{"id":"https://openalex.org/W2531624341","doi":"https://doi.org/10.1093/bib/bbw101","title":"A bioimage informatics platform for high-throughput embryo phenotyping","display_name":"A bioimage informatics platform for high-throughput embryo phenotyping","publication_year":2016,"publication_date":"2016-10-14","ids":{"openalex":"https://openalex.org/W2531624341","doi":"https://doi.org/10.1093/bib/bbw101","mag":"2531624341","pmid":"https://pubmed.ncbi.nlm.nih.gov/27742664"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbw101","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbw101","pdf_url":"https://academic.oup.com/bib/article-pdf/19/1/41/25406950/bbw101.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bib/article-pdf/19/1/41/25406950/bbw101.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5013498181","display_name":"James M. Brown","orcid":"https://orcid.org/0000-0001-7636-4554"},"institutions":[{"id":"https://openalex.org/I4210086857","display_name":"Mary Lyon Centre at MRC Harwell","ror":"https://ror.org/0001h1y25","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210086857","https://openalex.org/I4210087105","https://openalex.org/I90344618"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"James M. Brown","raw_affiliation_strings":["MRC Harwell Institute, Harwell Campus, Oxfordshire"],"affiliations":[{"raw_affiliation_string":"MRC Harwell Institute, Harwell Campus, Oxfordshire","institution_ids":["https://openalex.org/I4210086857"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083793338","display_name":"Neil Horner","orcid":"https://orcid.org/0000-0002-0550-4537"},"institutions":[{"id":"https://openalex.org/I4210086857","display_name":"Mary Lyon Centre at MRC Harwell","ror":"https://ror.org/0001h1y25","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210086857","https://openalex.org/I4210087105","https://openalex.org/I90344618"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Neil R. Horner","raw_affiliation_strings":["MRC Harwell Institute, Harwell Campus, Oxfordshire"],"affiliations":[{"raw_affiliation_string":"MRC Harwell Institute, Harwell Campus, Oxfordshire","institution_ids":["https://openalex.org/I4210086857"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047088143","display_name":"Thomas N. Lawson","orcid":"https://orcid.org/0000-0002-5915-7980"},"institutions":[{"id":"https://openalex.org/I4210086857","display_name":"Mary Lyon Centre at MRC Harwell","ror":"https://ror.org/0001h1y25","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210086857","https://openalex.org/I4210087105","https://openalex.org/I90344618"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Thomas N. Lawson","raw_affiliation_strings":["MRC Harwell Institute, Harwell Campus, Oxfordshire"],"affiliations":[{"raw_affiliation_string":"MRC Harwell Institute, Harwell Campus, Oxfordshire","institution_ids":["https://openalex.org/I4210086857"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056774331","display_name":"Tanja Fiegel","orcid":null},"institutions":[{"id":"https://openalex.org/I4210086857","display_name":"Mary Lyon Centre at MRC Harwell","ror":"https://ror.org/0001h1y25","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210086857","https://openalex.org/I4210087105","https://openalex.org/I90344618"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Tanja Fiegel","raw_affiliation_strings":["MRC Harwell Institute, Harwell Campus, Oxfordshire"],"affiliations":[{"raw_affiliation_string":"MRC Harwell Institute, Harwell Campus, Oxfordshire","institution_ids":["https://openalex.org/I4210086857"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108146353","display_name":"Simon Greenaway","orcid":null},"institutions":[{"id":"https://openalex.org/I4210086857","display_name":"Mary Lyon Centre at MRC Harwell","ror":"https://ror.org/0001h1y25","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210086857","https://openalex.org/I4210087105","https://openalex.org/I90344618"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Simon Greenaway","raw_affiliation_strings":["MRC Harwell Institute, Harwell Campus, Oxfordshire"],"affiliations":[{"raw_affiliation_string":"MRC Harwell Institute, Harwell Campus, Oxfordshire","institution_ids":["https://openalex.org/I4210086857"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103569446","display_name":"Hugh W. Morgan","orcid":null},"institutions":[{"id":"https://openalex.org/I4210086857","display_name":"Mary Lyon Centre at MRC Harwell","ror":"https://ror.org/0001h1y25","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210086857","https://openalex.org/I4210087105","https://openalex.org/I90344618"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Hugh Morgan","raw_affiliation_strings":["MRC Harwell Institute, Harwell Campus, Oxfordshire"],"affiliations":[{"raw_affiliation_string":"MRC Harwell Institute, Harwell Campus, Oxfordshire","institution_ids":["https://openalex.org/I4210086857"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032951027","display_name":"Natalie Ring","orcid":"https://orcid.org/0000-0002-8971-8507"},"institutions":[{"id":"https://openalex.org/I4210086857","display_name":"Mary Lyon Centre at MRC Harwell","ror":"https://ror.org/0001h1y25","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210086857","https://openalex.org/I4210087105","https://openalex.org/I90344618"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Natalie Ring","raw_affiliation_strings":["MRC Harwell Institute, Harwell Campus, Oxfordshire"],"affiliations":[{"raw_affiliation_string":"MRC Harwell Institute, Harwell Campus, Oxfordshire","institution_ids":["https://openalex.org/I4210086857"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063683507","display_name":"Lu\u00eds Santos","orcid":"https://orcid.org/0000-0001-6403-4902"},"institutions":[{"id":"https://openalex.org/I4210086857","display_name":"Mary Lyon Centre at MRC Harwell","ror":"https://ror.org/0001h1y25","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210086857","https://openalex.org/I4210087105","https://openalex.org/I90344618"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Luis Santos","raw_affiliation_strings":["MRC Harwell Institute, Harwell Campus, Oxfordshire"],"affiliations":[{"raw_affiliation_string":"MRC Harwell Institute, Harwell Campus, Oxfordshire","institution_ids":["https://openalex.org/I4210086857"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111860680","display_name":"Duncan Sneddon","orcid":null},"institutions":[{"id":"https://openalex.org/I4210086857","display_name":"Mary Lyon Centre at MRC Harwell","ror":"https://ror.org/0001h1y25","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210086857","https://openalex.org/I4210087105","https://openalex.org/I90344618"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Duncan Sneddon","raw_affiliation_strings":["MRC Harwell Institute, Harwell Campus, Oxfordshire"],"affiliations":[{"raw_affiliation_string":"MRC Harwell Institute, Harwell Campus, Oxfordshire","institution_ids":["https://openalex.org/I4210086857"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034944031","display_name":"Lydia Teboul","orcid":"https://orcid.org/0000-0002-2789-8637"},"institutions":[{"id":"https://openalex.org/I4210086857","display_name":"Mary Lyon Centre at MRC Harwell","ror":"https://ror.org/0001h1y25","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210086857","https://openalex.org/I4210087105","https://openalex.org/I90344618"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Lydia Teboul","raw_affiliation_strings":["MRC Harwell Institute, Harwell Campus, Oxfordshire"],"affiliations":[{"raw_affiliation_string":"MRC Harwell Institute, Harwell Campus, Oxfordshire","institution_ids":["https://openalex.org/I4210086857"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015571439","display_name":"Jennifer Vibert","orcid":"https://orcid.org/0000-0003-3841-2222"},"institutions":[{"id":"https://openalex.org/I4210086857","display_name":"Mary Lyon Centre at MRC Harwell","ror":"https://ror.org/0001h1y25","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210086857","https://openalex.org/I4210087105","https://openalex.org/I90344618"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jennifer Vibert","raw_affiliation_strings":["MRC Harwell Institute, Harwell Campus, Oxfordshire"],"affiliations":[{"raw_affiliation_string":"MRC Harwell Institute, Harwell Campus, Oxfordshire","institution_ids":["https://openalex.org/I4210086857"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052229604","display_name":"Gagarine Yaikhom","orcid":"https://orcid.org/0000-0003-4571-3357"},"institutions":[{"id":"https://openalex.org/I4210086857","display_name":"Mary Lyon Centre at MRC Harwell","ror":"https://ror.org/0001h1y25","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210086857","https://openalex.org/I4210087105","https://openalex.org/I90344618"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Gagarine Yaikhom","raw_affiliation_strings":["MRC Harwell Institute, Harwell Campus, Oxfordshire"],"affiliations":[{"raw_affiliation_string":"MRC Harwell Institute, Harwell Campus, Oxfordshire","institution_ids":["https://openalex.org/I4210086857"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026713879","display_name":"Henrik Westerberg","orcid":"https://orcid.org/0000-0002-7204-6900"},"institutions":[{"id":"https://openalex.org/I4210086857","display_name":"Mary Lyon Centre at MRC Harwell","ror":"https://ror.org/0001h1y25","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210086857","https://openalex.org/I4210087105","https://openalex.org/I90344618"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Henrik Westerberg","raw_affiliation_strings":["MRC Harwell Institute, Harwell Campus, Oxfordshire"],"affiliations":[{"raw_affiliation_string":"MRC Harwell Institute, Harwell Campus, Oxfordshire","institution_ids":["https://openalex.org/I4210086857"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5084604490","display_name":"Ann\u2010Marie Mallon","orcid":"https://orcid.org/0000-0003-4047-4019"},"institutions":[{"id":"https://openalex.org/I4210086857","display_name":"Mary Lyon Centre at MRC Harwell","ror":"https://ror.org/0001h1y25","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210086857","https://openalex.org/I4210087105","https://openalex.org/I90344618"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Ann-Marie Mallon","raw_affiliation_strings":["MRC Harwell Institute, Harwell Campus, Oxfordshire"],"affiliations":[{"raw_affiliation_string":"MRC Harwell Institute, Harwell Campus, Oxfordshire","institution_ids":["https://openalex.org/I4210086857"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":14,"corresponding_author_ids":["https://openalex.org/A5013498181"],"corresponding_institution_ids":["https://openalex.org/I4210086857"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":2.5175,"has_fulltext":false,"cited_by_count":18,"citation_normalized_percentile":{"value":0.91441882,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"19","issue":"1","first_page":"bbw101","last_page":"bbw101"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9927999973297119,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.738268256187439},{"id":"https://openalex.org/keywords/upload","display_name":"Upload","score":0.6626738905906677},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6124919056892395},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5940642356872559},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5260764956474304},{"id":"https://openalex.org/keywords/health-informatics-tools","display_name":"Health informatics tools","score":0.4933237135410309},{"id":"https://openalex.org/keywords/modalities","display_name":"Modalities","score":0.4151051640510559},{"id":"https://openalex.org/keywords/informatics","display_name":"Informatics","score":0.3854871690273285},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.30456215143203735}],"concepts":[{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.738268256187439},{"id":"https://openalex.org/C71901391","wikidata":"https://www.wikidata.org/wiki/Q7126699","display_name":"Upload","level":2,"score":0.6626738905906677},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6124919056892395},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5940642356872559},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5260764956474304},{"id":"https://openalex.org/C167785021","wikidata":"https://www.wikidata.org/wiki/Q5691083","display_name":"Health informatics tools","level":3,"score":0.4933237135410309},{"id":"https://openalex.org/C2779903281","wikidata":"https://www.wikidata.org/wiki/Q6888026","display_name":"Modalities","level":2,"score":0.4151051640510559},{"id":"https://openalex.org/C191630685","wikidata":"https://www.wikidata.org/wiki/Q4027615","display_name":"Informatics","level":2,"score":0.3854871690273285},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.30456215143203735},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C36289849","wikidata":"https://www.wikidata.org/wiki/Q34749","display_name":"Social science","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001331","descriptor_name":"Automation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001331","descriptor_name":"Automation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001331","descriptor_name":"Automation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001331","descriptor_name":"Automation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004622","descriptor_name":"Embryo, Mammalian","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":false},{"descriptor_ui":"D004622","descriptor_name":"Embryo, Mammalian","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":false},{"descriptor_ui":"D004622","descriptor_name":"Embryo, Mammalian","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":false},{"descriptor_ui":"D004622","descriptor_name":"Embryo, Mammalian","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":false},{"descriptor_ui":"D004622","descriptor_name":"Embryo, Mammalian","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D004622","descriptor_name":"Embryo, Mammalian","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D004622","descriptor_name":"Embryo, Mammalian","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D004622","descriptor_name":"Embryo, Mammalian","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008810","descriptor_name":"Mice, Inbred C57BL","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008810","descriptor_name":"Mice, Inbred C57BL","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008810","descriptor_name":"Mice, Inbred C57BL","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008810","descriptor_name":"Mice, Inbred C57BL","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008817","descriptor_name":"Mice, Mutant Strains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008817","descriptor_name":"Mice, Mutant Strains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008817","descriptor_name":"Mice, Mutant Strains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008817","descriptor_name":"Mice, Mutant Strains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057054","descriptor_name":"Molecular Imaging","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D057054","descriptor_name":"Molecular Imaging","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D057054","descriptor_name":"Molecular Imaging","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D057054","descriptor_name":"Molecular Imaging","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D057054","descriptor_name":"Molecular Imaging","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057054","descriptor_name":"Molecular Imaging","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057054","descriptor_name":"Molecular Imaging","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057054","descriptor_name":"Molecular Imaging","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057166","descriptor_name":"High-Throughput Screening Assays","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057166","descriptor_name":"High-Throughput Screening Assays","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057166","descriptor_name":"High-Throughput Screening Assays","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057166","descriptor_name":"High-Throughput Screening Assays","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/bib/bbw101","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbw101","pdf_url":"https://academic.oup.com/bib/article-pdf/19/1/41/25406950/bbw101.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:27742664","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27742664","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pure.ed.ac.uk:openaire/ed951644-895c-491e-a721-87f7a783f18b","is_oa":true,"landing_page_url":"https://www.research.ed.ac.uk/en/publications/ed951644-895c-491e-a721-87f7a783f18b","pdf_url":null,"source":{"id":"https://openalex.org/S4306400321","display_name":"Edinburgh Research Explorer (University of Edinburgh)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I98677209","host_organization_name":"University of Edinburgh","host_organization_lineage":["https://openalex.org/I98677209"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Brown, J M, Horner, N R, Lawson, T N, Fiegel, T, Greenaway, S, Morgan, H, Ring, N, Santos, L, Sneddon, D, Teboul, L, Vibert, J, Yaikhom, G, Westerberg, H & Mallon, A-M 2018, 'A bioimage informatics platform for high-throughput embryo phenotyping', Briefings in bioinformatics, vol. 19, no. 1, pp. 41-51. https://doi.org/10.1093/bib/bbw101","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:eprints.lincoln.ac.uk:35643","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4377196275","display_name":"Lincoln Repository (University of Lincoln)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I51532219","host_organization_name":"University of Lincoln","host_organization_lineage":["https://openalex.org/I51532219"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:europepmc.org:4990680","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5862285","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:figshare.com:article/24376177","is_oa":true,"landing_page_url":"https://figshare.com/articles/journal_contribution/A_bioimage_informatics_platform_for_high-throughput_embryo_phenotyping/24376177","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbw101","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbw101","pdf_url":"https://academic.oup.com/bib/article-pdf/19/1/41/25406950/bbw101.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.47999998927116394,"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals"},{"score":0.41999998688697815,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320313288","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2531624341.pdf","grobid_xml":"https://content.openalex.org/works/W2531624341.grobid-xml"},"referenced_works_count":29,"referenced_works":["https://openalex.org/W1550287776","https://openalex.org/W1866082553","https://openalex.org/W1943803206","https://openalex.org/W1965647283","https://openalex.org/W1974565082","https://openalex.org/W1974694769","https://openalex.org/W1974717034","https://openalex.org/W1985870845","https://openalex.org/W1988418842","https://openalex.org/W2069558079","https://openalex.org/W2095687577","https://openalex.org/W2097996483","https://openalex.org/W2102672293","https://openalex.org/W2110663696","https://openalex.org/W2127890285","https://openalex.org/W2131579659","https://openalex.org/W2132893328","https://openalex.org/W2136773811","https://openalex.org/W2140099710","https://openalex.org/W2149359194","https://openalex.org/W2154331071","https://openalex.org/W2154917588","https://openalex.org/W2160971829","https://openalex.org/W2161247859","https://openalex.org/W2166934660","https://openalex.org/W2214711630","https://openalex.org/W2248155369","https://openalex.org/W2518901523","https://openalex.org/W4251431888"],"related_works":["https://openalex.org/W2017123803","https://openalex.org/W2974071312","https://openalex.org/W2320705913","https://openalex.org/W2955949264","https://openalex.org/W2005011662","https://openalex.org/W3174814859","https://openalex.org/W4311292698","https://openalex.org/W4309236105","https://openalex.org/W2979004191","https://openalex.org/W1835259194"],"abstract_inverted_index":{"High-throughput":[0],"phenotyping":[1],"is":[2,114,194],"a":[3,80,146],"cornerstone":[4],"of":[5,25,41,66,82,119,148,158,180,219,245],"numerous":[6],"functional":[7],"genomics":[8],"projects.":[9],"In":[10,141],"recent":[11],"years,":[12],"imaging":[13,33],"screens":[14],"have":[15,174],"become":[16],"increasingly":[17],"important":[18],"in":[19,23,38],"understanding":[20],"gene-phenotype":[21],"relationships":[22],"studies":[24],"cells,":[26],"tissues":[27],"and":[28,52,86,94,121,156,171,204,213,217],"whole":[29,49],"organisms.":[30],"Three-dimensional":[31],"(3D)":[32],"has":[34],"risen":[35],"to":[36,47,99,177,202,210,225],"prominence":[37],"the":[39,58,76,110,127,132,153,162,190,215],"field":[40],"developmental":[42],"biology":[43],"for":[44,101,129,134,161,189,200],"its":[45],"ability":[46],"capture":[48],"embryo":[50],"morphology":[51],"gene":[53],"expression,":[54],"as":[55],"exemplified":[56],"by":[57,72],"International":[59],"Mouse":[60],"Phenotyping":[61],"Consortium":[62],"(IMPC).":[63],"Large":[64],"volumes":[65],"image":[67,220],"data":[68,111],"are":[69,182,229],"being":[70],"acquired":[71],"multiple":[73],"institutions":[74],"around":[75],"world":[77],"that":[78,117,151,227,232],"encompass":[79],"range":[81],"modalities,":[83],"proprietary":[84],"software":[85,137,149,193],"metadata.":[87],"To":[88],"facilitate":[89,152],"robust":[90],"downstream":[91],"analysis,":[92],"images":[93,128,160,228,237],"metadata":[95],"must":[96],"be":[97],"standardized":[98],"account":[100],"these":[102],"differences.":[103],"As":[104],"an":[105,197],"open":[106],"scientific":[107],"enterprise,":[108],"making":[109],"readily":[112],"accessible":[113,184],"essential":[115],"so":[116,231],"members":[118],"biomedical":[120],"clinical":[122],"research":[123],"communities":[124],"can":[125,234],"study":[126],"themselves":[130],"without":[131],"need":[133],"highly":[135],"specialized":[136],"or":[138,242],"technical":[139],"expertise.":[140],"this":[142],"article,":[143],"we":[144,223],"present":[145],"platform":[147],"tools":[150],"upload,":[154],"analysis":[155,216],"dissemination":[157,218],"3D":[159],"IMPC.":[163],"Over":[164],"750":[165],"reconstructions":[166],"from":[167],"80":[168],"embryonic":[169],"lethal":[170],"subviable":[172],"lines":[173],"been":[175],"captured":[176],"date,":[178],"all":[179,192],"which":[181],"openly":[183],"at":[185],"mousephenotype.org.":[186],"Although":[187],"designed":[188],"IMPC,":[191],"available":[195],"under":[196],"open-source":[198],"licence":[199],"others":[201],"use":[203],"develop":[205],"further.":[206],"Ongoing":[207],"developments":[208],"aim":[209,224],"increase":[211],"throughput":[212],"improve":[214],"data.":[221],"Furthermore,":[222],"ensure":[226],"searchable":[230],"users":[233],"locate":[235],"relevant":[236],"associated":[238],"with":[239],"genes,":[240],"phenotypes":[241],"human":[243],"diseases":[244],"interest.":[246]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":4},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
