{"id":"https://openalex.org/W2460716387","doi":"https://doi.org/10.1093/bib/bbw056","title":"Dynamic and modular gene regulatory networks drive the development of gametogenesis","display_name":"Dynamic and modular gene regulatory networks drive the development of gametogenesis","publication_year":2016,"publication_date":"2016-07-03","ids":{"openalex":"https://openalex.org/W2460716387","doi":"https://doi.org/10.1093/bib/bbw056","mag":"2460716387","pmid":"https://pubmed.ncbi.nlm.nih.gov/27373733"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbw056","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbw056","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5055256049","display_name":"Dongxue Che","orcid":null},"institutions":[{"id":"https://openalex.org/I89652312","display_name":"Northwest A&F University","ror":"https://ror.org/0051rme32","country_code":"CN","type":"education","lineage":["https://openalex.org/I89652312"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Dongxue Che","raw_affiliation_strings":["College of Life Sciences, Northwest A&F University, Yangling, Shaanxi, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Life Sciences, Northwest A&F University, Yangling, Shaanxi, China","institution_ids":["https://openalex.org/I89652312"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110764901","display_name":"Yang Wang","orcid":"https://orcid.org/0009-0001-2403-1448"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yang Wang","raw_affiliation_strings":["College of Life Sciences, Peking University, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Life Sciences, Peking University, Beijing, China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112059729","display_name":"Wei-Yang Bai","orcid":null},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Weiyang Bai","raw_affiliation_strings":["School of Life Science and Technology, Harbin Institute of Technology, Harbin, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Life Science and Technology, Harbin Institute of Technology, Harbin, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087472249","display_name":"Leijie Li","orcid":"https://orcid.org/0000-0001-9507-1183"},"institutions":[{"id":"https://openalex.org/I89652312","display_name":"Northwest A&F University","ror":"https://ror.org/0051rme32","country_code":"CN","type":"education","lineage":["https://openalex.org/I89652312"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Leijie Li","raw_affiliation_strings":["College of Life Sciences, Northwest A&F University, Yangling, Shaanxi, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Life Sciences, Northwest A&F University, Yangling, Shaanxi, China","institution_ids":["https://openalex.org/I89652312"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072347321","display_name":"Guiyou Liu","orcid":"https://orcid.org/0000-0002-1126-2888"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guiyou Liu","raw_affiliation_strings":["School of Life Science and Technology, Harbin Institute of Technology, Harbin, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Life Science and Technology, Harbin Institute of Technology, Harbin, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031549863","display_name":"Liangcai Zhang","orcid":null},"institutions":[{"id":"https://openalex.org/I74775410","display_name":"Rice University","ror":"https://ror.org/008zs3103","country_code":"US","type":"education","lineage":["https://openalex.org/I74775410"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Liangcai Zhang","raw_affiliation_strings":["Department of Statistics, Rice University, 6100 Main St. Houston, TX,USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Statistics, Rice University, 6100 Main St. Houston, TX,USA","institution_ids":["https://openalex.org/I74775410"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001300435","display_name":"Yongchun Zuo","orcid":"https://orcid.org/0000-0002-6065-7835"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yongchun Zuo","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081501610","display_name":"Shiheng Tao","orcid":"https://orcid.org/0000-0002-6076-6038"},"institutions":[{"id":"https://openalex.org/I2722730","display_name":"Inner Mongolia University","ror":"https://ror.org/0106qb496","country_code":"CN","type":"education","lineage":["https://openalex.org/I2722730"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shiheng Tao","raw_affiliation_strings":["National Research Center for Animal Transgenic Biotechnology, Inner Mongolia University, Hohhot, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Research Center for Animal Transgenic Biotechnology, Inner Mongolia University, Hohhot, China","institution_ids":["https://openalex.org/I2722730"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001954462","display_name":"Jinlian Hua","orcid":"https://orcid.org/0000-0001-9788-8592"},"institutions":[{"id":"https://openalex.org/I89652312","display_name":"Northwest A&F University","ror":"https://ror.org/0051rme32","country_code":"CN","type":"education","lineage":["https://openalex.org/I89652312"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jinlian Hua","raw_affiliation_strings":["College of Life Sciences, Northwest A&F University, Yangling, Shaanxi, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Life Sciences, Northwest A&F University, Yangling, Shaanxi, China","institution_ids":["https://openalex.org/I89652312"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5060605576","display_name":"Mingzhi Liao","orcid":"https://orcid.org/0000-0002-5216-5742"},"institutions":[{"id":"https://openalex.org/I89652312","display_name":"Northwest A&F University","ror":"https://ror.org/0051rme32","country_code":"CN","type":"education","lineage":["https://openalex.org/I89652312"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Mingzhi Liao","raw_affiliation_strings":["College of Life Sciences, Northwest A&F University, Yangling, Shaanxi, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Life Sciences, Northwest A&F University, Yangling, Shaanxi, China","institution_ids":["https://openalex.org/I89652312"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5060605576"],"corresponding_institution_ids":["https://openalex.org/I89652312"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":0.5222,"has_fulltext":false,"cited_by_count":15,"citation_normalized_percentile":{"value":0.71538719,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"18","issue":"4","first_page":"bbw056","last_page":"bbw056"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9761000275611877,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9761000275611877,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.9700000286102295,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10364","display_name":"Reproductive Biology and Fertility","score":0.9585999846458435,"subfield":{"id":"https://openalex.org/subfields/2739","display_name":"Public Health, Environmental and Occupational Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/gametogenesis","display_name":"Gametogenesis","score":0.9842995405197144},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7637619972229004},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4619140625},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.46031779050827026},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.32521533966064453}],"concepts":[{"id":"https://openalex.org/C39297687","wikidata":"https://www.wikidata.org/wiki/Q1410510","display_name":"Gametogenesis","level":4,"score":0.9842995405197144},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7637619972229004},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4619140625},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.46031779050827026},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.32521533966064453},{"id":"https://openalex.org/C87073359","wikidata":"https://www.wikidata.org/wiki/Q33196","display_name":"Embryogenesis","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005718","descriptor_name":"Gametogenesis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005718","descriptor_name":"Gametogenesis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005718","descriptor_name":"Gametogenesis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008540","descriptor_name":"Meiosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008540","descriptor_name":"Meiosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008540","descriptor_name":"Meiosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbw056","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbw056","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:27373733","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27373733","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":55,"referenced_works":["https://openalex.org/W108107911","https://openalex.org/W950821216","https://openalex.org/W1544009106","https://openalex.org/W1647729745","https://openalex.org/W1647856483","https://openalex.org/W1968761064","https://openalex.org/W1977560610","https://openalex.org/W1980190728","https://openalex.org/W1981509058","https://openalex.org/W1982560183","https://openalex.org/W1995391294","https://openalex.org/W1999722941","https://openalex.org/W2003516452","https://openalex.org/W2005673428","https://openalex.org/W2016113290","https://openalex.org/W2021787411","https://openalex.org/W2022894463","https://openalex.org/W2032655916","https://openalex.org/W2043570667","https://openalex.org/W2047245066","https://openalex.org/W2051084770","https://openalex.org/W2056782561","https://openalex.org/W2058190388","https://openalex.org/W2058597229","https://openalex.org/W2061901927","https://openalex.org/W2064559242","https://openalex.org/W2067338267","https://openalex.org/W2071345957","https://openalex.org/W2079039628","https://openalex.org/W2081425450","https://openalex.org/W2082565035","https://openalex.org/W2088062845","https://openalex.org/W2096438591","https://openalex.org/W2097065948","https://openalex.org/W2099371761","https://openalex.org/W2100699132","https://openalex.org/W2113444408","https://openalex.org/W2113908546","https://openalex.org/W2114951954","https://openalex.org/W2119097398","https://openalex.org/W2122863289","https://openalex.org/W2134526812","https://openalex.org/W2134561555","https://openalex.org/W2135425797","https://openalex.org/W2138793275","https://openalex.org/W2141458291","https://openalex.org/W2144001613","https://openalex.org/W2144656637","https://openalex.org/W2161604082","https://openalex.org/W2174949379","https://openalex.org/W2223807384","https://openalex.org/W2256212288","https://openalex.org/W2283435117","https://openalex.org/W2295597229","https://openalex.org/W2308931471"],"related_works":["https://openalex.org/W112850698","https://openalex.org/W2082860237","https://openalex.org/W3033714446","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W4281559003","https://openalex.org/W1990804418","https://openalex.org/W4211112113","https://openalex.org/W1993764875","https://openalex.org/W2034625591"],"abstract_inverted_index":{"Gametogenesis":[0,148],"is":[1,23,35,154],"a":[2,184],"complex":[3],"process,":[4],"which":[5,106,153],"includes":[6],"mitosis":[7],"and":[8,10,17,25,66,81,102,124,138,164,169,187,196,201],"meiosis":[9],"results":[11],"in":[12,78,171,198],"the":[13,49,55,86,90,108,112,116,126,162,172,190,193],"production":[14],"of":[15,21,37,52,57,118,130,166,175,192],"ovum":[16],"sperm.":[18],"The":[19,135],"development":[20,117],"gametogenesis":[22,53,72,96,136,194],"dynamic":[24,50,113],"needs":[26],"many":[27],"different":[28,83,104,131],"genes":[29,73,97,137,168,177],"to":[30,89,189],"work":[31,182],"synergistically,":[32],"but":[33],"it":[34],"lack":[36],"global":[38],"perspective":[39,56,186],"research":[40],"about":[41,111,133,178],"this":[42,45,181],"process.":[43],"In":[44],"study,":[46],"we":[47,122],"detected":[48,123],"process":[51,114],"from":[54,144],"systems":[58],"biology":[59],"based":[60],"on":[61,93],"protein-protein":[62],"interaction":[63],"networks":[64],"(PPINs)":[65],"functional":[67,99],"analysis.":[68],"Results":[69],"showed":[70,98],"that":[71],"have":[74],"strong":[75],"synergistic":[76,91],"effects":[77,92],"PPINs":[79],"within":[80,101],"between":[82,103],"phases":[84,132],"during":[85,115],"development.":[87],"Addition":[88],"molecular":[94,128],"networks,":[95],"consistency":[100],"phases,":[105],"provides":[107],"further":[109],"evidence":[110],"gametogenesis.":[119,134,179],"At":[120],"last,":[121],"provided":[125,183],"core":[127],"modules":[129,140,170],"related":[139],"can":[141],"be":[142,159],"obtained":[143],"our":[145],"Web":[146],"site":[147],"Molecule":[149],"Online":[150],"(GMO,":[151],"http://gametsonline.nwsuaflmz.com/index.php),":[152],"freely":[155],"accessible.":[156],"GMO":[157],"may":[158],"helpful":[160],"for":[161],"reference":[163],"application":[165],"these":[167],"future":[173],"identification":[174],"key":[176],"Summary,":[180],"computational":[185],"frame":[188],"analysis":[191],"dynamics":[195],"modularity":[197],"both":[199],"human":[200],"mouse.":[202]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":2}],"updated_date":"2026-05-03T08:25:01.440150","created_date":"2025-10-10T00:00:00"}
