{"id":"https://openalex.org/W2344432445","doi":"https://doi.org/10.1093/bib/bbw030","title":"Literature-based discovery of new candidates for drug repurposing","display_name":"Literature-based discovery of new candidates for drug repurposing","publication_year":2016,"publication_date":"2016-04-25","ids":{"openalex":"https://openalex.org/W2344432445","doi":"https://doi.org/10.1093/bib/bbw030","mag":"2344432445","pmid":"https://pubmed.ncbi.nlm.nih.gov/27113728"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbw030","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbw030","pdf_url":"https://academic.oup.com/bib/article-pdf/18/3/488/25408835/bbw030.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bib/article-pdf/18/3/488/25408835/bbw030.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5053912961","display_name":"Hsih\u2010Te Yang","orcid":"https://orcid.org/0000-0002-4851-1374"},"institutions":[{"id":"https://openalex.org/I91807558","display_name":"National Cheng Kung University","ror":"https://ror.org/01b8kcc49","country_code":"TW","type":"education","lineage":["https://openalex.org/I91807558"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Hsih-Te Yang","raw_affiliation_strings":["Institute of Medical Informatics, Department of Computer Science and Information Engineering, National Cheng Kung University, Tainan, Taiwan","Institute of Oral Medicine, National Cheng Kung University College of Medicine, Tainan, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Medical Informatics, Department of Computer Science and Information Engineering, National Cheng Kung University, Tainan, Taiwan","institution_ids":["https://openalex.org/I91807558"]},{"raw_affiliation_string":"Institute of Oral Medicine, National Cheng Kung University College of Medicine, Tainan, Taiwan","institution_ids":["https://openalex.org/I91807558"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074860832","display_name":"Jiun-Huang Ju","orcid":null},"institutions":[{"id":"https://openalex.org/I91807558","display_name":"National Cheng Kung University","ror":"https://ror.org/01b8kcc49","country_code":"TW","type":"education","lineage":["https://openalex.org/I91807558"]}],"countries":["TW"],"is_corresponding":true,"raw_author_name":"Jiun-Huang Ju","raw_affiliation_strings":["Institute of Medical Informatics, Department of Computer Science and Information Engineering, National Cheng Kung University, Tainan, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Medical Informatics, Department of Computer Science and Information Engineering, National Cheng Kung University, Tainan, Taiwan","institution_ids":["https://openalex.org/I91807558"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009760156","display_name":"Yue-Ting Wong","orcid":null},"institutions":[{"id":"https://openalex.org/I91807558","display_name":"National Cheng Kung University","ror":"https://ror.org/01b8kcc49","country_code":"TW","type":"education","lineage":["https://openalex.org/I91807558"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Yue-Ting Wong","raw_affiliation_strings":["Institute of Medical Informatics, Department of Computer Science and Information Engineering, National Cheng Kung University, Tainan, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Medical Informatics, Department of Computer Science and Information Engineering, National Cheng Kung University, Tainan, Taiwan","institution_ids":["https://openalex.org/I91807558"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061460061","display_name":"Ilya Shmulevich","orcid":"https://orcid.org/0000-0002-4410-8780"},"institutions":[{"id":"https://openalex.org/I3148997608","display_name":"Institute for Systems Biology","ror":"https://ror.org/02tpgw303","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I3148997608"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ilya Shmulevich","raw_affiliation_strings":["Institute for Systems Biology, Seattle, WA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Systems Biology, Seattle, WA, USA","institution_ids":["https://openalex.org/I3148997608"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5062802526","display_name":"Jung-Hsien Chiang","orcid":"https://orcid.org/0000-0002-4657-6705"},"institutions":[{"id":"https://openalex.org/I91807558","display_name":"National Cheng Kung University","ror":"https://ror.org/01b8kcc49","country_code":"TW","type":"education","lineage":["https://openalex.org/I91807558"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Jung-Hsien Chiang","raw_affiliation_strings":["Institute of Medical Informatics, Department of Computer Science and Information Engineering, National Cheng Kung University, Tainan, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Medical Informatics, Department of Computer Science and Information Engineering, National Cheng Kung University, Tainan, Taiwan","institution_ids":["https://openalex.org/I91807558"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5074860832"],"corresponding_institution_ids":["https://openalex.org/I91807558"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":5.9801,"has_fulltext":true,"cited_by_count":90,"citation_normalized_percentile":{"value":0.96683053,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"18","issue":"3","first_page":"bbw030","last_page":"bbw030"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9682000279426575,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9639000296592712,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/drug-repositioning","display_name":"Drug repositioning","score":0.8870495557785034},{"id":"https://openalex.org/keywords/repurposing","display_name":"Repurposing","score":0.8532117605209351},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.7700505256652832},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6428422331809998},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.4487881362438202},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3389891982078552},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.32075023651123047},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.1531001627445221},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.15308815240859985},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.14832276105880737},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09231778979301453}],"concepts":[{"id":"https://openalex.org/C103637391","wikidata":"https://www.wikidata.org/wiki/Q5308921","display_name":"Drug repositioning","level":3,"score":0.8870495557785034},{"id":"https://openalex.org/C519536355","wikidata":"https://www.wikidata.org/wiki/Q21021151","display_name":"Repurposing","level":2,"score":0.8532117605209351},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.7700505256652832},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6428422331809998},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.4487881362438202},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3389891982078552},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.32075023651123047},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.1531001627445221},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.15308815240859985},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.14832276105880737},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09231778979301453},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbw030","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbw030","pdf_url":"https://academic.oup.com/bib/article-pdf/18/3/488/25408835/bbw030.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:27113728","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27113728","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bib/bbw030","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbw030","pdf_url":"https://academic.oup.com/bib/article-pdf/18/3/488/25408835/bbw030.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.44999998807907104,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G3505022365","display_name":null,"funder_award_id":"MOST 104","funder_id":"https://openalex.org/F4320322795","funder_display_name":"Ministry of Science and Technology, Taiwan"},{"id":"https://openalex.org/G5998887951","display_name":null,"funder_award_id":"MOST103-","funder_id":"https://openalex.org/F4320322795","funder_display_name":"Ministry of Science and Technology, Taiwan"},{"id":"https://openalex.org/G6037557299","display_name":null,"funder_award_id":"MOST103","funder_id":"https://openalex.org/F4320322795","funder_display_name":"Ministry of Science and Technology, Taiwan"},{"id":"https://openalex.org/G6282059440","display_name":null,"funder_award_id":"003-MY3","funder_id":"https://openalex.org/F4320322795","funder_display_name":"Ministry of Science and Technology, Taiwan"}],"funders":[{"id":"https://openalex.org/F4320322795","display_name":"Ministry of Science and Technology, Taiwan","ror":"https://ror.org/02kv4zf79"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2344432445.pdf","grobid_xml":"https://content.openalex.org/works/W2344432445.grobid-xml"},"referenced_works_count":48,"referenced_works":["https://openalex.org/W22857079","https://openalex.org/W1834923160","https://openalex.org/W1884361584","https://openalex.org/W1975254645","https://openalex.org/W1983248350","https://openalex.org/W1987412121","https://openalex.org/W1991919884","https://openalex.org/W1992382782","https://openalex.org/W1998767819","https://openalex.org/W2006452977","https://openalex.org/W2011726136","https://openalex.org/W2029342376","https://openalex.org/W2030531674","https://openalex.org/W2032566933","https://openalex.org/W2033459915","https://openalex.org/W2039094071","https://openalex.org/W2060942759","https://openalex.org/W2062941476","https://openalex.org/W2063280109","https://openalex.org/W2067096102","https://openalex.org/W2078204613","https://openalex.org/W2081687231","https://openalex.org/W2092418142","https://openalex.org/W2094791588","https://openalex.org/W2096083178","https://openalex.org/W2099188065","https://openalex.org/W2104070133","https://openalex.org/W2107252423","https://openalex.org/W2109487646","https://openalex.org/W2111213181","https://openalex.org/W2112946624","https://openalex.org/W2114781353","https://openalex.org/W2120814856","https://openalex.org/W2123564229","https://openalex.org/W2124001239","https://openalex.org/W2124475347","https://openalex.org/W2127080518","https://openalex.org/W2132186707","https://openalex.org/W2138627627","https://openalex.org/W2142016317","https://openalex.org/W2145310422","https://openalex.org/W2149296602","https://openalex.org/W2162376033","https://openalex.org/W2166209362","https://openalex.org/W2166920386","https://openalex.org/W2413655681","https://openalex.org/W2911367289","https://openalex.org/W6671073431"],"related_works":["https://openalex.org/W2899096130","https://openalex.org/W3190782215","https://openalex.org/W2902729297","https://openalex.org/W3110500039","https://openalex.org/W4255531208","https://openalex.org/W4206422705","https://openalex.org/W4320009247","https://openalex.org/W3186872001","https://openalex.org/W3174741986","https://openalex.org/W4389861022"],"abstract_inverted_index":{"Drug":[0],"development":[1],"is":[2],"an":[3],"expensive":[4],"and":[5,56,154,161],"time-consuming":[6],"process;":[7],"these":[8],"could":[9,16],"be":[10,17],"reduced":[11],"if":[12],"the":[13,61,73,90,136,152,155],"existing":[14,102],"resources":[15],"used":[18,67],"to":[19,28,38,53,68,88,101,175],"identify":[20,177],"candidates":[21,139],"for":[22,43,141,159,181],"drug":[23,41,82,97,168],"repurposing.":[24],"This":[25],"study":[26],"sought":[27],"do":[29],"this":[30],"by":[31,146],"text":[32],"mining":[33],"a":[34,48,109,121,148,170],"large-scale":[35],"literature":[36,153],"repository":[37],"curate":[39],"repurposed":[40,167],"lists":[42],"different":[44],"cancers.":[45],"We":[46,133],"devised":[47],"pattern-based":[49],"relationship":[50],"extraction":[51],"method":[52,79,94,119],"extract":[54],"disease-gene":[55],"gene-drug":[57],"direct":[58,64],"relationships":[59,65,71,117],"from":[60],"literature.":[62],"These":[63],"are":[66],"infer":[69],"indirect":[70,91,116],"using":[72],"ABC":[74],"model.":[75],"A":[76],"gene-shared":[77],"ranking":[78,118],"based":[80],"on":[81],"target":[83,98],"similarity":[84,99],"was":[85,173],"then":[86],"proposed":[87],"prioritize":[89],"relationships.":[92],"Our":[93],"of":[95,113,127,138,151,163,166],"assessing":[96],"correlated":[100],"anatomical":[103],"therapeutic":[104],"chemical":[105],"code-based":[106],"methods":[107],"with":[108],"Pearson":[110],"correlation":[111],"coefficient":[112],"0.9311.":[114],"The":[115],"achieved":[120],"significant":[122],"mean":[123],"average":[124],"precision":[125],"score":[126],"top":[128],"100":[129],"most":[130],"common":[131],"diseases.":[132],"also":[134],"confirmed":[135],"suitability":[137],"identified":[140],"repurposing":[142],"as":[143],"anticancer":[144],"drugs":[145],"conducting":[147],"manual":[149],"review":[150],"clinical":[156],"trials.":[157],"Eventually,":[158],"visualization":[160],"enrichment":[162],"huge":[164],"amount":[165],"information,":[169],"chord":[171],"diagram":[172],"demonstrated":[174],"rapidly":[176],"two":[178],"novel":[179],"indications":[180],"further":[182],"biological":[183],"evaluations.":[184]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":14},{"year":2020,"cited_by_count":14},{"year":2019,"cited_by_count":22},{"year":2018,"cited_by_count":9},{"year":2017,"cited_by_count":4}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
