{"id":"https://openalex.org/W2506377511","doi":"https://doi.org/10.1093/bib/bbw066","title":"Protein\u2013protein interactions: detection, reliability assessment and applications","display_name":"Protein\u2013protein interactions: detection, reliability assessment and applications","publication_year":2016,"publication_date":"2016-07-21","ids":{"openalex":"https://openalex.org/W2506377511","doi":"https://doi.org/10.1093/bib/bbw066","mag":"2506377511","pmid":"https://pubmed.ncbi.nlm.nih.gov/27444371"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbw066","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbw066","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103182832","display_name":"Xiaoqing Peng","orcid":"https://orcid.org/0000-0002-4099-5183"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xiaoqing Peng","raw_affiliation_strings":["School of Information Science and Engineering, Central South University, Changsha, Hunan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Science and Engineering, Central South University, Changsha, Hunan, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100438360","display_name":"Jianxin Wang","orcid":"https://orcid.org/0000-0003-1516-0480"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jianxin Wang","raw_affiliation_strings":["School of Information Science and Engineering, Central South University, Changsha, Hunan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Science and Engineering, Central South University, Changsha, Hunan, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053073532","display_name":"Wei Peng","orcid":"https://orcid.org/0000-0002-9572-951X"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wei Peng","raw_affiliation_strings":["School of Information Science and Engineering, Central South University, Changsha, Hunan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Science and Engineering, Central South University, Changsha, Hunan, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091157395","display_name":"Fang\u2010Xiang Wu","orcid":"https://orcid.org/0000-0002-4593-9332"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fang-Xiang Wu","raw_affiliation_strings":["School of Information Science and Engineering, Central South University, Changsha, Hunan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Science and Engineering, Central South University, Changsha, Hunan, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101465265","display_name":"Yi Pan","orcid":"https://orcid.org/0000-0002-2766-3096"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yi Pan","raw_affiliation_strings":["School of Information Science and Engineering, Central South University, Changsha, Hunan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Science and Engineering, Central South University, Changsha, Hunan, China","institution_ids":["https://openalex.org/I139660479"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5103182832"],"corresponding_institution_ids":["https://openalex.org/I139660479"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":4.328,"has_fulltext":false,"cited_by_count":146,"citation_normalized_percentile":{"value":0.94852222,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"18","issue":"5","first_page":"bbw066","last_page":"bbw066"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/reliability","display_name":"Reliability (semiconductor)","score":0.6449570059776306},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6136940121650696},{"id":"https://openalex.org/keywords/reliability-engineering","display_name":"Reliability engineering","score":0.3896007537841797},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3584677577018738},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1488560140132904},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.10345450043678284}],"concepts":[{"id":"https://openalex.org/C43214815","wikidata":"https://www.wikidata.org/wiki/Q7310987","display_name":"Reliability (semiconductor)","level":3,"score":0.6449570059776306},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6136940121650696},{"id":"https://openalex.org/C200601418","wikidata":"https://www.wikidata.org/wiki/Q2193887","display_name":"Reliability engineering","level":1,"score":0.3896007537841797},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3584677577018738},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1488560140132904},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.10345450043678284},{"id":"https://openalex.org/C163258240","wikidata":"https://www.wikidata.org/wiki/Q25342","display_name":"Power (physics)","level":2,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbw066","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbw066","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:27444371","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27444371","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":156,"referenced_works":["https://openalex.org/W90097959","https://openalex.org/W133025315","https://openalex.org/W1589825577","https://openalex.org/W1630454103","https://openalex.org/W1647837393","https://openalex.org/W1918391659","https://openalex.org/W1926568554","https://openalex.org/W1967568262","https://openalex.org/W1973508741","https://openalex.org/W1974139890","https://openalex.org/W1975390541","https://openalex.org/W1976768790","https://openalex.org/W1976937534","https://openalex.org/W1979104937","https://openalex.org/W1981397772","https://openalex.org/W1985967447","https://openalex.org/W1988805210","https://openalex.org/W1989662318","https://openalex.org/W1990315216","https://openalex.org/W1991545801","https://openalex.org/W1992330798","https://openalex.org/W1993229737","https://openalex.org/W1993742718","https://openalex.org/W1999586982","https://openalex.org/W1999808266","https://openalex.org/W2000265519","https://openalex.org/W2003819708","https://openalex.org/W2007921075","https://openalex.org/W2009019945","https://openalex.org/W2009405916","https://openalex.org/W2010134474","https://openalex.org/W2010142885","https://openalex.org/W2011340259","https://openalex.org/W2011353204","https://openalex.org/W2011986160","https://openalex.org/W2013503778","https://openalex.org/W2015151766","https://openalex.org/W2016385245","https://openalex.org/W2016621483","https://openalex.org/W2021961486","https://openalex.org/W2024057814","https://openalex.org/W2027439534","https://openalex.org/W2029574260","https://openalex.org/W2033138291","https://openalex.org/W2037558110","https://openalex.org/W2039473152","https://openalex.org/W2040177576","https://openalex.org/W2040411864","https://openalex.org/W2042445733","https://openalex.org/W2043618279","https://openalex.org/W2050583899","https://openalex.org/W2050721857","https://openalex.org/W2053906518","https://openalex.org/W2054954101","https://openalex.org/W2056092504","https://openalex.org/W2057311550","https://openalex.org/W2057545775","https://openalex.org/W2057616220","https://openalex.org/W2061439657","https://openalex.org/W2066626065","https://openalex.org/W2070331825","https://openalex.org/W2076723453","https://openalex.org/W2077386490","https://openalex.org/W2079007492","https://openalex.org/W2080182143","https://openalex.org/W2080922074","https://openalex.org/W2085002173","https://openalex.org/W2089226872","https://openalex.org/W2094566794","https://openalex.org/W2096410350","https://openalex.org/W2099913238","https://openalex.org/W2100025044","https://openalex.org/W2100070946","https://openalex.org/W2100148427","https://openalex.org/W2100434392","https://openalex.org/W2100761975","https://openalex.org/W2101181377","https://openalex.org/W2104009289","https://openalex.org/W2104315543","https://openalex.org/W2105089945","https://openalex.org/W2107710781","https://openalex.org/W2109685531","https://openalex.org/W2112657663","https://openalex.org/W2113553645","https://openalex.org/W2113654464","https://openalex.org/W2116117181","https://openalex.org/W2116447934","https://openalex.org/W2118169662","https://openalex.org/W2118971140","https://openalex.org/W2120744225","https://openalex.org/W2121507105","https://openalex.org/W2121564430","https://openalex.org/W2122076882","https://openalex.org/W2123318061","https://openalex.org/W2128796532","https://openalex.org/W2128900650","https://openalex.org/W2130638985","https://openalex.org/W2130687290","https://openalex.org/W2132582966","https://openalex.org/W2133548874","https://openalex.org/W2133654213","https://openalex.org/W2134508297","https://openalex.org/W2135738422","https://openalex.org/W2135950914","https://openalex.org/W2136185148","https://openalex.org/W2136316164","https://openalex.org/W2137804845","https://openalex.org/W2140280811","https://openalex.org/W2142796125","https://openalex.org/W2142905666","https://openalex.org/W2143322392","https://openalex.org/W2144344817","https://openalex.org/W2145080853","https://openalex.org/W2145290999","https://openalex.org/W2149148688","https://openalex.org/W2149310258","https://openalex.org/W2150296325","https://openalex.org/W2151176490","https://openalex.org/W2151412657","https://openalex.org/W2152687832","https://openalex.org/W2152705149","https://openalex.org/W2153411138","https://openalex.org/W2153624566","https://openalex.org/W2155653061","https://openalex.org/W2156537287","https://openalex.org/W2157082398","https://openalex.org/W2158616672","https://openalex.org/W2160677068","https://openalex.org/W2161922860","https://openalex.org/W2163736554","https://openalex.org/W2164566356","https://openalex.org/W2166344835","https://openalex.org/W2166699767","https://openalex.org/W2166994421","https://openalex.org/W2171403830","https://openalex.org/W2172049947","https://openalex.org/W2176372762","https://openalex.org/W2177447282","https://openalex.org/W2184405731","https://openalex.org/W2203723645","https://openalex.org/W2206052936","https://openalex.org/W2287383879","https://openalex.org/W2296521590","https://openalex.org/W2325016666","https://openalex.org/W2334130133","https://openalex.org/W2337526125","https://openalex.org/W2341018731","https://openalex.org/W2444226747","https://openalex.org/W2521245737","https://openalex.org/W2915975108","https://openalex.org/W4231597948","https://openalex.org/W4389024465","https://openalex.org/W6661060035","https://openalex.org/W6682911404","https://openalex.org/W6684051491","https://openalex.org/W6859265914"],"related_works":["https://openalex.org/W2033512842","https://openalex.org/W4322734194","https://openalex.org/W3005535424","https://openalex.org/W4233600955","https://openalex.org/W2913665393","https://openalex.org/W2369695847","https://openalex.org/W2994319598","https://openalex.org/W2047067935","https://openalex.org/W1607054433","https://openalex.org/W2110842462"],"abstract_inverted_index":{"Protein-protein":[0],"interactions":[1],"(PPIs)":[2],"participate":[3],"in":[4,9,37,48],"all":[5],"important":[6,41],"biological":[7],"processes":[8],"living":[10,50],"organisms,":[11],"such":[12],"as":[13],"catalyzing":[14],"metabolic":[15],"reactions,":[16],"DNA":[17,19],"replication,":[18],"transcription,":[20],"responding":[21],"to":[22,30,42,74,101,111],"stimuli":[23],"and":[24,63,118,138,181,202],"transporting":[25],"molecules":[26],"from":[27],"one":[28,108],"location":[29],"another.":[31],"To":[32],"reveal":[33],"the":[34,49,96,113,121,129,143,166,175,185],"function":[35],"mechanisms":[36],"cells,":[38],"it":[39],"is":[40,109],"identify":[43],"PPIs":[44,56,68,117,180],"that":[45,98],"take":[46],"place":[47],"organism.":[51],"A":[52],"large":[53],"number":[54],"of":[55,115,132,145,147,165,184,187],"have":[57,69,81],"been":[58,70,82],"discovered":[59],"by":[60],"high-throughput":[61],"experiments":[62],"computational":[64,79],"methods.":[65,150],"However,":[66],"false-positive":[67],"introduced":[71],"too.":[72],"Therefore,":[73],"obtain":[75],"reliable":[76,104,136,179,188,206],"PPIs,":[77,137],"many":[78],"methods":[80,86,97,133,201],"proposed.":[83],"Generally,":[84],"these":[85,148],"can":[87],"be":[88],"classified":[89],"into":[90,169],"two":[91,130],"categories.":[92],"One":[93],"category":[94],"includes":[95],"are":[99],"designed":[100,110],"determine":[102],"new":[103],"PPIs.":[105,207],"The":[106],"other":[107],"assess":[112],"reliability":[114,163],"existing":[116],"filter":[119],"out":[120],"unreliable":[122],"ones.":[123],"In":[124],"this":[125],"article,":[126],"we":[127,153,172],"review":[128],"kinds":[131],"for":[134,177,198,204],"detecting":[135],"then":[139],"focus":[140],"on":[141],"evaluating":[142],"performance":[144],"some":[146,196],"typical":[149],"Later":[151],"on,":[152],"also":[154],"enumerate":[155],"several":[156],"PPI":[157,167,189],"network-based":[158],"applications":[159],"with":[160],"taking":[161],"a":[162],"assessment":[164],"data":[168],"consideration.":[170],"Finally,":[171],"will":[173,193],"discuss":[174],"challenges":[176],"obtaining":[178,205],"future":[182],"directions":[183],"construction":[186],"networks.":[190],"Our":[191],"research":[192],"provide":[194],"readers":[195],"guidance":[197],"choosing":[199],"appropriate":[200],"features":[203]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":18},{"year":2024,"cited_by_count":31},{"year":2023,"cited_by_count":21},{"year":2022,"cited_by_count":13},{"year":2021,"cited_by_count":23},{"year":2020,"cited_by_count":11},{"year":2019,"cited_by_count":10},{"year":2018,"cited_by_count":9},{"year":2017,"cited_by_count":8}],"updated_date":"2026-07-15T18:14:33.161393","created_date":"2025-10-10T00:00:00"}
