{"id":"https://openalex.org/W2070207016","doi":"https://doi.org/10.1093/bib/bbv105","title":"Current Progress in Bioinformatics 2016","display_name":"Current Progress in Bioinformatics 2016","publication_year":2015,"publication_date":"2015-11-30","ids":{"openalex":"https://openalex.org/W2070207016","doi":"https://doi.org/10.1093/bib/bbv105","mag":"2070207016","pmid":"https://pubmed.ncbi.nlm.nih.gov/26628559"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbv105","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbv105","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5084043782","display_name":"Russ B. Altman","orcid":"https://orcid.org/0000-0003-3859-2905"},"institutions":[{"id":"https://openalex.org/I4210137306","display_name":"Stanford Medicine","ror":"https://ror.org/03mtd9a03","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210137306","https://openalex.org/I97018004"]},{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Russ Altman","raw_affiliation_strings":["Stanford","Stanford\u2020"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Stanford","institution_ids":["https://openalex.org/I4210137306"]},{"raw_affiliation_string":"Stanford\u2020","institution_ids":["https://openalex.org/I97018004"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5084043782"],"corresponding_institution_ids":["https://openalex.org/I4210137306","https://openalex.org/I97018004"],"apc_list":{"value":3885,"currency":"USD","value_usd":3885},"apc_paid":null,"fwci":0.4163,"has_fulltext":false,"cited_by_count":19,"citation_normalized_percentile":{"value":0.63251857,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":99},"biblio":{"volume":"17","issue":"1","first_page":"1","last_page":"1"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9866999983787537,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9866999983787537,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5294313430786133},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.39194902777671814},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3748077154159546},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3293336033821106},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2545861005783081}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5294313430786133},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.39194902777671814},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3748077154159546},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3293336033821106},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2545861005783081}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D058685","descriptor_name":"Genetic Pleiotropy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058685","descriptor_name":"Genetic Pleiotropy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058685","descriptor_name":"Genetic Pleiotropy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063045","descriptor_name":"Crowdsourcing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063045","descriptor_name":"Crowdsourcing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063045","descriptor_name":"Crowdsourcing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbv105","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbv105","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26628559","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26628559","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":"Editorial"},{"id":"pmh:oai:open-archive.highwire.org:bib:17/1/1","is_oa":false,"landing_page_url":"http://bib.oxfordjournals.org/cgi/content/short/17/1/1","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2382290278","https://openalex.org/W2350741829","https://openalex.org/W2130043461","https://openalex.org/W2530322880","https://openalex.org/W1596801655"],"abstract_inverted_index":{"In":[0,193],"this":[1,194,460],"issue,":[2],"we":[3],"present":[4,622],"five":[5],"review":[6,207,261,328,455,472,499,562],"articles":[7],"focusing":[8,581],"on":[9,147,222,241,262,330,384,405,527,582],"active":[10],"and":[11,41,58,98,126,150,218,244,312,335,338,351,423,440,450,463,475,493,518,544,585,594,601,620,647,663,672],"emerging":[12,501,661],"areas":[13,19],"of":[14,31,38,51,79,100,109,120,155,159,179,266,269,287,303,318,321,375,379,386,398,434,448,473,485,506,511,539,542,547,550,563,644,650,659],"bioinformatics.":[15,684],"We":[16,653],"identified":[17],"these":[18,341,435,657],"as":[20,284,522],"ones":[21],"in":[22,54,65,74,95,112,152,230,237,282,324,363,366,459,482,495,531,570,577,604,623,638,666],"which":[23],"there":[24,534],"has":[25,278],"recently":[26,589],"been":[27,279,298,590],"a":[28,129,156,180,220,259,270,322,470,537,561,678],"critical":[29],"mass":[30],"initial":[32],"publications":[33],"that":[34,68,88,166,239,252,294,414,632,674],"set":[35,158],"the":[36,39,44,61,80,89,96,110,153,175,196,199,208,223,234,242,319,347,360,373,483,490,504,509,545,564,598,611,669],"direction":[37],"field,":[40],"lay":[42],"out":[43],"key":[45,200],"scientific":[46,391,431,524,680],"challenges":[47,439,643,649,673],"going":[48],"forward.":[49],"Much":[50],"current":[52,226,264,361],"activity":[53,374],"bioinformatics":[55],"is":[56,84,123,163],"informed":[57],"inspired":[59],"by":[60,134],"recent":[62,457,462,500],"increased":[63],"interest":[64,281,362,603],"\u2018precision":[66],"medicine'":[67],"US":[69],"President":[70],"Barack":[71],"Obama":[72],"highlighted":[73],"his":[75],"January":[76],"2015":[77],"State":[78],"Union":[81],"address.":[82],"It":[83],"clear":[85],"to":[86,187,212,333,372,429,592,596,676],"all":[87],"computational":[90,113,205,209,331,540,583],"techniques":[91,210],"will":[92,535],"be":[93,132,183,416,536],"mandatory":[94],"design":[97],"delivery":[99],"precise":[101],"healthcare.":[102],"Li":[103],"et":[104,256,357,467,558],"al.":[105,257,358,468,559],"provide":[106,219,258,402,427,469,560,677],"an":[107,184,285],"overview":[108],"progress":[111],"methods":[114,332,494],"for":[115,137,171,190,204,249,345,353,418,442,478,567,683],"drug":[116,121,130,181,231,250,315,514],"repositioning.":[117],"The":[118,301,393,608],"cost":[119],"development":[122],"very":[124],"high,":[125],"once":[127],"approved":[128,145],"can":[131,305,415],"used":[133,211,417],"healthcare":[135],"providers":[136],"\u2018off":[138],"label'":[139],"indications.":[140],"Although":[141],"most":[142,224],"drugs":[143,214,238],"are":[144,240,253,343],"based":[146,404],"their":[148,406,529],"safety":[149],"efficacy":[151],"context":[154,484],"limited":[157],"disease":[160],"indications,":[161],"it":[162],"also":[164,245],"possible":[165],"they":[167,498,628],"have":[168,297,588],"salutary":[169],"effects":[170],"other":[172,191],"diseases.":[173,192],"Indeed,":[174],"unwanted":[176],"\u2018side":[177],"effects'":[178],"may":[182,295,633],"important":[185,660],"clue":[186],"its":[188],"utility":[189],"review,":[195],"authors":[197,394,609],"summarize":[198,359],"data":[201,403,476,516,572,606,616],"sources":[202],"available":[203],"approaches,":[206],"associate":[213],"with":[215,274],"new":[216,307],"indications":[217],"perspective":[221],"compelling":[225],"use":[227],"cases.":[228],"Success":[229],"repositioning":[232],"leverages":[233],"huge":[235],"investment":[236],"market,":[243],"open":[246],"up":[247],"opportunities":[248,352,441,671],"combinations":[251],"useful.":[254],"Tyler":[255],"useful":[260,344,471],"our":[263,523],"understanding":[265,346],"pleiotropy\u2014the":[267],"association":[268],"single":[271],"genetic":[272,290,349],"locus":[273],"multiple":[275,325],"phenotypes.":[276],"There":[277],"great":[280,599],"pleiotropy":[283],"indicator":[286],"potential":[288],"shared":[289],"architecture":[291,350],"between":[292,614],"phenotypes":[293],"previously":[296],"considered":[299],"unrelated.":[300],"discovery":[302,419],"relations":[304],"suggest":[306,629],"molecular":[308,507],"mechanisms,":[309],"clinical":[310],"correlations":[311],"potentially":[313],"unexpected":[314],"response":[316],"(because":[317],"role":[320],"target":[323],"phenotypes).":[326],"This":[327,454],"focuses":[329],"discover":[334],"characterize":[336],"pleiotropy,":[337],"examines":[339],"how":[340],"characterizations":[342],"underlying":[348],"novel":[354],"discoveries.":[355],"Khare":[356],"using":[364,553],"crowdsourcing":[365],"biomedical":[367,479,571,586,605],"research.":[368,432],"Crowdsourcing":[369],"generally":[370],"refers":[371],"engaging":[376],"large":[377],"numbers":[378],"people":[380],"who":[381,401,425],"make":[382],"efforts":[383],"behalf":[385],"science,":[387],"often":[388],"without":[389],"formal":[390],"credentials.":[392],"define":[395],"two":[396],"groups":[397],"users:":[399],"those":[400,621],"behavior":[407],"(e.g.":[408],"search":[409],"logs,":[410],"Facebook":[411],"posts,":[412],"tweets)":[413],"or":[420,574],"hypothesis":[421],"generation,":[422],"users":[424],"actively":[426],"labor":[428],"support":[430],"Each":[433],"user":[436],"types":[437],"creates":[438],"scientists":[443],"(while":[444],"raising":[445],"interesting":[446],"issues":[447],"authorship":[449],"human":[451],"subjects":[452],"research).":[453],"summarizes":[456],"work":[458],"relatively":[461],"fascinating":[464],"phenomenon.":[465],"Gonzalez":[466],"text":[474,496],"mining":[477],"discovery,":[480],"particularly":[481],"precision":[486],"medicine.":[487],"After":[488],"defining":[489],"basic":[491],"concepts":[492],"mining,":[497],"applications":[502],"including":[503,637],"extraction":[505],"pathways,":[508],"prediction":[510],"gene":[512],"function,":[513],"repositioning,":[515],"integration":[517],"pharmacogenomics.":[519],"As":[520],"long":[521],"colleagues":[525],"insist":[526],"reporting":[528],"results":[530],"natural":[532,554],"language,":[533],"challenge":[538],"analysis":[541],"text,":[543],"creation":[546],"structured":[548],"databases":[549],"information":[551,640],"reported":[552],"language.":[555],"Finally,":[556],"Greene":[557],"competencies":[565],"required":[566],"professionals":[568],"working":[569],"science":[573,617],"\u2018big":[575],"data'":[576,646],"biomedicine.":[578],"Existing":[579],"curricula":[580],"biology":[584],"informatics":[587],"challenged":[591],"expand":[593],"augment":[595,634],"accommodate":[597],"academic":[600],"industrial":[602],"science.":[607],"discuss":[610],"typical":[612],"differences":[613],"modern":[615],"curricular":[618],"needs,":[619],"more":[624],"traditional":[625],"programs.":[626],"Notably,":[627],"additional":[630],"courses":[631],"existing":[635],"curricula,":[636],"\u2018biological":[639],"flow',":[641],"\u2018statistical":[642],"big":[645,651],"\u2018computational":[648],"data'.":[652],"hope":[654],"you":[655],"enjoy":[656],"reviews":[658],"areas,":[662],"join":[664],"us":[665],"marveling":[667],"at":[668],"fantastic":[670],"continue":[675],"rich":[679],"research":[681],"agenda":[682]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":2},{"year":2017,"cited_by_count":3}],"updated_date":"2026-08-26T07:47:46.906454","created_date":"2025-10-10T00:00:00"}
