{"id":"https://openalex.org/W2527545321","doi":"https://doi.org/10.1093/bib/bbw082","title":"Optimization of cell lines as tumour models by integrating multi-omics data","display_name":"Optimization of cell lines as tumour models by integrating multi-omics data","publication_year":2016,"publication_date":"2016-10-02","ids":{"openalex":"https://openalex.org/W2527545321","doi":"https://doi.org/10.1093/bib/bbw082","mag":"2527545321","pmid":"https://pubmed.ncbi.nlm.nih.gov/27694350"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbw082","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbw082","pdf_url":"https://academic.oup.com/bib/article-pdf/18/3/515/25409306/bbw082.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/18/3/515/25409306/bbw082.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5045109421","display_name":"Ning Zhao","orcid":null},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ning Zhao","raw_affiliation_strings":["College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, China"],"affiliations":[{"raw_affiliation_string":"College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102760072","display_name":"Yongjing Liu","orcid":"https://orcid.org/0000-0001-6746-3913"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yongjing Liu","raw_affiliation_strings":["College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, China"],"affiliations":[{"raw_affiliation_string":"College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101088656","display_name":"Yunzhen Wei","orcid":null},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yunzhen Wei","raw_affiliation_strings":["College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, China"],"affiliations":[{"raw_affiliation_string":"College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046199304","display_name":"Zichuang Yan","orcid":null},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zichuang Yan","raw_affiliation_strings":["College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, China"],"affiliations":[{"raw_affiliation_string":"College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100381992","display_name":"Qiang Zhang","orcid":"https://orcid.org/0000-0003-3045-4444"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qiang Zhang","raw_affiliation_strings":["College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, China"],"affiliations":[{"raw_affiliation_string":"College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030070835","display_name":"Cheng Wu","orcid":"https://orcid.org/0000-0003-2340-3788"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Cheng Wu","raw_affiliation_strings":["College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, China"],"affiliations":[{"raw_affiliation_string":"College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066813787","display_name":"Zhiqiang Chang","orcid":"https://orcid.org/0000-0002-3252-7961"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhiqiang Chang","raw_affiliation_strings":["College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, China"],"affiliations":[{"raw_affiliation_string":"College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5030808563","display_name":"Yan Xu","orcid":"https://orcid.org/0000-0002-1387-8459"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yan Xu","raw_affiliation_strings":["College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, China"],"affiliations":[{"raw_affiliation_string":"College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, China","institution_ids":["https://openalex.org/I156144747"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5030808563"],"corresponding_institution_ids":["https://openalex.org/I156144747"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":1.1381,"has_fulltext":true,"cited_by_count":22,"citation_normalized_percentile":{"value":0.7668063,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"18","issue":"3","first_page":"bbw082","last_page":"bbw082"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10231","display_name":"Pancreatic and Hepatic Oncology Research","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cell-culture","display_name":"Cell culture","score":0.6537283658981323},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6127569079399109},{"id":"https://openalex.org/keywords/cancer-cell-lines","display_name":"Cancer cell lines","score":0.5460072755813599},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.5048614144325256},{"id":"https://openalex.org/keywords/carcinogenesis","display_name":"Carcinogenesis","score":0.4858984351158142},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.47888606786727905},{"id":"https://openalex.org/keywords/cell","display_name":"Cell","score":0.4188826084136963},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3976466655731201},{"id":"https://openalex.org/keywords/cancer-cell","display_name":"Cancer cell","score":0.39175379276275635},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.35254955291748047},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.29039645195007324}],"concepts":[{"id":"https://openalex.org/C81885089","wikidata":"https://www.wikidata.org/wiki/Q189082","display_name":"Cell culture","level":2,"score":0.6537283658981323},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6127569079399109},{"id":"https://openalex.org/C2994372470","wikidata":"https://www.wikidata.org/wiki/Q4118072","display_name":"Cancer cell lines","level":4,"score":0.5460072755813599},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.5048614144325256},{"id":"https://openalex.org/C555283112","wikidata":"https://www.wikidata.org/wiki/Q1637543","display_name":"Carcinogenesis","level":3,"score":0.4858984351158142},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.47888606786727905},{"id":"https://openalex.org/C1491633281","wikidata":"https://www.wikidata.org/wiki/Q7868","display_name":"Cell","level":2,"score":0.4188826084136963},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3976466655731201},{"id":"https://openalex.org/C96232424","wikidata":"https://www.wikidata.org/wiki/Q4118072","display_name":"Cancer cell","level":3,"score":0.39175379276275635},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.35254955291748047},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.29039645195007324}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D045744","descriptor_name":"Cell Line, Tumor","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D045744","descriptor_name":"Cell Line, Tumor","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D045744","descriptor_name":"Cell Line, Tumor","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbw082","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbw082","pdf_url":"https://academic.oup.com/bib/article-pdf/18/3/515/25409306/bbw082.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:27694350","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27694350","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bib/bbw082","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbw082","pdf_url":"https://academic.oup.com/bib/article-pdf/18/3/515/25409306/bbw082.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.7200000286102295}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2527545321.pdf","grobid_xml":"https://content.openalex.org/works/W2527545321.grobid-xml"},"referenced_works_count":62,"referenced_works":["https://openalex.org/W1571953570","https://openalex.org/W1907982143","https://openalex.org/W1982328256","https://openalex.org/W1986349546","https://openalex.org/W1987222691","https://openalex.org/W1997338647","https://openalex.org/W2000248995","https://openalex.org/W2005829575","https://openalex.org/W2011069301","https://openalex.org/W2012627890","https://openalex.org/W2018044006","https://openalex.org/W2023568503","https://openalex.org/W2027855079","https://openalex.org/W2031146512","https://openalex.org/W2039554409","https://openalex.org/W2043398720","https://openalex.org/W2044433401","https://openalex.org/W2049137769","https://openalex.org/W2059300459","https://openalex.org/W2074958062","https://openalex.org/W2077271226","https://openalex.org/W2086528814","https://openalex.org/W2088484810","https://openalex.org/W2096000713","https://openalex.org/W2096283457","https://openalex.org/W2102726935","https://openalex.org/W2107953475","https://openalex.org/W2108643617","https://openalex.org/W2110065044","https://openalex.org/W2112947018","https://openalex.org/W2113001012","https://openalex.org/W2113791211","https://openalex.org/W2118151336","https://openalex.org/W2118258530","https://openalex.org/W2120295238","https://openalex.org/W2122147796","https://openalex.org/W2126172213","https://openalex.org/W2126220828","https://openalex.org/W2130072062","https://openalex.org/W2131273916","https://openalex.org/W2132630169","https://openalex.org/W2134787419","https://openalex.org/W2135405268","https://openalex.org/W2136467127","https://openalex.org/W2139345901","https://openalex.org/W2141783822","https://openalex.org/W2144883401","https://openalex.org/W2146681065","https://openalex.org/W2153056550","https://openalex.org/W2157825735","https://openalex.org/W2157852151","https://openalex.org/W2162151166","https://openalex.org/W2163235555","https://openalex.org/W2163316512","https://openalex.org/W2164729849","https://openalex.org/W2205266940","https://openalex.org/W2260372776","https://openalex.org/W2262414037","https://openalex.org/W2318032547","https://openalex.org/W2480455979","https://openalex.org/W6634118353","https://openalex.org/W6676792355"],"related_works":["https://openalex.org/W1967821671","https://openalex.org/W3030842346","https://openalex.org/W1969795570","https://openalex.org/W2125789691","https://openalex.org/W2063781606","https://openalex.org/W4290263427","https://openalex.org/W2965386709","https://openalex.org/W2405593806","https://openalex.org/W4242472523","https://openalex.org/W2384201665"],"abstract_inverted_index":{"Cell":[0,91],"lines":[1,21,37,58,72,108,134,148,175,190],"are":[2,94,118,153,176],"widely":[3],"used":[4,68,95,173],"as":[5,140],"in":[6,38,150,159,193,194],"vitro":[7,160,195],"models":[8,162],"of":[9,15,34,48,116,170,203],"tumorigenesis.":[10],"However,":[11],"an":[12],"increasing":[13],"number":[14,79],"researchers":[16],"have":[17,135],"found":[18,119],"that":[19,168],"cell":[20,30,36,57,71,102,107,133,147,174,189],"differ":[22],"from":[23,83],"their":[24,141],"sourced":[25],"tumour":[26,143],"samples":[27],"after":[28],"long-term":[29],"culture.":[31],"The":[32,84,145],"application":[33],"unsuitable":[35,158],"experiments":[39,112,196],"will":[40],"affect":[41],"the":[42,46,66,89,105,122,131,136,171,201],"experimental":[43],"accuracy":[44,202],"and":[45,80,88,101,197],"treatment":[47,217],"patients.":[49],"Therefore,":[50],"it":[51],"is":[52],"imperative":[53],"to":[54,69,96,109,156,191,199],"identify":[55],"optimal":[56,132],"for":[59,111,113,187,213],"each":[60],"cancer":[61,161,179,205],"type.":[62],"Here,":[63],"we":[64,183],"review":[65],"methods":[67],"evaluate":[70],"since":[73],"2005.":[74],"Furthermore,":[75,207],"gene":[76],"expression,":[77],"copy":[78],"mutation":[81],"profiles":[82],"Cancer":[85,90],"Genome":[86],"Atlas":[87],"Line":[92],"Encyclopedia":[93],"calculate":[97],"similarity":[98],"between":[99],"tumours":[100],"lines.":[103],"Then,":[104],"ideal":[106,188],"use":[110,192],"eight":[114],"types":[115],"cancers":[117],"by":[120],"combining":[121],"results":[123],"with":[124],"Gene":[125],"Ontology":[126],"functional":[127],"similarity.":[128],"After":[129],"verification,":[130],"same":[137],"genomic":[138],"characteristics":[139],"homologous":[142],"samples.":[144],"contaminated":[146],"identified":[149],"previous":[151],"research":[152,209],"also":[154],"determined":[155],"be":[157],"here.":[163],"Moreover,":[164],"our":[165],"study":[166],"suggests":[167],"some":[169],"commonly":[172],"not":[177],"suitable":[178],"models.":[180],"In":[181],"summary,":[182],"provide":[184],"a":[185,211],"reference":[186],"contribute":[198],"improving":[200],"future":[204],"research.":[206],"this":[208],"provides":[210],"foundation":[212],"identifying":[214],"more":[215],"effective":[216],"strategies.":[218]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2016-10-07T00:00:00"}
