{"id":"https://openalex.org/W2252979829","doi":"https://doi.org/10.1093/bib/bbw001","title":"Bridging semantics and syntax with graph algorithms\u2014state-of-the-art of extracting biomedical relations","display_name":"Bridging semantics and syntax with graph algorithms\u2014state-of-the-art of extracting biomedical relations","publication_year":2016,"publication_date":"2016-02-05","ids":{"openalex":"https://openalex.org/W2252979829","doi":"https://doi.org/10.1093/bib/bbw001","mag":"2252979829","pmid":"https://pubmed.ncbi.nlm.nih.gov/26851224"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbw001","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbw001","pdf_url":"https://academic.oup.com/bib/article-pdf/18/1/160/25408419/bbw001.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/18/1/160/25408419/bbw001.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100452550","display_name":"Yuan Luo","orcid":"https://orcid.org/0000-0003-0195-7456"},"institutions":[{"id":"https://openalex.org/I111979921","display_name":"Northwestern University","ror":"https://ror.org/000e0be47","country_code":"US","type":"education","lineage":["https://openalex.org/I111979921"]},{"id":"https://openalex.org/I113508548","display_name":"Albany State University","ror":"https://ror.org/01vme4277","country_code":"US","type":"education","lineage":["https://openalex.org/I113508548"]},{"id":"https://openalex.org/I392282","display_name":"University at Albany, State University of New York","ror":"https://ror.org/012zs8222","country_code":"US","type":"education","lineage":["https://openalex.org/I392282"]},{"id":"https://openalex.org/I4210147348","display_name":"Northwestern Medicine","ror":"https://ror.org/04fzwnh64","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210147348"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Yuan Luo","raw_affiliation_strings":["Department of Preventive Medicine, Northwestern University, 11th Floor, Arthur Rubloff Building, 750 N. Lake Shore Drive, Chicago, IL 60611, USA","State University of New York at Albany, Department of Information Studies","Department of Preventive Medicine, Northwestern University, 11th Floor, Arthur Rubloff Building, 750 N. Lake Shore Drive, Chicago, IL, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Preventive Medicine, Northwestern University, 11th Floor, Arthur Rubloff Building, 750 N. Lake Shore Drive, Chicago, IL 60611, USA","institution_ids":["https://openalex.org/I4210147348"]},{"raw_affiliation_string":"State University of New York at Albany, Department of Information Studies","institution_ids":["https://openalex.org/I113508548","https://openalex.org/I392282"]},{"raw_affiliation_string":"Department of Preventive Medicine, Northwestern University, 11th Floor, Arthur Rubloff Building, 750 N. Lake Shore Drive, Chicago, IL, USA","institution_ids":["https://openalex.org/I111979921"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070926324","display_name":"\u00d6zlem Uzuner","orcid":"https://orcid.org/0000-0001-8011-9850"},"institutions":[{"id":"https://openalex.org/I392282","display_name":"University at Albany, State University of New York","ror":"https://ror.org/012zs8222","country_code":"US","type":"education","lineage":["https://openalex.org/I392282"]},{"id":"https://openalex.org/I4210147348","display_name":"Northwestern Medicine","ror":"https://ror.org/04fzwnh64","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210147348"]},{"id":"https://openalex.org/I63966007","display_name":"Massachusetts Institute of Technology","ror":"https://ror.org/042nb2s44","country_code":"US","type":"education","lineage":["https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"\u00d6zlem Uzuner","raw_affiliation_strings":["Department of Preventive Medicine, Northwestern University, 11th Floor, Arthur Rubloff Building, 750 N. Lake Shore Drive, Chicago, IL 60611, USA","Massachusetts Institute of Technology, Department of Electrical Engineering","Department of Information Studies, State University of New York at Albany, New York, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Preventive Medicine, Northwestern University, 11th Floor, Arthur Rubloff Building, 750 N. Lake Shore Drive, Chicago, IL 60611, USA","institution_ids":["https://openalex.org/I4210147348"]},{"raw_affiliation_string":"Massachusetts Institute of Technology, Department of Electrical Engineering","institution_ids":["https://openalex.org/I63966007"]},{"raw_affiliation_string":"Department of Information Studies, State University of New York at Albany, New York, USA","institution_ids":["https://openalex.org/I392282"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5006650843","display_name":"Peter Szolovits","orcid":"https://orcid.org/0000-0001-8411-6403"},"institutions":[{"id":"https://openalex.org/I4210147348","display_name":"Northwestern Medicine","ror":"https://ror.org/04fzwnh64","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210147348"]},{"id":"https://openalex.org/I63966007","display_name":"Massachusetts Institute of Technology","ror":"https://ror.org/042nb2s44","country_code":"US","type":"education","lineage":["https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Peter Szolovits","raw_affiliation_strings":["Department of Preventive Medicine, Northwestern University, 11th Floor, Arthur Rubloff Building, 750 N. Lake Shore Drive, Chicago, IL 60611, USA","Department of Electrical Engineering and Computer Science, Massachusetts Institute of Technology, Massachusetts, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Preventive Medicine, Northwestern University, 11th Floor, Arthur Rubloff Building, 750 N. Lake Shore Drive, Chicago, IL 60611, USA","institution_ids":["https://openalex.org/I4210147348"]},{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science, Massachusetts Institute of Technology, Massachusetts, USA","institution_ids":["https://openalex.org/I63966007"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5100452550"],"corresponding_institution_ids":["https://openalex.org/I111979921","https://openalex.org/I113508548","https://openalex.org/I392282","https://openalex.org/I4210147348"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":6.7342,"has_fulltext":true,"cited_by_count":85,"citation_normalized_percentile":{"value":0.97327168,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":91,"max":100},"biblio":{"volume":"18","issue":"1","first_page":"160","last_page":"178"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9916999936103821,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7789977192878723},{"id":"https://openalex.org/keywords/bridging","display_name":"Bridging (networking)","score":0.6031582355499268},{"id":"https://openalex.org/keywords/biomedical-text-mining","display_name":"Biomedical text mining","score":0.5768182873725891},{"id":"https://openalex.org/keywords/syntax","display_name":"Syntax","score":0.49086958169937134},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4812009930610657},{"id":"https://openalex.org/keywords/semantics","display_name":"Semantics (computer science)","score":0.48119622468948364},{"id":"https://openalex.org/keywords/controlled-vocabulary","display_name":"Controlled vocabulary","score":0.47393161058425903},{"id":"https://openalex.org/keywords/relationship-extraction","display_name":"Relationship extraction","score":0.46674874424934387},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4167196750640869},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.3692326843738556},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.27869826555252075},{"id":"https://openalex.org/keywords/text-mining","display_name":"Text mining","score":0.11167868971824646},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1020423173904419}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7789977192878723},{"id":"https://openalex.org/C174348530","wikidata":"https://www.wikidata.org/wiki/Q188635","display_name":"Bridging (networking)","level":2,"score":0.6031582355499268},{"id":"https://openalex.org/C165141518","wikidata":"https://www.wikidata.org/wiki/Q4915126","display_name":"Biomedical text mining","level":3,"score":0.5768182873725891},{"id":"https://openalex.org/C60048249","wikidata":"https://www.wikidata.org/wiki/Q37437","display_name":"Syntax","level":2,"score":0.49086958169937134},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4812009930610657},{"id":"https://openalex.org/C184337299","wikidata":"https://www.wikidata.org/wiki/Q1437428","display_name":"Semantics (computer science)","level":2,"score":0.48119622468948364},{"id":"https://openalex.org/C110615152","wikidata":"https://www.wikidata.org/wiki/Q1469824","display_name":"Controlled vocabulary","level":2,"score":0.47393161058425903},{"id":"https://openalex.org/C153604712","wikidata":"https://www.wikidata.org/wiki/Q7310755","display_name":"Relationship extraction","level":3,"score":0.46674874424934387},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4167196750640869},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.3692326843738556},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.27869826555252075},{"id":"https://openalex.org/C71472368","wikidata":"https://www.wikidata.org/wiki/Q676880","display_name":"Text mining","level":2,"score":0.11167868971824646},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1020423173904419},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1093/bib/bbw001","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbw001","pdf_url":"https://academic.oup.com/bib/article-pdf/18/1/160/25408419/bbw001.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26851224","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26851224","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmid:28472242","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28472242","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:dspace.mit.edu:1721.1/122967","is_oa":true,"landing_page_url":"https://hdl.handle.net/1721.1/122967","pdf_url":null,"source":{"id":"https://openalex.org/S4306400425","display_name":"DSpace@MIT (Massachusetts Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I63966007","host_organization_name":"Massachusetts Institute of Technology","host_organization_lineage":["https://openalex.org/I63966007"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-sa","license_id":"https://openalex.org/licenses/cc-by-nc-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"MIT web domain","raw_type":"Article"},{"id":"pmh:oai:open-archive.highwire.org:bib:18/1/160","is_oa":false,"landing_page_url":"http://bib.oxfordjournals.org/cgi/content/short/18/1/160","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pubmedcentral.nih.gov:5221425","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5221425","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:6080366","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6080366","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbw001","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbw001","pdf_url":"https://academic.oup.com/bib/article-pdf/18/1/160/25408419/bbw001.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2053124063","display_name":null,"funder_award_id":"U54LM008748","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5236573442","display_name":null,"funder_award_id":"U54 LM008748","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G8744663245","display_name":null,"funder_award_id":"U54LM008748","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G8940637788","display_name":null,"funder_award_id":"U54 HG007963","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2252979829.pdf","grobid_xml":"https://content.openalex.org/works/W2252979829.grobid-xml"},"referenced_works_count":200,"referenced_works":["https://openalex.org/W13703775","https://openalex.org/W40385435","https://openalex.org/W73274768","https://openalex.org/W122290181","https://openalex.org/W136394213","https://openalex.org/W154351976","https://openalex.org/W165790511","https://openalex.org/W198826634","https://openalex.org/W199610845","https://openalex.org/W202643521","https://openalex.org/W580573057","https://openalex.org/W848063403","https://openalex.org/W1493270114","https://openalex.org/W1508671669","https://openalex.org/W1508977358","https://openalex.org/W1511588645","https://openalex.org/W1516346799","https://openalex.org/W1537288903","https://openalex.org/W1541322638","https://openalex.org/W1553529581","https://openalex.org/W1568793342","https://openalex.org/W1579035156","https://openalex.org/W1580184797","https://openalex.org/W1587871245","https://openalex.org/W1599615952","https://openalex.org/W1604685658","https://openalex.org/W1792818653","https://openalex.org/W1818857488","https://openalex.org/W1850865022","https://openalex.org/W1877373394","https://openalex.org/W1895979660","https://openalex.org/W1919684990","https://openalex.org/W1934889228","https://openalex.org/W1973352244","https://openalex.org/W1974139890","https://openalex.org/W1982725271","https://openalex.org/W1985644065","https://openalex.org/W1987937467","https://openalex.org/W1988790447","https://openalex.org/W1990343723","https://openalex.org/W1996787131","https://openalex.org/W1998767819","https://openalex.org/W2003185534","https://openalex.org/W2004734764","https://openalex.org/W2009313526","https://openalex.org/W2010665003","https://openalex.org/W2019543926","https://openalex.org/W2020278455","https://openalex.org/W2022009488","https://openalex.org/W2022088830","https://openalex.org/W2022279628","https://openalex.org/W2029549566","https://openalex.org/W2032566933","https://openalex.org/W2032762826","https://openalex.org/W2033853342","https://openalex.org/W2038037963","https://openalex.org/W2044420612","https://openalex.org/W2048059249","https://openalex.org/W2050879574","https://openalex.org/W2051547811","https://openalex.org/W2057419867","https://openalex.org/W2064030835","https://openalex.org/W2064271409","https://openalex.org/W2064299012","https://openalex.org/W2068882115","https://openalex.org/W2075655036","https://openalex.org/W2075897300","https://openalex.org/W2077566950","https://openalex.org/W2081580037","https://openalex.org/W2083225388","https://openalex.org/W2085860988","https://openalex.org/W2097498916","https://openalex.org/W2097698606","https://openalex.org/W2097960255","https://openalex.org/W2098201295","https://openalex.org/W2099369363","https://openalex.org/W2100751507","https://openalex.org/W2101727078","https://openalex.org/W2102039273","https://openalex.org/W2102563561","https://openalex.org/W2102742655","https://openalex.org/W2102770365","https://openalex.org/W2103017472","https://openalex.org/W2103851489","https://openalex.org/W2104381725","https://openalex.org/W2105637130","https://openalex.org/W2105924489","https://openalex.org/W2106560678","https://openalex.org/W2107005506","https://openalex.org/W2107530479","https://openalex.org/W2107580398","https://openalex.org/W2107644675","https://openalex.org/W2108010925","https://openalex.org/W2108491719","https://openalex.org/W2110279753","https://openalex.org/W2110302162","https://openalex.org/W2110408238","https://openalex.org/W2112543617","https://openalex.org/W2114847203","https://openalex.org/W2115516470","https://openalex.org/W2116786260","https://openalex.org/W2118349699","https://openalex.org/W2119148238","https://openalex.org/W2122922578","https://openalex.org/W2124225821","https://openalex.org/W2124649441","https://openalex.org/W2124649657","https://openalex.org/W2124772738","https://openalex.org/W2124996938","https://openalex.org/W2125712079","https://openalex.org/W2125726375","https://openalex.org/W2126690563","https://openalex.org/W2127069089","https://openalex.org/W2127080518","https://openalex.org/W2127713198","https://openalex.org/W2127976940","https://openalex.org/W2128245545","https://openalex.org/W2129227538","https://openalex.org/W2129769245","https://openalex.org/W2130479394","https://openalex.org/W2130719722","https://openalex.org/W2132288458","https://openalex.org/W2132972976","https://openalex.org/W2134689819","https://openalex.org/W2134967412","https://openalex.org/W2135118172","https://openalex.org/W2136127280","https://openalex.org/W2136144414","https://openalex.org/W2138627627","https://openalex.org/W2139051211","https://openalex.org/W2139736061","https://openalex.org/W2141305003","https://openalex.org/W2141312052","https://openalex.org/W2141605886","https://openalex.org/W2142572836","https://openalex.org/W2143892076","https://openalex.org/W2143902665","https://openalex.org/W2143954109","https://openalex.org/W2143969914","https://openalex.org/W2144896636","https://openalex.org/W2146974287","https://openalex.org/W2147818576","https://openalex.org/W2147880316","https://openalex.org/W2148488766","https://openalex.org/W2148564836","https://openalex.org/W2150288223","https://openalex.org/W2152698860","https://openalex.org/W2154654747","https://openalex.org/W2154866190","https://openalex.org/W2157549840","https://openalex.org/W2159583324","https://openalex.org/W2159636537","https://openalex.org/W2161062388","https://openalex.org/W2161604082","https://openalex.org/W2162311237","https://openalex.org/W2164105883","https://openalex.org/W2164381580","https://openalex.org/W2165067209","https://openalex.org/W2166111585","https://openalex.org/W2166474856","https://openalex.org/W2168041406","https://openalex.org/W2168905447","https://openalex.org/W2169250641","https://openalex.org/W2169528473","https://openalex.org/W2169818249","https://openalex.org/W2169974160","https://openalex.org/W2170726034","https://openalex.org/W2173188050","https://openalex.org/W2173884055","https://openalex.org/W2177317049","https://openalex.org/W2184865040","https://openalex.org/W2212494754","https://openalex.org/W2250270919","https://openalex.org/W2250369011","https://openalex.org/W2250526219","https://openalex.org/W2251104810","https://openalex.org/W2251279337","https://openalex.org/W2251431888","https://openalex.org/W2251450145","https://openalex.org/W2251756410","https://openalex.org/W2251814321","https://openalex.org/W2251988705","https://openalex.org/W2252226131","https://openalex.org/W2292992304","https://openalex.org/W2604748391","https://openalex.org/W2792388944","https://openalex.org/W2794026841","https://openalex.org/W2801356492","https://openalex.org/W2916355958","https://openalex.org/W3023306850","https://openalex.org/W3089319657","https://openalex.org/W4211054902","https://openalex.org/W4213016248","https://openalex.org/W4213060373","https://openalex.org/W4250877149","https://openalex.org/W4285719527","https://openalex.org/W6608016061","https://openalex.org/W6623644288","https://openalex.org/W6681287948","https://openalex.org/W6686291579"],"related_works":["https://openalex.org/W2064314529","https://openalex.org/W842810586","https://openalex.org/W4319940250","https://openalex.org/W2352298027","https://openalex.org/W2092919065","https://openalex.org/W3138801416","https://openalex.org/W4236762297","https://openalex.org/W2444550338","https://openalex.org/W2169232658","https://openalex.org/W4379379356"],"abstract_inverted_index":{"Research":[0],"on":[1],"extracting":[2],"biomedical":[3,112,134],"relations":[4,42],"has":[5,78],"received":[6],"growing":[7],"attention":[8],"recently,":[9],"with":[10],"numerous":[11],"biological":[12],"and":[13,23,35,53,65,71,84,93,120,126,152,164],"clinical":[14,20,54,66],"applications":[15],"including":[16],"those":[17],"in":[18,38,81,100,159],"pharmacogenomics,":[19],"trial":[21],"screening":[22],"adverse":[24],"drug":[25],"reaction":[26],"detection.":[27],"The":[28],"ability":[29],"to":[30,46,69,116,148],"accurately":[31],"capture":[32],"both":[33,63],"semantic":[34],"syntactic":[36],"structures":[37],"text":[39],"expressing":[40],"these":[41],"becomes":[43],"increasingly":[44],"critical":[45],"enable":[47],"deep":[48],"understanding":[49],"of":[50,106,111,140],"scientific":[51],"papers":[52],"narratives.":[55],"Shared":[56],"task":[57],"challenges":[58,119],"have":[59],"been":[60,79],"organized":[61],"by":[62],"bioinformatics":[64],"informatics":[67],"communities":[68],"assess":[70],"advance":[72],"the":[73,97,109,138,156],"state-of-the-art":[74,158],"research.":[75,128],"Significant":[76],"progress":[77],"made":[80],"algorithm":[82],"development":[83],"resource":[85],"construction.":[86],"In":[87,129],"particular,":[88],"graph-based":[89],"approaches":[90],"bridge":[91],"semantics":[92],"syntax,":[94],"often":[95],"achieving":[96],"best":[98],"performance":[99],"shared":[101,153],"tasks.":[102],"However,":[103],"a":[104,145],"number":[105],"problems":[107],"at":[108],"frontiers":[110],"relation":[113,135],"extraction":[114,136],"continue":[115],"pose":[117],"interesting":[118],"present":[121,144],"opportunities":[122],"for":[123],"great":[124],"improvement":[125],"fruitful":[127],"this":[130],"article,":[131],"we":[132],"place":[133],"against":[137],"backdrop":[139],"its":[141,149],"versatile":[142],"applications,":[143],"gentle":[146],"introduction":[147],"general":[150],"pipeline":[151],"resources,":[154],"review":[155],"current":[157],"methodology":[160],"advancement,":[161],"discuss":[162],"limitations":[163],"point":[165],"out":[166],"several":[167],"promising":[168],"future":[169],"directions.":[170]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":13},{"year":2021,"cited_by_count":8},{"year":2020,"cited_by_count":14},{"year":2019,"cited_by_count":9},{"year":2018,"cited_by_count":17},{"year":2017,"cited_by_count":9},{"year":2016,"cited_by_count":7}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
