{"id":"https://openalex.org/W2322763599","doi":"https://doi.org/10.1093/bib/bbw005","title":"An analysis of human microbe\u2013disease associations","display_name":"An analysis of human microbe\u2013disease associations","publication_year":2016,"publication_date":"2016-02-15","ids":{"openalex":"https://openalex.org/W2322763599","doi":"https://doi.org/10.1093/bib/bbw005","mag":"2322763599","pmid":"https://pubmed.ncbi.nlm.nih.gov/26883326"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbw005","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbw005","pdf_url":"https://academic.oup.com/bib/article-pdf/18/1/85/25408549/bbw005.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/18/1/85/25408549/bbw005.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5023355465","display_name":"Wei Ma","orcid":"https://orcid.org/0000-0003-1044-5612"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Wei Ma","raw_affiliation_strings":["Department of Biomedical Informatics, School of Basic Medical Sciences, Peking University, 38 Xueyuan Rd, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, School of Basic Medical Sciences, Peking University, 38 Xueyuan Rd, Beijing, China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100388566","display_name":"Lu Zhang","orcid":"https://orcid.org/0000-0001-7141-6730"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lu Zhang","raw_affiliation_strings":["Department of Physiology and Pathophysiology, School of Basic Medical Sciences, Peking University, 38 Xueyuan Rd, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Physiology and Pathophysiology, School of Basic Medical Sciences, Peking University, 38 Xueyuan Rd, Beijing, China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100406365","display_name":"Pan Zeng","orcid":"https://orcid.org/0000-0003-4632-6279"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Pan Zeng","raw_affiliation_strings":["Department of Biomedical Informatics, School of Basic Medical Sciences, Peking University, 38 Xueyuan Rd, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, School of Basic Medical Sciences, Peking University, 38 Xueyuan Rd, Beijing, China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102857976","display_name":"Chuanbo Huang","orcid":"https://orcid.org/0000-0002-6448-7546"},"institutions":[{"id":"https://openalex.org/I119045251","display_name":"Huaqiao University","ror":"https://ror.org/03frdh605","country_code":"CN","type":"education","lineage":["https://openalex.org/I119045251"]},{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chuanbo Huang","raw_affiliation_strings":["Department of Biomedical Informatics, School of Basic Medical Sciences, Peking University, 38 Xueyuan Rd, Beijing, China","Department of Mathematics, Huaqiao University, Xiamen, Fujian Province, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, School of Basic Medical Sciences, Peking University, 38 Xueyuan Rd, Beijing, China","institution_ids":["https://openalex.org/I20231570"]},{"raw_affiliation_string":"Department of Mathematics, Huaqiao University, Xiamen, Fujian Province, China","institution_ids":["https://openalex.org/I119045251"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100410894","display_name":"Jianwei Li","orcid":"https://orcid.org/0000-0002-9795-2635"},"institutions":[{"id":"https://openalex.org/I184843921","display_name":"Hebei University of Technology","ror":"https://ror.org/018hded08","country_code":"CN","type":"education","lineage":["https://openalex.org/I184843921"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jianwei Li","raw_affiliation_strings":["School of Computer Science, Hebei University of Technology, 5340 Xiping Rd, Tianjin, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, Hebei University of Technology, 5340 Xiping Rd, Tianjin, China","institution_ids":["https://openalex.org/I184843921"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031598662","display_name":"Bin Geng","orcid":"https://orcid.org/0000-0002-1505-3645"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bin Geng","raw_affiliation_strings":["Department of Physiology and Pathophysiology, School of Basic Medical Sciences, Peking University, 38 Xueyuan Rd, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Physiology and Pathophysiology, School of Basic Medical Sciences, Peking University, 38 Xueyuan Rd, Beijing, China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005296486","display_name":"Jichun Yang","orcid":"https://orcid.org/0000-0001-8150-2923"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jichun Yang","raw_affiliation_strings":["Department of Physiology and Pathophysiology, School of Basic Medical Sciences, Peking University, 38 Xueyuan Rd, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Physiology and Pathophysiology, School of Basic Medical Sciences, Peking University, 38 Xueyuan Rd, Beijing, China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001837630","display_name":"Wei Kong","orcid":"https://orcid.org/0000-0002-6554-4338"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wei Kong","raw_affiliation_strings":["Department of Physiology and Pathophysiology, School of Basic Medical Sciences, Peking University, 38 Xueyuan Rd, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Physiology and Pathophysiology, School of Basic Medical Sciences, Peking University, 38 Xueyuan Rd, Beijing, China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052838340","display_name":"Xuezhong Zhou","orcid":"https://orcid.org/0000-0002-4713-3594"},"institutions":[{"id":"https://openalex.org/I21193070","display_name":"Beijing Jiaotong University","ror":"https://ror.org/01yj56c84","country_code":"CN","type":"education","lineage":["https://openalex.org/I21193070"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xuezhong Zhou","raw_affiliation_strings":["School of Computer and Information Technology, Beijing Jiaotong University, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer and Information Technology, Beijing Jiaotong University, Beijing, China","institution_ids":["https://openalex.org/I21193070"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5027886490","display_name":"Qinghua Cui","orcid":"https://orcid.org/0000-0003-3018-5221"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Qinghua Cui","raw_affiliation_strings":["Department of Biomedical Informatics, School of Basic Medical Sciences, Peking University, 38 Xueyuan Rd, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, School of Basic Medical Sciences, Peking University, 38 Xueyuan Rd, Beijing, China","institution_ids":["https://openalex.org/I20231570"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5023355465","https://openalex.org/A5027886490"],"corresponding_institution_ids":["https://openalex.org/I20231570"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":9.5759,"has_fulltext":false,"cited_by_count":244,"citation_normalized_percentile":{"value":0.98416787,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"18","issue":"1","first_page":"85","last_page":"97"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9954000115394592,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.8443951606750488},{"id":"https://openalex.org/keywords/mechanism","display_name":"Mechanism (biology)","score":0.5868715643882751},{"id":"https://openalex.org/keywords/human-disease","display_name":"Human disease","score":0.5633805394172668},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.534473717212677},{"id":"https://openalex.org/keywords/construct","display_name":"Construct (python library)","score":0.5260419845581055},{"id":"https://openalex.org/keywords/complex-disease","display_name":"Complex disease","score":0.46289458870887756},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.41586458683013916},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.4116729497909546},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.34804007411003113},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3298951983451843},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3141722083091736},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.28189030289649963},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.08669686317443848}],"concepts":[{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.8443951606750488},{"id":"https://openalex.org/C89611455","wikidata":"https://www.wikidata.org/wiki/Q6804646","display_name":"Mechanism (biology)","level":2,"score":0.5868715643882751},{"id":"https://openalex.org/C2988867146","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Human disease","level":3,"score":0.5633805394172668},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.534473717212677},{"id":"https://openalex.org/C2780801425","wikidata":"https://www.wikidata.org/wiki/Q5164392","display_name":"Construct (python library)","level":2,"score":0.5260419845581055},{"id":"https://openalex.org/C3018605307","wikidata":"https://www.wikidata.org/wiki/Q200779","display_name":"Complex disease","level":3,"score":0.46289458870887756},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.41586458683013916},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.4116729497909546},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.34804007411003113},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3298951983451843},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3141722083091736},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.28189030289649963},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.08669686317443848},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D001424","descriptor_name":"Bacterial Infections","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001424","descriptor_name":"Bacterial Infections","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001424","descriptor_name":"Bacterial Infections","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbw005","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbw005","pdf_url":"https://academic.oup.com/bib/article-pdf/18/1/85/25408549/bbw005.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26883326","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26883326","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:open-archive.highwire.org:bib:18/1/85","is_oa":false,"landing_page_url":"http://bib.oxfordjournals.org/cgi/content/short/18/1/85","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/bib/bbw005","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbw005","pdf_url":"https://academic.oup.com/bib/article-pdf/18/1/85/25408549/bbw005.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":72,"referenced_works":["https://openalex.org/W22940787","https://openalex.org/W1552961213","https://openalex.org/W1869281583","https://openalex.org/W1968105193","https://openalex.org/W1971415551","https://openalex.org/W1980674790","https://openalex.org/W1981846582","https://openalex.org/W1983248350","https://openalex.org/W1985167300","https://openalex.org/W1991521547","https://openalex.org/W2003765312","https://openalex.org/W2008054523","https://openalex.org/W2009170813","https://openalex.org/W2012606594","https://openalex.org/W2016853666","https://openalex.org/W2018505426","https://openalex.org/W2023280581","https://openalex.org/W2029649819","https://openalex.org/W2033239478","https://openalex.org/W2033262407","https://openalex.org/W2033327108","https://openalex.org/W2038512766","https://openalex.org/W2041073071","https://openalex.org/W2042933379","https://openalex.org/W2055677239","https://openalex.org/W2057700969","https://openalex.org/W2058463390","https://openalex.org/W2062073449","https://openalex.org/W2062533841","https://openalex.org/W2067806364","https://openalex.org/W2071841602","https://openalex.org/W2072417345","https://openalex.org/W2078599166","https://openalex.org/W2080598921","https://openalex.org/W2081313422","https://openalex.org/W2083045667","https://openalex.org/W2089423792","https://openalex.org/W2091840905","https://openalex.org/W2092619571","https://openalex.org/W2092795535","https://openalex.org/W2094486011","https://openalex.org/W2103599939","https://openalex.org/W2110621364","https://openalex.org/W2112631688","https://openalex.org/W2112874908","https://openalex.org/W2117029190","https://openalex.org/W2121604817","https://openalex.org/W2125784987","https://openalex.org/W2127013413","https://openalex.org/W2128769815","https://openalex.org/W2131415145","https://openalex.org/W2135989088","https://openalex.org/W2139119508","https://openalex.org/W2140452573","https://openalex.org/W2142317639","https://openalex.org/W2145336165","https://openalex.org/W2146388699","https://openalex.org/W2148067809","https://openalex.org/W2149573313","https://openalex.org/W2150561315","https://openalex.org/W2150968312","https://openalex.org/W2153624566","https://openalex.org/W2155157373","https://openalex.org/W2158217645","https://openalex.org/W2158446021","https://openalex.org/W2159287477","https://openalex.org/W2162078360","https://openalex.org/W2166562121","https://openalex.org/W2262330054","https://openalex.org/W3101634756","https://openalex.org/W6600911880","https://openalex.org/W6674030133"],"related_works":["https://openalex.org/W2366107444","https://openalex.org/W4388145910","https://openalex.org/W70543718","https://openalex.org/W2134033114","https://openalex.org/W2044340941","https://openalex.org/W2271855253","https://openalex.org/W2987802490","https://openalex.org/W2322763599","https://openalex.org/W2054461564","https://openalex.org/W4294707127"],"abstract_inverted_index":{"The":[0,108],"microbiota":[1],"living":[2],"in":[3,123],"the":[4,48,90,127],"human":[5,43],"body":[6],"has":[7],"critical":[8],"impacts":[9],"on":[10],"our":[11],"health":[12],"and":[13,46,52,58,84,100,106,112,132,141],"disease,":[14,103],"but":[15],"a":[16,29,41,116],"systems":[17],"understanding":[18],"of":[19,129],"its":[20],"relationships":[21,49],"with":[22,75],"disease":[23,44,53,64,70,79,92,137],"remains":[24],"limited.":[25],"Here,":[26],"we":[27,87],"use":[28],"large-scale":[30],"text":[31],"mining-based":[32],"manually":[33],"curated":[34],"microbe-disease":[35],"association":[36],"data":[37],"set":[38],"to":[39,96],"construct":[40],"microbe-based":[42,63,91],"network":[45],"investigate":[47],"between":[50],"microbes":[51],"genes,":[54,80],"symptoms,":[55,81],"chemical":[56,82],"fragments":[57,83],"drugs.":[59,85,107],"We":[60],"reveal":[61],"that":[62,89],"loops":[65],"are":[66],"significantly":[67],"coherent.":[68],"Microbe-based":[69],"connections":[71,99],"have":[72],"strong":[73],"overlaps":[74],"those":[76],"constructed":[77],"by":[78],"Moreover,":[86],"confirm":[88],"analysis":[93],"is":[94],"able":[95],"predict":[97],"novel":[98],"mechanisms":[101],"for":[102,119,125,136],"microbes,":[104],"genes":[105],"presented":[109],"network,":[110],"methods":[111],"findings":[113],"can":[114],"be":[115],"resource":[117],"helpful":[118],"addressing":[120],"some":[121],"issues":[122],"medicine,":[124],"example,":[126],"discovery":[128],"bench":[130],"knowledge":[131],"bedside":[133],"clinical":[134],"solutions":[135],"mechanism":[138],"understanding,":[139],"diagnosis":[140],"therapy.":[142]},"counts_by_year":[{"year":2026,"cited_by_count":8},{"year":2025,"cited_by_count":40},{"year":2024,"cited_by_count":28},{"year":2023,"cited_by_count":32},{"year":2022,"cited_by_count":26},{"year":2021,"cited_by_count":21},{"year":2020,"cited_by_count":34},{"year":2019,"cited_by_count":23},{"year":2018,"cited_by_count":17},{"year":2017,"cited_by_count":11},{"year":2016,"cited_by_count":4}],"updated_date":"2026-06-09T15:46:55.921056","created_date":"2025-10-10T00:00:00"}
