{"id":"https://openalex.org/W2531174439","doi":"https://doi.org/10.1093/bib/bbw099","title":"Combinatorial epigenetic regulation of non-coding RNAs has profound effects on oncogenic pathways in breast cancer subtypes","display_name":"Combinatorial epigenetic regulation of non-coding RNAs has profound effects on oncogenic pathways in breast cancer subtypes","publication_year":2016,"publication_date":"2016-10-03","ids":{"openalex":"https://openalex.org/W2531174439","doi":"https://doi.org/10.1093/bib/bbw099","mag":"2531174439","pmid":"https://pubmed.ncbi.nlm.nih.gov/27742663"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbw099","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbw099","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5076495142","display_name":"Juan Xu","orcid":"https://orcid.org/0000-0002-3709-4165"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Juan Xu","raw_affiliation_strings":["College of Bioinformatics Science and Technology at Harbin Medical University, China"],"affiliations":[{"raw_affiliation_string":"College of Bioinformatics Science and Technology at Harbin Medical University, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003723166","display_name":"Zishan Wang","orcid":"https://orcid.org/0000-0002-5980-4711"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"ZiShan Wang","raw_affiliation_strings":["College of Bioinformatics Science and Technology at Harbin Medical University, China"],"affiliations":[{"raw_affiliation_string":"College of Bioinformatics Science and Technology at Harbin Medical University, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100429144","display_name":"Shengli Li","orcid":"https://orcid.org/0000-0001-5430-303X"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shengli Li","raw_affiliation_strings":["College of Bioinformatics Science and Technology at Harbin Medical University, China"],"affiliations":[{"raw_affiliation_string":"College of Bioinformatics Science and Technology at Harbin Medical University, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090963179","display_name":"Juan Chen","orcid":"https://orcid.org/0000-0002-7959-335X"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Juan Chen","raw_affiliation_strings":["College of Bioinformatics Science and Technology at Harbin Medical University, China"],"affiliations":[{"raw_affiliation_string":"College of Bioinformatics Science and Technology at Harbin Medical University, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077632077","display_name":"Jinwen Zhang","orcid":"https://orcid.org/0000-0001-8828-114X"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jinwen Zhang","raw_affiliation_strings":["College of Bioinformatics Science and Technology at Harbin Medical University, China"],"affiliations":[{"raw_affiliation_string":"College of Bioinformatics Science and Technology at Harbin Medical University, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032110552","display_name":"Chunjie Jiang","orcid":"https://orcid.org/0000-0002-3033-092X"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chunjie Jiang","raw_affiliation_strings":["College of Bioinformatics Science and Technology at Harbin Medical University, China"],"affiliations":[{"raw_affiliation_string":"College of Bioinformatics Science and Technology at Harbin Medical University, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087648864","display_name":"Zheng Zhao","orcid":"https://orcid.org/0000-0001-8945-9632"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zheng Zhao","raw_affiliation_strings":["College of Bioinformatics Science and Technology at Harbin Medical University, China"],"affiliations":[{"raw_affiliation_string":"College of Bioinformatics Science and Technology at Harbin Medical University, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100336827","display_name":"Jing Li","orcid":"https://orcid.org/0000-0001-9392-6600"},"institutions":[{"id":"https://openalex.org/I192327786","display_name":"Heilongjiang University of Chinese Medicine","ror":"https://ror.org/05x1ptx12","country_code":"CN","type":"education","lineage":["https://openalex.org/I192327786"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jing Li","raw_affiliation_strings":["Hospital of Heilongjiang University of Chinese Medicine, China"],"affiliations":[{"raw_affiliation_string":"Hospital of Heilongjiang University of Chinese Medicine, China","institution_ids":["https://openalex.org/I192327786"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100389127","display_name":"Yongsheng Li","orcid":"https://orcid.org/0000-0003-1914-0727"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yongsheng Li","raw_affiliation_strings":["College of Bioinformatics Science and Technology at Harbin Medical University, China"],"affiliations":[{"raw_affiliation_string":"College of Bioinformatics Science and Technology at Harbin Medical University, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100445596","display_name":"Xia Li","orcid":"https://orcid.org/0000-0002-9794-2648"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xia Li","raw_affiliation_strings":["College of Bioinformatics Science and Technology at Harbin Medical University, China"],"affiliations":[{"raw_affiliation_string":"College of Bioinformatics Science and Technology at Harbin Medical University, China","institution_ids":["https://openalex.org/I156144747"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5100445596"],"corresponding_institution_ids":["https://openalex.org/I156144747"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":0.8852,"has_fulltext":false,"cited_by_count":23,"citation_normalized_percentile":{"value":0.73212505,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"19","issue":"1","first_page":"bbw099","last_page":"bbw099"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/epigenetics","display_name":"Epigenetics","score":0.9007693529129028},{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.7932162284851074},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7763577699661255},{"id":"https://openalex.org/keywords/non-coding-rna","display_name":"Non-coding RNA","score":0.6475834250450134},{"id":"https://openalex.org/keywords/breast-cancer","display_name":"Breast cancer","score":0.5725992918014526},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.5690054893493652},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5388827323913574},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5338600277900696},{"id":"https://openalex.org/keywords/epigenesis","display_name":"Epigenesis","score":0.5020878314971924},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.48371580243110657},{"id":"https://openalex.org/keywords/regulation-of-gene-expression","display_name":"Regulation of gene expression","score":0.45225855708122253},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.4391821324825287},{"id":"https://openalex.org/keywords/dna-methylation","display_name":"DNA methylation","score":0.37545710802078247},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3501153588294983},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.34854164719581604}],"concepts":[{"id":"https://openalex.org/C41091548","wikidata":"https://www.wikidata.org/wiki/Q26939","display_name":"Epigenetics","level":3,"score":0.9007693529129028},{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.7932162284851074},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7763577699661255},{"id":"https://openalex.org/C194993378","wikidata":"https://www.wikidata.org/wiki/Q427087","display_name":"Non-coding RNA","level":4,"score":0.6475834250450134},{"id":"https://openalex.org/C530470458","wikidata":"https://www.wikidata.org/wiki/Q128581","display_name":"Breast cancer","level":3,"score":0.5725992918014526},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.5690054893493652},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5388827323913574},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5338600277900696},{"id":"https://openalex.org/C179463898","wikidata":"https://www.wikidata.org/wiki/Q10273301","display_name":"Epigenesis","level":5,"score":0.5020878314971924},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.48371580243110657},{"id":"https://openalex.org/C165864922","wikidata":"https://www.wikidata.org/wiki/Q411391","display_name":"Regulation of gene expression","level":3,"score":0.45225855708122253},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.4391821324825287},{"id":"https://openalex.org/C190727270","wikidata":"https://www.wikidata.org/wiki/Q874745","display_name":"DNA methylation","level":4,"score":0.37545710802078247},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3501153588294983},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.34854164719581604}],"mesh":[{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006657","descriptor_name":"Histones","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006657","descriptor_name":"Histones","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006657","descriptor_name":"Histones","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015972","descriptor_name":"Gene Expression Regulation, Neoplastic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015972","descriptor_name":"Gene Expression Regulation, Neoplastic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015972","descriptor_name":"Gene Expression Regulation, Neoplastic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016022","descriptor_name":"Case-Control Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016022","descriptor_name":"Case-Control Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016022","descriptor_name":"Case-Control Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D044127","descriptor_name":"Epigenesis, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D044127","descriptor_name":"Epigenesis, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D044127","descriptor_name":"Epigenesis, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063646","descriptor_name":"Carcinogenesis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D063646","descriptor_name":"Carcinogenesis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D063646","descriptor_name":"Carcinogenesis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D063646","descriptor_name":"Carcinogenesis","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D063646","descriptor_name":"Carcinogenesis","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D063646","descriptor_name":"Carcinogenesis","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbw099","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbw099","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:27742663","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27742663","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.7799999713897705,"display_name":"Good health and well-being"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":61,"referenced_works":["https://openalex.org/W1597735813","https://openalex.org/W1662652967","https://openalex.org/W1824831911","https://openalex.org/W1977372263","https://openalex.org/W1980503920","https://openalex.org/W1989961697","https://openalex.org/W1992213480","https://openalex.org/W1997656721","https://openalex.org/W2002621804","https://openalex.org/W2006097492","https://openalex.org/W2008945738","https://openalex.org/W2015416439","https://openalex.org/W2016106370","https://openalex.org/W2021341670","https://openalex.org/W2027010998","https://openalex.org/W2027460075","https://openalex.org/W2027533075","https://openalex.org/W2027873015","https://openalex.org/W2029919331","https://openalex.org/W2030181022","https://openalex.org/W2039345836","https://openalex.org/W2057846741","https://openalex.org/W2058865073","https://openalex.org/W2071903213","https://openalex.org/W2075828428","https://openalex.org/W2083687191","https://openalex.org/W2087971080","https://openalex.org/W2096083625","https://openalex.org/W2096283457","https://openalex.org/W2096465161","https://openalex.org/W2097092987","https://openalex.org/W2099343472","https://openalex.org/W2103318407","https://openalex.org/W2105347414","https://openalex.org/W2106210472","https://openalex.org/W2108266886","https://openalex.org/W2111471857","https://openalex.org/W2112012611","https://openalex.org/W2112192177","https://openalex.org/W2114912562","https://openalex.org/W2117692326","https://openalex.org/W2128768066","https://openalex.org/W2128983843","https://openalex.org/W2133658633","https://openalex.org/W2134118500","https://openalex.org/W2135836598","https://openalex.org/W2137343216","https://openalex.org/W2141458291","https://openalex.org/W2146573461","https://openalex.org/W2146907783","https://openalex.org/W2152508639","https://openalex.org/W2153210075","https://openalex.org/W2153806249","https://openalex.org/W2154722286","https://openalex.org/W2162674813","https://openalex.org/W2165437648","https://openalex.org/W2318935314","https://openalex.org/W2325309096","https://openalex.org/W2340659197","https://openalex.org/W2910065277","https://openalex.org/W6715535174"],"related_works":["https://openalex.org/W2214376880","https://openalex.org/W3212149434","https://openalex.org/W2073893804","https://openalex.org/W2291484187","https://openalex.org/W4379517748","https://openalex.org/W2031458863","https://openalex.org/W2306525395","https://openalex.org/W2022797399","https://openalex.org/W2488545743","https://openalex.org/W2082768186"],"abstract_inverted_index":{"Although":[0],"systematic":[1],"genomic":[2],"studies":[3],"have":[4],"identified":[5],"a":[6,82,92,134],"broad":[7],"spectrum":[8],"of":[9,21,25,37,56,73,84,103,117,120,136,153,158,181,186,196],"non-coding":[10,42],"RNAs":[11,43],"(ncRNAs)":[12],"that":[13,100,143,165],"are":[14],"involved":[15,149],"in":[16,45,62,91,150,174,198],"breast":[17,47,199],"cancer,":[18],"our":[19,97,156],"understanding":[20,180],"the":[22,34,71,114,124,129,182,194],"epigenetic":[23,35,54,88,159,184],"dysregulation":[24,116],"those":[26],"ncRNAs":[27,76,146,197],"remains":[28],"limited.":[29],"Here,":[30],"we":[31],"systematically":[32],"analysed":[33],"alterations":[36,55,132],"microRNAs":[38],"(miRNAs)":[39],"and":[40,51,58,86,189],"long":[41],"(lncRNAs)":[44],"two":[46,175],"cancer":[48,64,166,200],"subtypes":[49],"(luminal":[50],"basal).":[52],"Widespread":[53],"miRNAs":[57],"lncRNAs":[59],"were":[60,77,147],"observed":[61],"both":[63],"subtypes.":[65,176,201],"In":[66,95],"contrast":[67],"to":[68],"protein-coding":[69],"genes,":[70],"majority":[72],"epigenetically":[74,144],"dysregulated":[75,145],"shared":[78],"between":[79],"subtypes,":[80],"but":[81],"subset":[83],"transcriptomic":[85],"corresponding":[87],"changes":[89],"occurred":[90],"subtype-specific":[93],"manner.":[94],"addition,":[96],"findings":[98],"suggested":[99],"various":[101],"types":[102],"epi-modifications":[104],"might":[105],"synergistically":[106],"modulate":[107],"ncRNA":[108,187],"transcription.":[109],"Our":[110],"observations":[111],"further":[112],"highlighted":[113],"complementary":[115],"epi-modifications,":[118],"particularly":[119],"miRNA":[121,161],"members":[122],"within":[123],"same":[125,130],"family,":[126],"which":[127],"produced":[128],"directed":[131],"as":[133],"result":[135],"diverse":[137],"epi-modifications.":[138],"Functional":[139],"enrichment":[140],"analysis":[141,157],"revealed":[142,164],"significantly":[148],"several":[151],"hallmarks":[152],"cancers.":[154],"Finally,":[155],"modification-mediated":[160],"regulatory":[162],"networks":[163],"progression":[167],"was":[168],"associated":[169],"with":[170],"specific":[171],"miRNA-gene":[172],"modules":[173],"This":[177],"study":[178],"enhances":[179],"aberrant":[183],"patterns":[185],"expression":[188],"provides":[190],"new":[191],"insights":[192],"into":[193],"functions":[195]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":3}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
