{"id":"https://openalex.org/W2415131672","doi":"https://doi.org/10.1093/bib/bbw044","title":"Embracing an integromic approach to tissue biomarker research in cancer: Perspectives and lessons learned","display_name":"Embracing an integromic approach to tissue biomarker research in cancer: Perspectives and lessons learned","publication_year":2016,"publication_date":"2016-06-02","ids":{"openalex":"https://openalex.org/W2415131672","doi":"https://doi.org/10.1093/bib/bbw044","mag":"2415131672","pmid":"https://pubmed.ncbi.nlm.nih.gov/27255914"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbw044","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbw044","pdf_url":"https://academic.oup.com/bib/article-pdf/18/4/634/25438283/bbw044.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bib/article-pdf/18/4/634/25438283/bbw044.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5044148216","display_name":"Gerald Li","orcid":"https://orcid.org/0000-0002-5617-6262"},"institutions":[{"id":"https://openalex.org/I126231945","display_name":"Queen's University Belfast","ror":"https://ror.org/00hswnk62","country_code":"GB","type":"education","lineage":["https://openalex.org/I126231945"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Gerald Li","raw_affiliation_strings":["Centre for Cancer Research and Cell Biology (CCRCB), Queen\u2019s University Belfast, Belfast, United Kingdom","Centre for Cancer Research and Cell Biology (CCRCB), Queen's University Belfast, Belfast, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Cancer Research and Cell Biology (CCRCB), Queen\u2019s University Belfast, Belfast, United Kingdom","institution_ids":["https://openalex.org/I126231945"]},{"raw_affiliation_string":"Centre for Cancer Research and Cell Biology (CCRCB), Queen's University Belfast, Belfast, United Kingdom","institution_ids":["https://openalex.org/I126231945"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055039884","display_name":"Peter Bankhead","orcid":"https://orcid.org/0000-0003-4851-8813"},"institutions":[{"id":"https://openalex.org/I126231945","display_name":"Queen's University Belfast","ror":"https://ror.org/00hswnk62","country_code":"GB","type":"education","lineage":["https://openalex.org/I126231945"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Peter Bankhead","raw_affiliation_strings":["Centre for Cancer Research and Cell Biology (CCRCB), Queen\u2019s University Belfast, Belfast, United Kingdom","Centre for Cancer Research and Cell Biology (CCRCB), Queen's University Belfast, Belfast, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Cancer Research and Cell Biology (CCRCB), Queen\u2019s University Belfast, Belfast, United Kingdom","institution_ids":["https://openalex.org/I126231945"]},{"raw_affiliation_string":"Centre for Cancer Research and Cell Biology (CCRCB), Queen's University Belfast, Belfast, United Kingdom","institution_ids":["https://openalex.org/I126231945"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068930694","display_name":"Philip D. Dunne","orcid":"https://orcid.org/0000-0001-9160-283X"},"institutions":[{"id":"https://openalex.org/I126231945","display_name":"Queen's University Belfast","ror":"https://ror.org/00hswnk62","country_code":"GB","type":"education","lineage":["https://openalex.org/I126231945"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Philip D Dunne","raw_affiliation_strings":["Centre for Cancer Research and Cell Biology (CCRCB), Queen\u2019s University Belfast, Belfast, United Kingdom","Centre for Cancer Research and Cell Biology (CCRCB), Queen's University Belfast, Belfast, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Cancer Research and Cell Biology (CCRCB), Queen\u2019s University Belfast, Belfast, United Kingdom","institution_ids":["https://openalex.org/I126231945"]},{"raw_affiliation_string":"Centre for Cancer Research and Cell Biology (CCRCB), Queen's University Belfast, Belfast, United Kingdom","institution_ids":["https://openalex.org/I126231945"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008176647","display_name":"Paul G. O\u2019Reilly","orcid":"https://orcid.org/0000-0002-3437-6167"},"institutions":[{"id":"https://openalex.org/I126231945","display_name":"Queen's University Belfast","ror":"https://ror.org/00hswnk62","country_code":"GB","type":"education","lineage":["https://openalex.org/I126231945"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Paul G O\u2019Reilly","raw_affiliation_strings":["Centre for Cancer Research and Cell Biology (CCRCB), Queen\u2019s University Belfast, Belfast, United Kingdom","Centre for Cancer Research and Cell Biology (CCRCB), Queen's University Belfast, Belfast, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Cancer Research and Cell Biology (CCRCB), Queen\u2019s University Belfast, Belfast, United Kingdom","institution_ids":["https://openalex.org/I126231945"]},{"raw_affiliation_string":"Centre for Cancer Research and Cell Biology (CCRCB), Queen's University Belfast, Belfast, United Kingdom","institution_ids":["https://openalex.org/I126231945"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053522042","display_name":"Jacqueline A. James","orcid":null},"institutions":[{"id":"https://openalex.org/I126231945","display_name":"Queen's University Belfast","ror":"https://ror.org/00hswnk62","country_code":"GB","type":"education","lineage":["https://openalex.org/I126231945"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jacqueline A James","raw_affiliation_strings":["Centre for Cancer Research and Cell Biology (CCRCB), Queen\u2019s University Belfast, Belfast, United Kingdom","Centre for Cancer Research and Cell Biology (CCRCB), Queen's University Belfast, Belfast, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Cancer Research and Cell Biology (CCRCB), Queen\u2019s University Belfast, Belfast, United Kingdom","institution_ids":["https://openalex.org/I126231945"]},{"raw_affiliation_string":"Centre for Cancer Research and Cell Biology (CCRCB), Queen's University Belfast, Belfast, United Kingdom","institution_ids":["https://openalex.org/I126231945"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045420024","display_name":"Manuel Salto\u2010Tellez","orcid":"https://orcid.org/0000-0001-8586-282X"},"institutions":[{"id":"https://openalex.org/I126231945","display_name":"Queen's University Belfast","ror":"https://ror.org/00hswnk62","country_code":"GB","type":"education","lineage":["https://openalex.org/I126231945"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Manuel Salto-Tellez","raw_affiliation_strings":["Centre for Cancer Research and Cell Biology (CCRCB), Queen\u2019s University Belfast, Belfast, United Kingdom","Centre for Cancer Research and Cell Biology (CCRCB), Queen's University Belfast, Belfast, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Cancer Research and Cell Biology (CCRCB), Queen\u2019s University Belfast, Belfast, United Kingdom","institution_ids":["https://openalex.org/I126231945"]},{"raw_affiliation_string":"Centre for Cancer Research and Cell Biology (CCRCB), Queen's University Belfast, Belfast, United Kingdom","institution_ids":["https://openalex.org/I126231945"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103413599","display_name":"Peter W. Hamilton","orcid":null},"institutions":[{"id":"https://openalex.org/I126231945","display_name":"Queen's University Belfast","ror":"https://ror.org/00hswnk62","country_code":"GB","type":"education","lineage":["https://openalex.org/I126231945"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Peter W Hamilton","raw_affiliation_strings":["Centre for Cancer Research and Cell Biology (CCRCB), Queen\u2019s University Belfast, Belfast, United Kingdom","Centre for Cancer Research and Cell Biology (CCRCB), Queen's University Belfast, Belfast, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Cancer Research and Cell Biology (CCRCB), Queen\u2019s University Belfast, Belfast, United Kingdom","institution_ids":["https://openalex.org/I126231945"]},{"raw_affiliation_string":"Centre for Cancer Research and Cell Biology (CCRCB), Queen's University Belfast, Belfast, United Kingdom","institution_ids":["https://openalex.org/I126231945"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5039482198","display_name":"Darragh G. McArt","orcid":"https://orcid.org/0000-0001-6426-8776"},"institutions":[{"id":"https://openalex.org/I126231945","display_name":"Queen's University Belfast","ror":"https://ror.org/00hswnk62","country_code":"GB","type":"education","lineage":["https://openalex.org/I126231945"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Darragh G McArt","raw_affiliation_strings":["Centre for Cancer Research and Cell Biology (CCRCB), Queen\u2019s University Belfast, Belfast, United Kingdom","Centre for Cancer Research and Cell Biology (CCRCB), Queen's University Belfast, Belfast, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Cancer Research and Cell Biology (CCRCB), Queen\u2019s University Belfast, Belfast, United Kingdom","institution_ids":["https://openalex.org/I126231945"]},{"raw_affiliation_string":"Centre for Cancer Research and Cell Biology (CCRCB), Queen's University Belfast, Belfast, United Kingdom","institution_ids":["https://openalex.org/I126231945"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5039482198"],"corresponding_institution_ids":["https://openalex.org/I126231945"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":2662,"currency":"EUR","value_usd":2870},"fwci":3.755,"has_fulltext":true,"cited_by_count":14,"citation_normalized_percentile":{"value":0.92909208,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"18","issue":"4","first_page":"bbw044","last_page":"bbw044"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6677564382553101},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.6426007151603699},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6120490431785583},{"id":"https://openalex.org/keywords/translational-research","display_name":"Translational research","score":0.5887067317962646},{"id":"https://openalex.org/keywords/biomarker-discovery","display_name":"Biomarker discovery","score":0.5176701545715332},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5108782649040222},{"id":"https://openalex.org/keywords/precision-medicine","display_name":"Precision medicine","score":0.4833902418613434},{"id":"https://openalex.org/keywords/big-data","display_name":"Big data","score":0.4306023120880127},{"id":"https://openalex.org/keywords/personalized-medicine","display_name":"Personalized medicine","score":0.41881299018859863},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.22788706421852112},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.20112833380699158},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.14783942699432373},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.11270871758460999},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.09718918800354004}],"concepts":[{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6677564382553101},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.6426007151603699},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6120490431785583},{"id":"https://openalex.org/C128544194","wikidata":"https://www.wikidata.org/wiki/Q474859","display_name":"Translational research","level":2,"score":0.5887067317962646},{"id":"https://openalex.org/C124535831","wikidata":"https://www.wikidata.org/wiki/Q4915074","display_name":"Biomarker discovery","level":4,"score":0.5176701545715332},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5108782649040222},{"id":"https://openalex.org/C163763905","wikidata":"https://www.wikidata.org/wiki/Q17075943","display_name":"Precision medicine","level":2,"score":0.4833902418613434},{"id":"https://openalex.org/C75684735","wikidata":"https://www.wikidata.org/wiki/Q858810","display_name":"Big data","level":2,"score":0.4306023120880127},{"id":"https://openalex.org/C32220436","wikidata":"https://www.wikidata.org/wiki/Q2072214","display_name":"Personalized medicine","level":2,"score":0.41881299018859863},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.22788706421852112},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.20112833380699158},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.14783942699432373},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.11270871758460999},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.09718918800354004},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/bib/bbw044","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbw044","pdf_url":"https://academic.oup.com/bib/article-pdf/18/4/634/25438283/bbw044.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:27255914","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27255914","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pure.ed.ac.uk:openaire/b9492aa3-32a7-483c-9a2b-d777ebfef8f0","is_oa":true,"landing_page_url":"https://www.research.ed.ac.uk/en/publications/b9492aa3-32a7-483c-9a2b-d777ebfef8f0","pdf_url":null,"source":{"id":"https://openalex.org/S4406922455","display_name":"Edinburgh Research Explorer","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Li, G, Bankhead, P, Dunne, P D, O'Reilly, P G, James, J A, Salto-Tellez, M, Hamilton, P W & McArt, D G 2017, 'Embracing an integromic approach to tissue biomarker research in cancer: Perspectives and lessons learned.', Briefings in bioinformatics, vol. 18, no. 4, pp. 634-646. https://doi.org/10.1093/bib/bbw044","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pure.qub.ac.uk/portal:publications/d339aae3-3dda-4ba9-a27e-d7e3688344ec","is_oa":true,"landing_page_url":"https://pure.qub.ac.uk/en/publications/d339aae3-3dda-4ba9-a27e-d7e3688344ec","pdf_url":null,"source":{"id":"https://openalex.org/S4306402319","display_name":"Research Portal (Queen's University Belfast)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I126231945","host_organization_name":"Queen's University Belfast","host_organization_lineage":["https://openalex.org/I126231945"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Li, G, Bankhead, P, Dunne, P D, O'Reilly, P G, James, J A, Salto-Tellez, M, Hamilton, P & McArt, D G 2016, 'Embracing an integromic approach to tissue biomarker research in cancer: Perspectives and lessons learned', Briefings in Bioinformatics. https://doi.org/10.1093/bib/bbw044","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:europepmc.org:5030525","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5862317","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pure.ed.ac.uk:publications/b9492aa3-32a7-483c-9a2b-d777ebfef8f0","is_oa":true,"landing_page_url":"http://hdl.handle.net/20.500.11820/b9492aa3-32a7-483c-9a2b-d777ebfef8f0","pdf_url":null,"source":{"id":"https://openalex.org/S4406922455","display_name":"Edinburgh Research Explorer","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""}],"best_oa_location":{"id":"doi:10.1093/bib/bbw044","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbw044","pdf_url":"https://academic.oup.com/bib/article-pdf/18/4/634/25438283/bbw044.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.6299999952316284,"display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G1099494159","display_name":null,"funder_award_id":"FP7/2007-2013","funder_id":"https://openalex.org/F4320319985","funder_display_name":"Cancer Research UK"},{"id":"https://openalex.org/G2250657697","display_name":null,"funder_award_id":"RDO0712612","funder_id":"https://openalex.org/F4320314204","funder_display_name":"Invest Northern Ireland"},{"id":"https://openalex.org/G2914773724","display_name":null,"funder_award_id":"SPI/5151/15","funder_id":"https://openalex.org/F4320320853","funder_display_name":"Public Health Agency"},{"id":"https://openalex.org/G3408424883","display_name":null,"funder_award_id":"C11512","funder_id":"https://openalex.org/F4320319985","funder_display_name":"Cancer Research UK"},{"id":"https://openalex.org/G3829048491","display_name":null,"funder_award_id":"FP7/2007-2013","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G3856523795","display_name":null,"funder_award_id":"FP7/2007-2013/","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G4296452284","display_name":null,"funder_award_id":"A20256","funder_id":"https://openalex.org/F4320319985","funder_display_name":"Cancer Research UK"},{"id":"https://openalex.org/G4492237795","display_name":null,"funder_award_id":"C11512/A20256","funder_id":"https://openalex.org/F4320319985","funder_display_name":"Cancer Research UK"},{"id":"https://openalex.org/G5593277320","display_name":null,"funder_award_id":"2007-2013","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G5702163051","display_name":null,"funder_award_id":"FP7/2007","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G7098502441","display_name":null,"funder_award_id":"/A20256","funder_id":"https://openalex.org/F4320319985","funder_display_name":"Cancer Research UK"},{"id":"https://openalex.org/G8575284855","display_name":"Fast-Tracking Pathology via Automated Image Analysis and High-Performance Computing: Application to Prostate Cancer Diagnostics","funder_award_id":"285910","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320314204","display_name":"Invest Northern Ireland","ror":"https://ror.org/00qnrsq87"},{"id":"https://openalex.org/F4320315985","display_name":"Friends of the Cancer Centre","ror":null},{"id":"https://openalex.org/F4320319985","display_name":"Cancer Research UK","ror":"https://ror.org/054225q67"},{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320320853","display_name":"Public Health Agency","ror":"https://ror.org/03ek62e72"},{"id":"https://openalex.org/F4320335543","display_name":"Health and Social Care Research and Development Division","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2415131672.pdf","grobid_xml":"https://content.openalex.org/works/W2415131672.grobid-xml"},"referenced_works_count":86,"referenced_works":["https://openalex.org/W879764102","https://openalex.org/W1520768026","https://openalex.org/W1606613710","https://openalex.org/W1761151839","https://openalex.org/W1786726265","https://openalex.org/W1787381913","https://openalex.org/W1802551232","https://openalex.org/W1859257957","https://openalex.org/W1912234690","https://openalex.org/W1934094702","https://openalex.org/W1964904043","https://openalex.org/W1974195684","https://openalex.org/W1974694769","https://openalex.org/W1974976299","https://openalex.org/W1977653087","https://openalex.org/W1982210717","https://openalex.org/W1984783889","https://openalex.org/W1984804569","https://openalex.org/W1985994097","https://openalex.org/W1987964288","https://openalex.org/W1988794154","https://openalex.org/W1994709518","https://openalex.org/W2002882918","https://openalex.org/W2005393216","https://openalex.org/W2006941815","https://openalex.org/W2007246900","https://openalex.org/W2007939648","https://openalex.org/W2015292449","https://openalex.org/W2016758618","https://openalex.org/W2022316530","https://openalex.org/W2025183726","https://openalex.org/W2026836010","https://openalex.org/W2031502025","https://openalex.org/W2037947871","https://openalex.org/W2045687954","https://openalex.org/W2045778975","https://openalex.org/W2051815061","https://openalex.org/W2053498449","https://openalex.org/W2060427373","https://openalex.org/W2062094438","https://openalex.org/W2065443004","https://openalex.org/W2074210909","https://openalex.org/W2076617429","https://openalex.org/W2080752395","https://openalex.org/W2081680549","https://openalex.org/W2087133653","https://openalex.org/W2093274439","https://openalex.org/W2096192437","https://openalex.org/W2096716534","https://openalex.org/W2099540110","https://openalex.org/W2099846538","https://openalex.org/W2100619498","https://openalex.org/W2104549677","https://openalex.org/W2114843025","https://openalex.org/W2116420111","https://openalex.org/W2118151336","https://openalex.org/W2118258530","https://openalex.org/W2118302629","https://openalex.org/W2119927557","https://openalex.org/W2120358246","https://openalex.org/W2120500419","https://openalex.org/W2120789186","https://openalex.org/W2121906867","https://openalex.org/W2125764897","https://openalex.org/W2129803003","https://openalex.org/W2130854041","https://openalex.org/W2136482257","https://openalex.org/W2137990512","https://openalex.org/W2149441684","https://openalex.org/W2154224094","https://openalex.org/W2155592392","https://openalex.org/W2157164548","https://openalex.org/W2160041854","https://openalex.org/W2161645441","https://openalex.org/W2163887589","https://openalex.org/W2164826904","https://openalex.org/W2165015714","https://openalex.org/W2167279371","https://openalex.org/W2168552795","https://openalex.org/W2172024792","https://openalex.org/W2216228420","https://openalex.org/W2234666690","https://openalex.org/W2305351156","https://openalex.org/W2582743722","https://openalex.org/W3204546608","https://openalex.org/W4231539689"],"related_works":["https://openalex.org/W3082935376","https://openalex.org/W4386960999","https://openalex.org/W2899657781","https://openalex.org/W4322484660","https://openalex.org/W3193951088","https://openalex.org/W4388011470","https://openalex.org/W4230423494","https://openalex.org/W4298001029","https://openalex.org/W4393252403","https://openalex.org/W4383105306"],"abstract_inverted_index":{"Modern":[0],"approaches":[1,163],"to":[2,110,217],"biomedical":[3],"research":[4,44,100,171],"and":[5,21,32,47,63,114,127,140,156,172,220,229],"diagnostics":[6],"targeted":[7],"towards":[8],"precision":[9],"medicine":[10],"are":[11],"generating":[12],"'big":[13],"data'":[14],"across":[15],"a":[16,84,91,122,137,184,190,207],"range":[17],"of":[18,26,37,55,78,106,125,152,170,186,202,225],"high-throughput":[19],"experimental":[20],"analytical":[22],"platforms.":[23],"Integrative":[24],"analysis":[25],"this":[27,71],"rich":[28],"clinical,":[29],"pathological,":[30],"molecular":[31],"imaging":[33],"data":[34,61],"represents":[35],"one":[36],"the":[38,53,75,99,104,144,150,175,218,223],"greatest":[39],"bottlenecks":[40],"in":[41,45,68],"biomarker":[42,112,226],"discovery":[43,113],"cancer":[46],"other":[48,168],"diseases.":[49],"Following":[50],"on":[51],"from":[52,83],"publication":[54],"our":[56,107,132,153],"successful":[57],"framework":[58,82,205],"for":[59,193],"multimodal":[60,96],"amalgamation":[62],"integrative":[64],"analysis,":[65],"Pathology":[66],"Integromics":[67],"Cancer":[69],"(PICan),":[70],"article":[72],"will":[73,130],"explore":[74],"essential":[76],"elements":[77],"assembling":[79],"an":[80,203,215],"integromics":[81,180,204],"more":[85],"detailed":[86],"perspective.":[87],"PICan,":[88],"built":[89,213],"around":[90],"relational":[92],"database":[93],"storing":[94],"curated":[95],"data,":[97],"is":[98,181,206,212],"tool":[101],"sitting":[102],"at":[103],"heart":[105],"interdisciplinary":[108],"efforts":[109],"streamline":[111],"validation.":[115],"While":[116],"recognizing":[117],"that":[118,164,179,211],"every":[119],"institution":[120],"has":[121],"unique":[123],"set":[124,185],"priorities":[126],"challenges,":[128],"we":[129,147,177],"use":[131],"experiences":[133],"with":[134,214],"PICan":[135],"as":[136],"case":[138],"study":[139],"starting":[141],"point,":[142],"rationalizing":[143],"design":[145],"choices":[146],"made":[148],"within":[149],"context":[151],"local":[154],"infrastructure":[155],"specific":[157],"needs,":[158],"but":[159,188],"also":[160],"highlighting":[161],"alternative":[162],"may":[165],"better":[166],"suit":[167],"programmes":[169],"discovery.":[173],"Along":[174],"way,":[176],"stress":[178],"not":[182],"just":[183],"tools,":[187],"rather":[189],"cohesive":[191],"paradigm":[192],"how":[194],"modern":[195],"bioinformatics":[196],"can":[197],"be":[198],"enhanced.":[199],"Successful":[200],"implementation":[201],"collaborative":[208],"team":[209],"effort":[210],"eye":[216],"future":[219],"greatly":[221],"accelerates":[222],"processes":[224],"discovery,":[227],"validation":[228],"translation":[230],"into":[231],"clinical":[232],"practice.":[233]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":1}],"updated_date":"2026-07-02T09:51:11.867554","created_date":"2025-10-10T00:00:00"}
