid":"https://orcid.org/0000-0002-9943-4786"},"institutions":[{"id":"https://openalex.org/I205237279","display_name":"Nankai University","ror":"https://ror.org/01y1kjr75","country_code":"CN","type":"education","lineage":["https://openalex.org/I205237279"]},{"id":"https://openalex.org/I4401200345","display_name":"Laboratoire de physique de la mati\u00e8re condens\u00e9e","ror":"https://ror.org/05brss208","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I4401200345","https://openalex.org/I4647051"]}],"countries":["CN","FR"],"is_corresponding":false,"raw_author_name":"Jianzhao Gao","raw_affiliation_strings":["School of Mathematical Sciences and LPMC, Nankai University, Tianjin, China"],"affiliations":[{"raw_affiliation_string":"School of Mathematical Sciences and LPMC, Nankai University, Tianjin, China","institution_ids":["https://openalex.org/I205237279","https://openalex.org/I4401200345"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100610288","display_name":"Jihua Wang","orcid":"https://orcid.org/0000-0002-2109-8807"},"institutions":[{"id":"https://openalex.org/I4210112540","display_name":"Institute of Biophysics","ror":"https://ror.org/01tyv8576","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210112540"]},{"id":"https://openalex.org/I4210165547","display_name":"Dezhou University","ror":"https://ror.org/05mnjs436","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210165547"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jihua Wang","raw_affiliation_strings":["Shandong Provincial Key Laboratory of Biophysics, Institute of Biophysics, Dezhou University, Dezhou 253023, China","Shandong Provincial Key Laboratory of Biophysics, Institute of Biophysics, Dezhou University, Dezhou, China"],"affiliations":[{"raw_affiliation_string":"Shandong Provincial Key Laboratory of Biophysics, Institute of Biophysics, Dezhou University, Dezhou 253023, China","institution_ids":["https://openalex.org/I4210165547","https://openalex.org/I4210112540"]},{"raw_affiliation_string":"Shandong Provincial Key Laboratory of Biophysics, Institute of Biophysics, Dezhou University, Dezhou, China","institution_ids":["https://openalex.org/I4210165547","https://openalex.org/I4210112540"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009103991","display_name":"Rhys Heffernan","orcid":"https://orcid.org/0000-0002-9946-1995"},"institutions":[{"id":"https://openalex.org/I11701301","display_name":"Griffith University","ror":"https://ror.org/02sc3r913","country_code":"AU","type":"education","lineage":["https://openalex.org/I11701301"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Rhys Heffernan","raw_affiliation_strings":["Signal Processing Laboratory, Griffith University, Brisbane, 4122, Australia","Signal Processing Laboratory, Griffith University, Brisbane, Australia"],"affiliations":[{"raw_affiliation_string":"Signal Processing Laboratory, Griffith University, Brisbane, 4122, Australia","institution_ids":[]},{"raw_affiliation_string":"Signal Processing Laboratory, Griffith University, Brisbane, Australia","institution_ids":["https://openalex.org/I11701301"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066694098","display_name":"Jack Hanson","orcid":"https://orcid.org/0000-0001-6956-6748"},"institutions":[{"id":"https://openalex.org/I11701301","display_name":"Griffith University","ror":"https://ror.org/02sc3r913","country_code":"AU","type":"education","lineage":["https://openalex.org/I11701301"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Jack Hanson","raw_affiliation_strings":["Signal Processing Laboratory, Griffith University, Brisbane, 4122, Australia","Signal Processing Laboratory, Griffith University, Brisbane, Australia"],"affiliations":[{"raw_affiliation_string":"Signal Processing Laboratory, Griffith University, Brisbane, 4122, Australia","institution_ids":[]},{"raw_affiliation_string":"Signal Processing Laboratory, Griffith University, Brisbane, Australia","institution_ids":["https://openalex.org/I11701301"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046089538","display_name":"Kuldip K. Paliwal","orcid":"https://orcid.org/0000-0002-3553-3662"},"institutions":[{"id":"https://openalex.org/I11701301","display_name":"Griffith University","ror":"https://ror.org/02sc3r913","country_code":"AU","type":"education","lineage":["https://openalex.org/I11701301"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Kuldip Paliwal","raw_affiliation_strings":["Signal Processing Laboratory, Griffith University, Brisbane, 4122, Australia","Signal Processing Laboratory, Griffith University, Brisbane, Australia"],"affiliations":[{"raw_affiliation_string":"Signal Processing Laboratory, Griffith University, Brisbane, 4122, Australia","institution_ids":[]},{"raw_affiliation_string":"Signal Processing Laboratory, Griffith University, Brisbane, Australia","institution_ids":["https://openalex.org/I11701301"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5032724151","display_name":"Yaoqi Zhou","orcid":"https://orcid.org/0000-0002-9958-5699"},"institutions":[{"id":"https://openalex.org/I11701301","display_name":"Griffith University","ror":"https://ror.org/02sc3r913","country_code":"AU","type":"education","lineage":["https://openalex.org/I11701301"]},{"id":"https://openalex.org/I4210112540","display_name":"Institute of Biophysics","ror":"https://ror.org/01tyv8576","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210112540"]},{"id":"https://openalex.org/I4210165547","display_name":"Dezhou University","ror":"https://ror.org/05mnjs436","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210165547"]}],"countries":["AU","CN"],"is_corresponding":true,"raw_author_name":"Yaoqi Zhou","raw_affiliation_strings":["Insitute for Glycomics and School of Information and Communication Technology, Griffith University, Parklands Drive, Southport, QLD 4222, Australia","Shandong Provincial Key Laboratory of Biophysics, Institute of Biophysics, Dezhou University, Dezhou 253023, China","Shandong Provincial Key Laboratory of Biophysics, Institute of Biophysics, Dezhou University, Dezhou, China","Insitute for Glycomics and School of Information and Communication Technology, Griffith University, Parklands Drive, Southport, QLD, Australia"],"affiliations":[{"raw_affiliation_string":"Insitute for Glycomics and School of Information and Communication Technology, Griffith University, Parklands Drive, Southport, QLD 4222, Australia","institution_ids":[]},{"raw_affiliation_string":"Shandong Provincial Key Laboratory of Biophysics, Institute of Biophysics, Dezhou University, Dezhou 253023, China","institution_ids":["https://openalex.org/I4210165547","https://openalex.org/I4210112540"]},{"raw_affiliation_string":"Shandong Provincial Key Laboratory of Biophysics, Institute of Biophysics, Dezhou University, Dezhou, China","institution_ids":["https://openalex.org/I4210165547","https://openalex.org/I4210112540"]},{"raw_affiliation_string":"Insitute for Glycomics and School of Information and Communication Technology, Griffith University, Parklands Drive, Southport, QLD, Australia","institution_ids":["https://openalex.org/I11701301"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5032724151"],"corresponding_institution_ids":["https://openalex.org/I11701301","https://openalex.org/I4210112540","https://openalex.org/I4210165547"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":12.3768,"has_fulltext":true,"cited_by_count":258,"citation_normalized_percentile":{"value":0.98989414,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"19","issue":"3","first_page":"bbw129","last_page":"bbw129"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/protein-secondary-structure","display_name":"Protein secondary structure","score":0.7822974324226379},{"id":"https://openalex.org/keywords/protein-structure-prediction","display_name":"Protein structure prediction","score":0.7071624398231506},{"id":"https://openalex.org/keywords/template","display_name":"Template","score":0.6232584118843079},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.4672403633594513},{"id":"https://openalex.org/keywords/torsion","display_name":"Torsion (gastropod)","score":0.4184659719467163},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.41428226232528687},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3363027572631836},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.2348114550113678},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1903899610042572}],"concepts":[{"id":"https://openalex.org/C62614982","wikidata":"https://www.wikidata.org/wiki/Q904984","display_name":"Protein secondary structure","level":2,"score":0.7822974324226379},{"id":"https://openalex.org/C18051474","wikidata":"https://www.wikidata.org/wiki/Q899656","display_name":"Protein structure prediction","level":3,"score":0.7071624398231506},{"id":"https://openalex.org/C82714645","wikidata":"https://www.wikidata.org/wiki/Q438331","display_name":"Template","level":2,"score":0.6232584118843079},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.4672403633594513},{"id":"https://openalex.org/C77461463","wikidata":"https://www.wikidata.org/wiki/Q7827201","display_name":"Torsion (gastropod)","level":2,"score":0.4184659719467163},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.41428226232528687},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3363027572631836},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.2348114550113678},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1903899610042572},{"id":"https://openalex.org/C90856448","wikidata":"https://www.wikidata.org/wiki/Q431","display_name":"Zoology","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/bib/bbw129","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbw129","pdf_url":"https://academic.oup.com/bib/article-pdf/19/3/482/25603289/bbw129.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:28040746","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28040746","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:research-repository.griffith.edu.au:10072/379907","is_oa":true,"landing_page_url":"http://hdl.handle.net/10072/379907","pdf_url":"http://hdl.handle.net/10072/379907","source":{"id":"https://openalex.org/S4306402548","display_name":"Griffith Research Online (Griffith University, Queensland, Australia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I11701301","host_organization_name":"Griffith University","host_organization_lineage":["https://openalex.org/I11701301"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal article"},{"id":"pmh:oai:espace.library.uq.edu.au:UQ:f44a2d1","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306402388","display_name":"Queensland's institutional digital repository (The University of Queensland)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I165143802","host_organization_name":"The University of Queensland","host_organization_lineage":["https://openalex.org/I165143802"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:europepmc.org:4876117","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC5952956","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:5952956","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5952956","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbw129","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbw129","pdf_url":"https://academic.oup.com/bib/article-pdf/19/3/482/25603289/bbw129.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1119380218","display_name":null,"funder_award_id":"61671107","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1121271761","display_name":null,"funder_award_id":"Program","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1158483028","display_name":null,"funder_award_id":"6167110","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1231421488","display_name":null,"funder_award_id":"under","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1658842158","display_name":null,"funder_award_id":"1083450","funder_id":"https://openalex.org/F4320334705","funder_display_name":"National Health and Medical Research Council"},{"id":"https://openalex.org/G1866924010","display_name":null,"funder_award_id":"1083450","funder_id":"https://openalex.org/F4320334704","funder_display_name":"Australian Research Council"},{"id":"https://openalex.org/G24245176","display_name":null,"funder_award_id":"61540025","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2815195420","display_name":null,"funder_award_id":"LE150100161","funder_id":"https://openalex.org/F4320334704","funder_display_name":"Australian Research Council"},{"id":"https://openalex.org/G2851127535","display_name":null,"funder_award_id":"105977","funder_id":"https://openalex.org/F4320334705","funder_display_name":"National Health and Medical Research Council"},{"id":"https://openalex.org/G3317480652","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5155094931","display_name":null,"funder_award_id":"61271378","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5155579981","display_name":null,"funder_award_id":"1059775","funder_id":"https://openalex.org/F4320334704","funder_display_name":"Australian Research Council"},{"id":"https://openalex.org/G5849025586","display_name":null,"funder_award_id":"1059775 and 1083450","funder_id":"https://openalex.org/F4320334705","funder_display_name":"National Health and Medical Research Council"},{"id":"https://openalex.org/G5994120800","display_name":null,"funder_award_id":"Natural","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G611870384","display_name":null,"funder_award_id":"grant","funder_id":"https://openalex.org/F4320334704","funder_display_name":"Australian Research Council"},{"id":"https://openalex.org/G7197077966","display_name":null,"funder_award_id":"LE150100161","funder_id":"https://openalex.org/F4320334705","funder_display_name":"National Health and Medical Research Council"},{"id":"https://openalex.org/G8351842556","display_name":null,"funder_award_id":"1059775","funder_id":"https://openalex.org/F4320334705","funder_display_name":"National Health and Medical Research Council"},{"id":"https://openalex.org/G8666441863","display_name":null,"funder_award_id":"20130031120001","funder_id":"https://openalex.org/F4320336024","funder_display_name":"Specialized Research Fund for the Doctoral Program of Higher Education of China"}],"funders":[{"id":"https://openalex.org/F4320315813","display_name":"Queensland Cyber Infrastructure Foundation","ror":"https://ror.org/03sd43014"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"},{"id":"https://openalex.org/F4320334704","display_name":"Australian Research Council","ror":"https://ror.org/05mmh0f86"},{"id":"https://openalex.org/F4320334705","display_name":"National Health and Medical Research Council","ror":"https://ror.org/011kf5r70"},{"id":"https://openalex.org/F4320336024","display_name":"Specialized Research Fund for the Doctoral Program of Higher Education of China","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2567587907.pdf","grobid_xml":"https://content.openalex.org/works/W2567587907.grobid-xml"},"referenced_works_count":169,"referenced_works":["https://openalex.org/W198082522","https://openalex.org/W865106923","https://openalex.org/W1548178570","https://openalex.org/W1570643690","https://openalex.org/W1588979652","https://openalex.org/W1596947964","https://openalex.org/W1600959429","https://openalex.org/W1605300833","https://openalex.org/W1606410455","https://openalex.org/W1758266623","https://openalex.org/W1826484537","https://openalex.org/W1838357706","https://openalex.org/W1895577753","https://openalex.org/W1907717769","https://openalex.org/W1964655247","https://openalex.org/W1965116806","https://openalex.org/W1968249643","https://openalex.org/W1976005460","https://openalex.org/W1978520289","https://openalex.org/W1978607153","https://openalex.org/W1981132436","https://openalex.org/W1983633134","https://openalex.org/W1985854865","https://openalex.org/W1986830449","https://openalex.org/W1987328021","https://openalex.org/W1988130778","https://openalex.org/W1988551786","https://openalex.org/W1991126572","https://openalex.org/W1995285602","https://openalex.org/W1996073320","https://openalex.org/W1998490996","https://openalex.org/W2003274125","https://openalex.org/W2008708467","https://openalex.org/W2013507130","https://openalex.org/W2022015698","https://openalex.org/W2025670719","https://openalex.org/W2025938842","https://openalex.org/W2028181978","https://openalex.org/W2029476353","https://openalex.org/W2031627786","https://openalex.org/W2032008622","https://openalex.org/W2032188785","https://openalex.org/W2035861810","https://openalex.org/W2041046137","https://openalex.org/W2041369927","https://openalex.org/W2044999719","https://openalex.org/W2047819993","https://openalex.org/W2049695588","https://openalex.org/W2050945397","https://openalex.org/W2051545676","https://openalex.org/W2051872583","https://openalex.org/W2057126467","https://openalex.org/W2057157558","https://openalex.org/W2057289558","https://openalex.org/W2059136964","https://openalex.org/W2060178110","https://openalex.org/W2061042699","https://openalex.org/W2061098698","https://openalex.org/W2061500593","https://openalex.org/W2061663059","https://openalex.org/W2062166748","https://openalex.org/W2064281058","https://openalex.org/W2064675550","https://openalex.org/W2066507577","https://openalex.org/W2068379347","https://openalex.org/W2068558866","https://openalex.org/W2068976016","https://openalex.org/W2074808135","https://openalex.org/W2079735306","https://openalex.org/W2079871896","https://openalex.org/W2080201001","https://openalex.org/W2084281591","https://openalex.org/W2085277871","https://openalex.org/W2086403919","https://openalex.org/W2087495141","https://openalex.org/W2088083202","https://openalex.org/W2088475128","https://openalex.org/W2089597488","https://openalex.org/W2091518964","https://openalex.org/W2092886425","https://openalex.org/W2092920038","https://openalex.org/W2094852543","https://openalex.org/W2095070960","https://openalex.org/W2095450147","https://openalex.org/W2095791446","https://openalex.org/W2096777589","https://openalex.org/W2099886875","https://openalex.org/W2102470476","https://openalex.org/W2103017472","https://openalex.org/W2105492294","https://openalex.org/W2106693479","https://openalex.org/W2107931081","https://openalex.org/W2108642468","https://openalex.org/W2111705855","https://openalex.org/W2113177393","https://openalex.org/W2113671566","https://openalex.org/W2114899912","https://openalex.org/W2117901689","https://openalex.org/W2121702291","https://openalex.org/W2122088524","https://openalex.org/W2122945697","https://openalex.org/W2124371326","https://openalex.org/W2124537004","https://openalex.org/W2126486632","https://openalex.org/W2128653811","https://openalex.org/W2128801478","https://openalex.org/W2129312340","https://openalex.org/W2130325614","https://openalex.org/W2130357646","https://openalex.org/W2130479394","https://openalex.org/W2131395827","https://openalex.org/W2131474431","https://openalex.org/W2131774270","https://openalex.org/W2135079066","https://openalex.org/W2136299394","https://openalex.org/W2136364519","https://openalex.org/W2137329336","https://openalex.org/W2139582206","https://openalex.org/W2140678125","https://openalex.org/W2140992384","https://openalex.org/W2141128950","https://openalex.org/W2141803423","https://openalex.org/W2141915739","https://openalex.org/W2144612748","https://openalex.org/W2145087978","https://openalex.org/W2146296021","https://openalex.org/W2147645629","https://openalex.org/W2147880316","https://openalex.org/W2149751094","https://openalex.org/W2153187042","https://openalex.org/W2154595610","https://openalex.org/W2156125289","https://openalex.org/W2156798505","https://openalex.org/W2157437977","https://openalex.org/W2158714788","https://openalex.org/W2159426997","https://openalex.org/W2159940018","https://openalex.org/W2161596896","https://openalex.org/W2161958780","https://openalex.org/W2162061564","https://openalex.org/W2162685411","https://openalex.org/W2164163822","https://openalex.org/W2165667682","https://openalex.org/W2168220711","https://openalex.org/W2168337765","https://openalex.org/W2168576911","https://openalex.org/W2169223021","https://openalex.org/W2169243280","https://openalex.org/W2171641243","https://openalex.org/W2171812205","https://openalex.org/W2176135968","https://openalex.org/W2178970862","https://openalex.org/W2286307847","https://openalex.org/W2288234278","https://openalex.org/W2319548621","https://openalex.org/W2343540465","https://openalex.org/W2425595198","https://openalex.org/W2427990386","https://openalex.org/W2465317107","https://openalex.org/W2507606055","https://openalex.org/W2520998691","https://openalex.org/W2547388037","https://openalex.org/W2566370974","https://openalex.org/W2963457143","https://openalex.org/W4205995961","https://openalex.org/W4235121031","https://openalex.org/W4246084816","https://openalex.org/W4256395558","https://openalex.org/W6675822510"],"related_works":["https://openalex.org/W3023334178","https://openalex.org/W2036923798","https://openalex.org/W2928838901","https://openalex.org/W2113993025","https://openalex.org/W2494604670","https://openalex.org/W1578077690","https://openalex.org/W4206825711","https://openalex.org/W2117910541","https://openalex.org/W2114568928","https://openalex.org/W3086268169"],"abstract_inverted_index":{"Protein":[0],"secondary":[1,79,102,183,202],"structure":[2,25,47,80,103,184,203],"prediction":[3,98,104,128],"began":[4],"in":[5,143],"1951":[6],"when":[7],"Pauling":[8],"and":[9,13,71,82,110,113],"Corey":[10],"predicted":[11],"helical":[12],"sheet":[14],"conformations":[15,158],"for":[16,73,121,182],"protein":[17,24,69,201],"polypeptide":[18],"backbone":[19,107],"even":[20],"before":[21],"the":[22,75,93,156,177,193,197],"first":[23],"was":[26],"determined.":[27],"Sixty-five":[28],"years":[29,59],"later,":[30],"powerful":[31,84,162],"new":[32,35],"methods":[33,165],"breathe":[34],"life":[36],"into":[37],"this":[38],"field.":[39],"The":[40,186],"highest":[41],"three-state":[42,97],"accuracy":[43],"without":[44],"relying":[45],"on":[46],"templates":[48],"is":[49],"now":[50],"at":[51],"82-84%,":[52],"a":[53,57,144],"number":[54],"unthinkable":[55],"just":[56],"few":[58],"ago.":[60],"These":[61],"improvements":[62],"came":[63],"from":[64,155],"increasingly":[65],"larger":[66],"databases":[67],"of":[68,77,96,106,129,139,146,169,180,196],"sequences":[70],"structures":[72,132],"training,":[74],"use":[76],"template":[78],"information":[81],"more":[83,119],"deep":[85,163],"learning":[86,164],"techniques.":[87],"As":[88],"we":[89],"are":[90],"approaching":[91],"to":[92,101,174,190],"theoretical":[94],"limit":[95],"(88-90%),":[99],"alternative":[100],"(prediction":[105],"torsion":[108,114],"angles":[109,112],"C\u03b1-atom-based":[111],"angles)":[115],"not":[116],"only":[117],"has":[118,188],"room":[120],"further":[122],"improvement":[123],"but":[124],"also":[125],"allows":[126],"direct":[127],"three-dimensional":[130],"fragment":[131],"with":[133,166],"constantly":[134],"improved":[135,167],"accuracy.":[136],"About":[137],"20%":[138],"all":[140],"40-residue":[141],"fragments":[142],"database":[145],"1199":[147],"non-redundant":[148],"proteins":[149],"have":[150],"<6":[151],"\u00c5":[152],"root-mean-squared":[153],"distance":[154],"native":[157],"by":[159],"SPIDER2.":[160],"More":[161],"capability":[168],"capturing":[170],"long-range":[171],"interactions":[172],"begin":[173],"emerge":[175],"as":[176],"next":[178],"generation":[179],"techniques":[181],"prediction.":[185,204],"time":[187],"come":[189],"finish":[191],"off":[192],"final":[194],"stretch":[195],"long":[198],"march":[199],"towards":[200]},"counts_by_year":[{"year":2025,"cited_by_count":15},{"year":2024,"cited_by_count":26},{"year":2023,"cited_by_count":26},{"year":2022,"cited_by_count":40},{"year":2021,"cited_by_count":37},{"year":2020,"cited_by_count":43},{"year":2019,"cited_by_count":43},{"year":2018,"cited_by_count":22},{"year":2017,"cited_by_count":6}],"updated_date":"2026-04-16T08:26:57.006410","created_date":"2025-10-10T00:00:00"}
