{"id":"https://openalex.org/W2206833541","doi":"https://doi.org/10.1093/bib/bbv102","title":"Surveying and benchmarking techniques to analyse DNA gel fingerprint images","display_name":"Surveying and benchmarking techniques to analyse DNA gel fingerprint images","publication_year":2015,"publication_date":"2015-12-03","ids":{"openalex":"https://openalex.org/W2206833541","doi":"https://doi.org/10.1093/bib/bbv102","mag":"2206833541","pmid":"https://pubmed.ncbi.nlm.nih.gov/26634918"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbv102","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbv102","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://investigacion.unirioja.es/documentos/5bbc69e6b750603269e8236a","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5008590671","display_name":"J\u00f3nathan Heras","orcid":"https://orcid.org/0000-0003-4775-1306"},"institutions":[{"id":"https://openalex.org/I168974976","display_name":"Universidad de La Rioja","ror":"https://ror.org/0553yr311","country_code":"ES","type":"education","lineage":["https://openalex.org/I168974976"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"J\u00f3nathan Heras","raw_affiliation_strings":["Corresponding author: J\u00f3nathan Heras. Department of Mathematics and Computer Science, Universidad de La Rioja, Ed. Vives, C/ Luis de Ulloa 2, 26004, Logro\u00f1o, La Rioja, Spain. Tel.: +34-941299461","University of La Rioja"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Corresponding author: J\u00f3nathan Heras. Department of Mathematics and Computer Science, Universidad de La Rioja, Ed. Vives, C/ Luis de Ulloa 2, 26004, Logro\u00f1o, La Rioja, Spain. Tel.: +34-941299461","institution_ids":["https://openalex.org/I168974976"]},{"raw_affiliation_string":"University of La Rioja","institution_ids":["https://openalex.org/I168974976"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100602979","display_name":"C\u00e9sar Dom\u00ednguez","orcid":"https://orcid.org/0000-0002-2081-7523"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"C\u00e9sar Dom\u00ednguez","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008080867","display_name":"Eloy Mata","orcid":"https://orcid.org/0000-0003-0538-4579"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Eloy Mata","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5027346365","display_name":"Vico Pascual","orcid":"https://orcid.org/0000-0003-3576-0889"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Vico Pascual","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5008590671"],"corresponding_institution_ids":["https://openalex.org/I168974976"],"apc_list":{"value":3885,"currency":"USD","value_usd":3885},"apc_paid":null,"fwci":0.2775,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.60257503,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"17","issue":"6","first_page":"bbv102","last_page":"bbv102"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7706812620162964},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.7514180541038513},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.708256721496582},{"id":"https://openalex.org/keywords/benchmarking","display_name":"Benchmarking","score":0.701861560344696},{"id":"https://openalex.org/keywords/normalization","display_name":"Normalization (sociology)","score":0.6742517948150635},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.591369092464447},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.5887739062309265},{"id":"https://openalex.org/keywords/fingerprint","display_name":"Fingerprint (computing)","score":0.5212948322296143},{"id":"https://openalex.org/keywords/image-segmentation","display_name":"Image segmentation","score":0.4895056486129761},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.4793999195098877}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7706812620162964},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.7514180541038513},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.708256721496582},{"id":"https://openalex.org/C86251818","wikidata":"https://www.wikidata.org/wiki/Q816754","display_name":"Benchmarking","level":2,"score":0.701861560344696},{"id":"https://openalex.org/C136886441","wikidata":"https://www.wikidata.org/wiki/Q926129","display_name":"Normalization (sociology)","level":2,"score":0.6742517948150635},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.591369092464447},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.5887739062309265},{"id":"https://openalex.org/C2777826928","wikidata":"https://www.wikidata.org/wiki/Q3745713","display_name":"Fingerprint (computing)","level":2,"score":0.5212948322296143},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.4895056486129761},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.4793999195098877},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.0},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0},{"id":"https://openalex.org/C162853370","wikidata":"https://www.wikidata.org/wiki/Q39809","display_name":"Marketing","level":1,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bib/bbv102","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbv102","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26634918","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26634918","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":"Journal Article"},{"id":"pmh:oai:open-archive.highwire.org:bib:17/6/912","is_oa":false,"landing_page_url":"http://bib.oxfordjournals.org/cgi/content/short/17/6/912","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:portal.dialnet.es:doc/5bbc69e6b750603269e8236a","is_oa":true,"landing_page_url":"https://investigacion.unirioja.es/documentos/5bbc69e6b750603269e8236a","pdf_url":null,"source":{"id":"https://openalex.org/S4306402551","display_name":"RIUR (Universidad de La Rioja)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I3032752892","host_organization_name":"Universidad Internacional de La Rioja","host_organization_lineage":["https://openalex.org/I3032752892"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"pmh:oai:portal.dialnet.es:doc/5bbc69e6b750603269e8236a","is_oa":true,"landing_page_url":"https://investigacion.unirioja.es/documentos/5bbc69e6b750603269e8236a","pdf_url":null,"source":{"id":"https://openalex.org/S4306402551","display_name":"RIUR (Universidad de La Rioja)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I3032752892","host_organization_name":"Universidad Internacional de La Rioja","host_organization_lineage":["https://openalex.org/I3032752892"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":108,"referenced_works":["https://openalex.org/W142402178","https://openalex.org/W313936236","https://openalex.org/W611401390","https://openalex.org/W652664929","https://openalex.org/W1186776093","https://openalex.org/W1494484168","https://openalex.org/W1565746575","https://openalex.org/W1576973695","https://openalex.org/W1606810783","https://openalex.org/W1612034467","https://openalex.org/W1902088696","https://openalex.org/W1943237984","https://openalex.org/W1966176240","https://openalex.org/W1968130468","https://openalex.org/W1969595039","https://openalex.org/W1971057981","https://openalex.org/W1973604042","https://openalex.org/W1975810687","https://openalex.org/W1975833758","https://openalex.org/W1987869189","https://openalex.org/W1990734057","https://openalex.org/W1991141438","https://openalex.org/W2004132756","https://openalex.org/W2007228303","https://openalex.org/W2011211217","https://openalex.org/W2016562841","https://openalex.org/W2017146617","https://openalex.org/W2020883978","https://openalex.org/W2030008474","https://openalex.org/W2033419168","https://openalex.org/W2036887984","https://openalex.org/W2041594583","https://openalex.org/W2049736842","https://openalex.org/W2052093305","https://openalex.org/W2070980386","https://openalex.org/W2071122929","https://openalex.org/W2071535426","https://openalex.org/W2082436128","https://openalex.org/W2091505355","https://openalex.org/W2097706568","https://openalex.org/W2099540110","https://openalex.org/W2100265065","https://openalex.org/W2112617323","https://openalex.org/W2114024619","https://openalex.org/W2115130231","https://openalex.org/W2116927907","https://openalex.org/W2117519970","https://openalex.org/W2118587067","https://openalex.org/W2121927366","https://openalex.org/W2123134858","https://openalex.org/W2123525093","https://openalex.org/W2124266758","https://openalex.org/W2130372308","https://openalex.org/W2130431580","https://openalex.org/W2132247880","https://openalex.org/W2139166279","https://openalex.org/W2140144848","https://openalex.org/W2147820229","https://openalex.org/W2149250091","https://openalex.org/W2151115948","https://openalex.org/W2151391948","https://openalex.org/W2153625822","https://openalex.org/W2153699336","https://openalex.org/W2158698691","https://openalex.org/W2160693392","https://openalex.org/W2163270728","https://openalex.org/W2165466912","https://openalex.org/W2181770128","https://openalex.org/W2280414112","https://openalex.org/W2289456170","https://openalex.org/W2307257103","https://openalex.org/W2324042828","https://openalex.org/W2543943172","https://openalex.org/W2585096387","https://openalex.org/W2597073929","https://openalex.org/W2741820360","https://openalex.org/W3138771162","https://openalex.org/W4229964020","https://openalex.org/W4232087855","https://openalex.org/W4233482358","https://openalex.org/W4238705523","https://openalex.org/W4240067376","https://openalex.org/W4255554277","https://openalex.org/W4285719527","https://openalex.org/W4300742598","https://openalex.org/W4382140653","https://openalex.org/W6605827463","https://openalex.org/W6621663541","https://openalex.org/W6633774736","https://openalex.org/W6634586160","https://openalex.org/W6643663331","https://openalex.org/W6644160383","https://openalex.org/W6648328578","https://openalex.org/W6652356385","https://openalex.org/W6655837830","https://openalex.org/W6676506327","https://openalex.org/W6678453011","https://openalex.org/W6678461930","https://openalex.org/W6679507678","https://openalex.org/W6680826062","https://openalex.org/W6682526812","https://openalex.org/W6695149316","https://openalex.org/W6696775444","https://openalex.org/W6698323147","https://openalex.org/W6729104696","https://openalex.org/W6733265764","https://openalex.org/W6734668936","https://openalex.org/W6792221166"],"related_works":["https://openalex.org/W4238897586","https://openalex.org/W435179959","https://openalex.org/W2619091065","https://openalex.org/W2059640416","https://openalex.org/W1490753184","https://openalex.org/W2284465472","https://openalex.org/W2291782699","https://openalex.org/W1993948687","https://openalex.org/W2011676020","https://openalex.org/W2770764537"],"abstract_inverted_index":{"DNA":[0,21,26],"fingerprinting":[1],"is":[2,157],"a":[3,95,99,145],"genetic":[4],"typing":[5],"technique":[6],"that":[7,55,79,97,148,152],"allows":[8],"the":[9,12,18,52,60,77,84,104,112,116,126,153,158],"analysis":[10,24],"of":[11,20,25,32,64,102,118,147],"genomic":[13],"relatedness":[14],"between":[15],"samples,":[16],"and":[17,43,72,111,120,134,137,165],"comparison":[19],"patterns.":[22],"The":[23],"gel":[27],"fingerprint":[28,44],"images":[29,110],"usually":[30,80],"consists":[31],"five":[33],"consecutive":[34],"steps:":[35],"image":[36],"pre-processing,":[37],"lane":[38,132,163],"segmentation,":[39],"band":[40,135,166],"detection,":[41,136],"normalization":[42],"comparison.":[45],"In":[46],"this":[47],"article,":[48],"we":[49,68,93,124,150],"firstly":[50],"survey":[51],"main":[53],"methods":[54],"have":[56],"been":[57],"applied":[58],"in":[59,62],"literature":[61],"each":[63],"these":[65],"stages.":[66],"Secondly,":[67],"focus":[69],"on":[70],"lane-segmentation":[71,119],"band-detection":[73,121],"algorithms-as":[74],"they":[75],"are":[76],"steps":[78],"require":[81],"user-intervention-and":[82],"detect":[83],"seven":[85],"core":[86,127],"algorithms":[87,128],"used":[88,129],"for":[89,131,162],"both":[90,130],"tasks.":[91],"Subsequently,":[92],"present":[94],"benchmark":[96],"includes":[98],"data":[100],"set":[101],"images,":[103],"gold":[105],"standards":[106],"associated":[107],"with":[108],"those":[109],"tools":[113],"to":[114],"measure":[115],"performance":[117,140],"algorithms.":[122],"Finally,":[123],"implement":[125],"segmentation":[133,164],"evaluate":[138],"their":[139],"using":[141],"our":[142],"benchmark.":[143],"As":[144],"conclusion":[146],"study,":[149],"obtain":[151],"average":[154],"profile":[155],"algorithm":[156],"best":[159],"starting":[160],"point":[161],"detection.":[167]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":1}],"updated_date":"2026-08-26T07:47:46.906454","created_date":"2025-10-10T00:00:00"}
