{"id":"https://openalex.org/W2258865027","doi":"https://doi.org/10.1093/bib/bbv099","title":"Multiple sequence alignment modeling: methods and applications","display_name":"Multiple sequence alignment modeling: methods and applications","publication_year":2015,"publication_date":"2015-11-27","ids":{"openalex":"https://openalex.org/W2258865027","doi":"https://doi.org/10.1093/bib/bbv099","mag":"2258865027","pmid":"https://pubmed.ncbi.nlm.nih.gov/26615024"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbv099","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbv099","pdf_url":"https://academic.oup.com/bib/article-pdf/17/6/1009/8280322/bbv099.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/17/6/1009/8280322/bbv099.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5086395779","display_name":"Maria Chatzou","orcid":"https://orcid.org/0000-0003-4012-5804"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I22465464","display_name":"University of M\u00fcnster","ror":"https://ror.org/00pd74e08","country_code":"DE","type":"education","lineage":["https://openalex.org/I22465464"]},{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I4210163339","display_name":"Institut de G\u00e9n\u00e9tique Humaine","ror":"https://ror.org/05ee10k25","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I19894307","https://openalex.org/I4210096427","https://openalex.org/I4210163339"]}],"countries":["DE","ES","FR","GB"],"is_corresponding":false,"raw_author_name":"Maria Chatzou","raw_affiliation_strings":["Postdoctoral Researcher at the Institute of Human Genetics, CNRS, in Montpelier, France","Barcelona, Spain","Center for Genomic Regulation (CRG) in Barcelona, Spain, where he leads the Comparative Bioinformatics Group","Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Spain","Institute for Evolution and Bioidiversity at University of Munster, in Munster, Germany","Research Group at EMBL-EBI, in Hixton, Cambridge, UK","Research Technician in Comparative Bioinformatics Group at Center for Genomic Regulation (CRG) in Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Postdoctoral Researcher at the Institute of Human Genetics, CNRS, in Montpelier, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I4210163339"]},{"raw_affiliation_string":"Barcelona, Spain","institution_ids":[]},{"raw_affiliation_string":"Center for Genomic Regulation (CRG) in Barcelona, Spain, where he leads the Comparative Bioinformatics Group","institution_ids":["https://openalex.org/I4210137962"]},{"raw_affiliation_string":"Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Spain","institution_ids":["https://openalex.org/I4210137962"]},{"raw_affiliation_string":"Institute for Evolution and Bioidiversity at University of Munster, in Munster, Germany","institution_ids":["https://openalex.org/I22465464"]},{"raw_affiliation_string":"Research Group at EMBL-EBI, in Hixton, Cambridge, UK","institution_ids":["https://openalex.org/I1303153112"]},{"raw_affiliation_string":"Research Technician in Comparative Bioinformatics Group at Center for Genomic Regulation (CRG) in Barcelona, Spain","institution_ids":["https://openalex.org/I4210137962"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047855078","display_name":"Cedrik Magis","orcid":"https://orcid.org/0000-0003-4368-445X"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I22465464","display_name":"University of M\u00fcnster","ror":"https://ror.org/00pd74e08","country_code":"DE","type":"education","lineage":["https://openalex.org/I22465464"]},{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I4210163339","display_name":"Institut de G\u00e9n\u00e9tique Humaine","ror":"https://ror.org/05ee10k25","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I19894307","https://openalex.org/I4210096427","https://openalex.org/I4210163339"]}],"countries":["DE","ES","FR","GB"],"is_corresponding":false,"raw_author_name":"Cedrik Magis","raw_affiliation_strings":["Postdoctoral Researcher at the Institute of Human Genetics, CNRS, in Montpelier, France","Barcelona, Spain","Center for Genomic Regulation (CRG) in Barcelona, Spain, where he leads the Comparative Bioinformatics Group","Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Spain","Institute for Evolution and Bioidiversity at University of Munster, in Munster, Germany","Research Group at EMBL-EBI, in Hixton, Cambridge, UK","Research Technician in Comparative Bioinformatics Group at Center for Genomic Regulation (CRG) in Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Postdoctoral Researcher at the Institute of Human Genetics, CNRS, in Montpelier, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I4210163339"]},{"raw_affiliation_string":"Barcelona, Spain","institution_ids":[]},{"raw_affiliation_string":"Center for Genomic Regulation (CRG) in Barcelona, Spain, where he leads the Comparative Bioinformatics Group","institution_ids":["https://openalex.org/I4210137962"]},{"raw_affiliation_string":"Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Spain","institution_ids":["https://openalex.org/I4210137962"]},{"raw_affiliation_string":"Institute for Evolution and Bioidiversity at University of Munster, in Munster, Germany","institution_ids":["https://openalex.org/I22465464"]},{"raw_affiliation_string":"Research Group at EMBL-EBI, in Hixton, Cambridge, UK","institution_ids":["https://openalex.org/I1303153112"]},{"raw_affiliation_string":"Research Technician in Comparative Bioinformatics Group at Center for Genomic Regulation (CRG) in Barcelona, Spain","institution_ids":["https://openalex.org/I4210137962"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007504298","display_name":"Jia\u2010Ming Chang","orcid":"https://orcid.org/0000-0002-6711-1739"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I22465464","display_name":"University of M\u00fcnster","ror":"https://ror.org/00pd74e08","country_code":"DE","type":"education","lineage":["https://openalex.org/I22465464"]},{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I4210163339","display_name":"Institut de G\u00e9n\u00e9tique Humaine","ror":"https://ror.org/05ee10k25","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I19894307","https://openalex.org/I4210096427","https://openalex.org/I4210163339"]}],"countries":["DE","ES","FR","GB"],"is_corresponding":false,"raw_author_name":"Jia-Ming Chang","raw_affiliation_strings":["Postdoctoral Researcher at the Institute of Human Genetics, CNRS, in Montpelier, France","Barcelona, Spain","Center for Genomic Regulation (CRG) in Barcelona, Spain, where he leads the Comparative Bioinformatics Group","Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Spain","Institute for Evolution and Bioidiversity at University of Munster, in Munster, Germany","Research Group at EMBL-EBI, in Hixton, Cambridge, UK","Research Technician in Comparative Bioinformatics Group at Center for Genomic Regulation (CRG) in Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Postdoctoral Researcher at the Institute of Human Genetics, CNRS, in Montpelier, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I4210163339"]},{"raw_affiliation_string":"Barcelona, Spain","institution_ids":[]},{"raw_affiliation_string":"Center for Genomic Regulation (CRG) in Barcelona, Spain, where he leads the Comparative Bioinformatics Group","institution_ids":["https://openalex.org/I4210137962"]},{"raw_affiliation_string":"Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Spain","institution_ids":["https://openalex.org/I4210137962"]},{"raw_affiliation_string":"Institute for Evolution and Bioidiversity at University of Munster, in Munster, Germany","institution_ids":["https://openalex.org/I22465464"]},{"raw_affiliation_string":"Research Group at EMBL-EBI, in Hixton, Cambridge, UK","institution_ids":["https://openalex.org/I1303153112"]},{"raw_affiliation_string":"Research Technician in Comparative Bioinformatics Group at Center for Genomic Regulation (CRG) in Barcelona, Spain","institution_ids":["https://openalex.org/I4210137962"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075543102","display_name":"Carsten Kemena","orcid":"https://orcid.org/0000-0002-2416-9842"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I22465464","display_name":"University of M\u00fcnster","ror":"https://ror.org/00pd74e08","country_code":"DE","type":"education","lineage":["https://openalex.org/I22465464"]},{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I4210163339","display_name":"Institut de G\u00e9n\u00e9tique Humaine","ror":"https://ror.org/05ee10k25","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I19894307","https://openalex.org/I4210096427","https://openalex.org/I4210163339"]}],"countries":["DE","ES","FR","GB"],"is_corresponding":false,"raw_author_name":"Carsten Kemena","raw_affiliation_strings":["Postdoctoral Researcher at the Institute of Human Genetics, CNRS, in Montpelier, France","Barcelona, Spain","Center for Genomic Regulation (CRG) in Barcelona, Spain, where he leads the Comparative Bioinformatics Group","Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Spain","Institute for Evolution and Bioidiversity at University of Munster, in Munster, Germany","Research Group at EMBL-EBI, in Hixton, Cambridge, UK","Research Technician in Comparative Bioinformatics Group at Center for Genomic Regulation (CRG) in Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Postdoctoral Researcher at the Institute of Human Genetics, CNRS, in Montpelier, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I4210163339"]},{"raw_affiliation_string":"Barcelona, Spain","institution_ids":[]},{"raw_affiliation_string":"Center for Genomic Regulation (CRG) in Barcelona, Spain, where he leads the Comparative Bioinformatics Group","institution_ids":["https://openalex.org/I4210137962"]},{"raw_affiliation_string":"Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Spain","institution_ids":["https://openalex.org/I4210137962"]},{"raw_affiliation_string":"Institute for Evolution and Bioidiversity at University of Munster, in Munster, Germany","institution_ids":["https://openalex.org/I22465464"]},{"raw_affiliation_string":"Research Group at EMBL-EBI, in Hixton, Cambridge, UK","institution_ids":["https://openalex.org/I1303153112"]},{"raw_affiliation_string":"Research Technician in Comparative Bioinformatics Group at Center for Genomic Regulation (CRG) in Barcelona, Spain","institution_ids":["https://openalex.org/I4210137962"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044922581","display_name":"Giovanni Bussotti","orcid":"https://orcid.org/0000-0002-4078-7413"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I22465464","display_name":"University of M\u00fcnster","ror":"https://ror.org/00pd74e08","country_code":"DE","type":"education","lineage":["https://openalex.org/I22465464"]},{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I4210163339","display_name":"Institut de G\u00e9n\u00e9tique Humaine","ror":"https://ror.org/05ee10k25","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I19894307","https://openalex.org/I4210096427","https://openalex.org/I4210163339"]}],"countries":["DE","ES","FR","GB"],"is_corresponding":false,"raw_author_name":"Giovanni Bussotti","raw_affiliation_strings":["Postdoctoral Researcher at the Institute of Human Genetics, CNRS, in Montpelier, France","Barcelona, Spain","Center for Genomic Regulation (CRG) in Barcelona, Spain, where he leads the Comparative Bioinformatics Group","Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Spain","Institute for Evolution and Bioidiversity at University of Munster, in Munster, Germany","Research Group at EMBL-EBI, in Hixton, Cambridge, UK","Research Technician in Comparative Bioinformatics Group at Center for Genomic Regulation (CRG) in Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Postdoctoral Researcher at the Institute of Human Genetics, CNRS, in Montpelier, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I4210163339"]},{"raw_affiliation_string":"Barcelona, Spain","institution_ids":[]},{"raw_affiliation_string":"Center for Genomic Regulation (CRG) in Barcelona, Spain, where he leads the Comparative Bioinformatics Group","institution_ids":["https://openalex.org/I4210137962"]},{"raw_affiliation_string":"Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Spain","institution_ids":["https://openalex.org/I4210137962"]},{"raw_affiliation_string":"Institute for Evolution and Bioidiversity at University of Munster, in Munster, Germany","institution_ids":["https://openalex.org/I22465464"]},{"raw_affiliation_string":"Research Group at EMBL-EBI, in Hixton, Cambridge, UK","institution_ids":["https://openalex.org/I1303153112"]},{"raw_affiliation_string":"Research Technician in Comparative Bioinformatics Group at Center for Genomic Regulation (CRG) in Barcelona, Spain","institution_ids":["https://openalex.org/I4210137962"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085000737","display_name":"Ionas Erb","orcid":"https://orcid.org/0000-0002-2331-9714"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I22465464","display_name":"University of M\u00fcnster","ror":"https://ror.org/00pd74e08","country_code":"DE","type":"education","lineage":["https://openalex.org/I22465464"]},{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I4210163339","display_name":"Institut de G\u00e9n\u00e9tique Humaine","ror":"https://ror.org/05ee10k25","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I19894307","https://openalex.org/I4210096427","https://openalex.org/I4210163339"]}],"countries":["DE","ES","FR","GB"],"is_corresponding":false,"raw_author_name":"Ionas Erb","raw_affiliation_strings":["Postdoctoral Researcher at the Institute of Human Genetics, CNRS, in Montpelier, France","Barcelona, Spain","Center for Genomic Regulation (CRG) in Barcelona, Spain, where he leads the Comparative Bioinformatics Group","Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Spain","Institute for Evolution and Bioidiversity at University of Munster, in Munster, Germany","Research Group at EMBL-EBI, in Hixton, Cambridge, UK","Research Technician in Comparative Bioinformatics Group at Center for Genomic Regulation (CRG) in Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Postdoctoral Researcher at the Institute of Human Genetics, CNRS, in Montpelier, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I4210163339"]},{"raw_affiliation_string":"Barcelona, Spain","institution_ids":[]},{"raw_affiliation_string":"Center for Genomic Regulation (CRG) in Barcelona, Spain, where he leads the Comparative Bioinformatics Group","institution_ids":["https://openalex.org/I4210137962"]},{"raw_affiliation_string":"Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Spain","institution_ids":["https://openalex.org/I4210137962"]},{"raw_affiliation_string":"Institute for Evolution and Bioidiversity at University of Munster, in Munster, Germany","institution_ids":["https://openalex.org/I22465464"]},{"raw_affiliation_string":"Research Group at EMBL-EBI, in Hixton, Cambridge, UK","institution_ids":["https://openalex.org/I1303153112"]},{"raw_affiliation_string":"Research Technician in Comparative Bioinformatics Group at Center for Genomic Regulation (CRG) in Barcelona, Spain","institution_ids":["https://openalex.org/I4210137962"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5058332830","display_name":"C\u00e9dric Notredame","orcid":"https://orcid.org/0000-0003-1461-0988"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I22465464","display_name":"University of M\u00fcnster","ror":"https://ror.org/00pd74e08","country_code":"DE","type":"education","lineage":["https://openalex.org/I22465464"]},{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I4210163339","display_name":"Institut de G\u00e9n\u00e9tique Humaine","ror":"https://ror.org/05ee10k25","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I19894307","https://openalex.org/I4210096427","https://openalex.org/I4210163339"]}],"countries":["DE","ES","FR","GB"],"is_corresponding":true,"raw_author_name":"Cedric Notredame","raw_affiliation_strings":["Corresponding author: Cedric Notredame, Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Spain. Tel.: +34 933160271","Postdoctoral Researcher at the Institute of Human Genetics, CNRS, in Montpelier, France","Barcelona, Spain","Center for Genomic Regulation (CRG) in Barcelona, Spain, where he leads the Comparative Bioinformatics Group","Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Spain","Institute for Evolution and Bioidiversity at University of Munster, in Munster, Germany","Research Group at EMBL-EBI, in Hixton, Cambridge, UK","Research Technician in Comparative Bioinformatics Group at Center for Genomic Regulation (CRG) in Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Corresponding author: Cedric Notredame, Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Spain. Tel.: +34 933160271","institution_ids":["https://openalex.org/I4210137962"]},{"raw_affiliation_string":"Postdoctoral Researcher at the Institute of Human Genetics, CNRS, in Montpelier, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I4210163339"]},{"raw_affiliation_string":"Barcelona, Spain","institution_ids":[]},{"raw_affiliation_string":"Center for Genomic Regulation (CRG) in Barcelona, Spain, where he leads the Comparative Bioinformatics Group","institution_ids":["https://openalex.org/I4210137962"]},{"raw_affiliation_string":"Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Spain","institution_ids":["https://openalex.org/I4210137962"]},{"raw_affiliation_string":"Institute for Evolution and Bioidiversity at University of Munster, in Munster, Germany","institution_ids":["https://openalex.org/I22465464"]},{"raw_affiliation_string":"Research Group at EMBL-EBI, in Hixton, Cambridge, UK","institution_ids":["https://openalex.org/I1303153112"]},{"raw_affiliation_string":"Research Technician in Comparative Bioinformatics Group at Center for Genomic Regulation (CRG) in Barcelona, Spain","institution_ids":["https://openalex.org/I4210137962"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5058332830"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I1303153112","https://openalex.org/I22465464","https://openalex.org/I4210137962","https://openalex.org/I4210163339"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":4.1346,"has_fulltext":true,"cited_by_count":247,"citation_normalized_percentile":{"value":0.94948591,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"17","issue":"6","first_page":"1009","last_page":"1023"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7055423259735107},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5981205701828003},{"id":"https://openalex.org/keywords/reliability","display_name":"Reliability (semiconductor)","score":0.48083266615867615},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4321024715900421},{"id":"https://openalex.org/keywords/section","display_name":"Section (typography)","score":0.4196990728378296},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4120497405529022},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3741310238838196},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1464027464389801},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08152684569358826}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7055423259735107},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5981205701828003},{"id":"https://openalex.org/C43214815","wikidata":"https://www.wikidata.org/wiki/Q7310987","display_name":"Reliability (semiconductor)","level":3,"score":0.48083266615867615},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4321024715900421},{"id":"https://openalex.org/C2780129039","wikidata":"https://www.wikidata.org/wiki/Q1931107","display_name":"Section (typography)","level":2,"score":0.4196990728378296},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4120497405529022},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3741310238838196},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1464027464389801},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08152684569358826},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C163258240","wikidata":"https://www.wikidata.org/wiki/Q25342","display_name":"Power (physics)","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbv099","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbv099","pdf_url":"https://academic.oup.com/bib/article-pdf/17/6/1009/8280322/bbv099.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26615024","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26615024","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:open-archive.highwire.org:bib:17/6/1009","is_oa":false,"landing_page_url":"http://bib.oxfordjournals.org/cgi/content/short/17/6/1009","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/bib/bbv099","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbv099","pdf_url":"https://academic.oup.com/bib/article-pdf/17/6/1009/8280322/bbv099.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals","score":0.46000000834465027}],"awards":[{"id":"https://openalex.org/G5418912364","display_name":null,"funder_award_id":"BFU2014","funder_id":"https://openalex.org/F4320321837","funder_display_name":"Ministerio de Econom\u00eda y Competitividad"}],"funders":[{"id":"https://openalex.org/F4320321837","display_name":"Ministerio de Econom\u00eda y Competitividad","ror":"https://ror.org/034900433"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2258865027.pdf","grobid_xml":"https://content.openalex.org/works/W2258865027.grobid-xml"},"referenced_works_count":139,"referenced_works":["https://openalex.org/W110198413","https://openalex.org/W1519266993","https://openalex.org/W1522740115","https://openalex.org/W1588822927","https://openalex.org/W1646393397","https://openalex.org/W1866488244","https://openalex.org/W1909512798","https://openalex.org/W1963544263","https://openalex.org/W1967864248","https://openalex.org/W1976148686","https://openalex.org/W1978014862","https://openalex.org/W1981584745","https://openalex.org/W1984675364","https://openalex.org/W1987856282","https://openalex.org/W1988512789","https://openalex.org/W1994288562","https://openalex.org/W1996681309","https://openalex.org/W1999051528","https://openalex.org/W2003062976","https://openalex.org/W2007668764","https://openalex.org/W2016185554","https://openalex.org/W2018216725","https://openalex.org/W2024665422","https://openalex.org/W2026828265","https://openalex.org/W2033339460","https://openalex.org/W2036295979","https://openalex.org/W2049796549","https://openalex.org/W2052841473","https://openalex.org/W2056251063","https://openalex.org/W2060791849","https://openalex.org/W2066047071","https://openalex.org/W2074231493","https://openalex.org/W2074830661","https://openalex.org/W2081833503","https://openalex.org/W2083201277","https://openalex.org/W2090748603","https://openalex.org/W2092672051","https://openalex.org/W2095145214","https://openalex.org/W2097386339","https://openalex.org/W2097706568","https://openalex.org/W2099383450","https://openalex.org/W2101220662","https://openalex.org/W2101443157","https://openalex.org/W2101969356","https://openalex.org/W2102941368","https://openalex.org/W2103130355","https://openalex.org/W2103296919","https://openalex.org/W2103465619","https://openalex.org/W2103899452","https://openalex.org/W2105006906","https://openalex.org/W2106882534","https://openalex.org/W2107029482","https://openalex.org/W2108770512","https://openalex.org/W2110241016","https://openalex.org/W2110919845","https://openalex.org/W2111773652","https://openalex.org/W2111823792","https://openalex.org/W2112132489","https://openalex.org/W2113109530","https://openalex.org/W2115215562","https://openalex.org/W2115394533","https://openalex.org/W2115888213","https://openalex.org/W2118851904","https://openalex.org/W2120418017","https://openalex.org/W2120866529","https://openalex.org/W2120958393","https://openalex.org/W2122035121","https://openalex.org/W2122097054","https://openalex.org/W2125372717","https://openalex.org/W2126718812","https://openalex.org/W2127122014","https://openalex.org/W2127164334","https://openalex.org/W2127322768","https://openalex.org/W2127444222","https://openalex.org/W2127774996","https://openalex.org/W2127860913","https://openalex.org/W2128482297","https://openalex.org/W2130060890","https://openalex.org/W2130350435","https://openalex.org/W2130625618","https://openalex.org/W2130909239","https://openalex.org/W2131386482","https://openalex.org/W2132926880","https://openalex.org/W2132972885","https://openalex.org/W2133279153","https://openalex.org/W2134033103","https://openalex.org/W2134595458","https://openalex.org/W2134941776","https://openalex.org/W2136085935","https://openalex.org/W2137076005","https://openalex.org/W2139541234","https://openalex.org/W2140651796","https://openalex.org/W2140872496","https://openalex.org/W2140890018","https://openalex.org/W2141274012","https://openalex.org/W2141670298","https://openalex.org/W2141831115","https://openalex.org/W2142116796","https://openalex.org/W2142722597","https://openalex.org/W2142768277","https://openalex.org/W2142829010","https://openalex.org/W2143292980","https://openalex.org/W2143882457","https://openalex.org/W2144362290","https://openalex.org/W2144366714","https://openalex.org/W2144767153","https://openalex.org/W2146416885","https://openalex.org/W2148311769","https://openalex.org/W2151651919","https://openalex.org/W2151994495","https://openalex.org/W2152688507","https://openalex.org/W2153187042","https://openalex.org/W2154730959","https://openalex.org/W2154845231","https://openalex.org/W2155237411","https://openalex.org/W2155320525","https://openalex.org/W2155858493","https://openalex.org/W2156563976","https://openalex.org/W2157552136","https://openalex.org/W2157921567","https://openalex.org/W2159957100","https://openalex.org/W2163860567","https://openalex.org/W2164299596","https://openalex.org/W2164786886","https://openalex.org/W2165686834","https://openalex.org/W2166486463","https://openalex.org/W2166745309","https://openalex.org/W2166825456","https://openalex.org/W2167040380","https://openalex.org/W2167673155","https://openalex.org/W2168614088","https://openalex.org/W2169239541","https://openalex.org/W2169459078","https://openalex.org/W2170157200","https://openalex.org/W2170702273","https://openalex.org/W2214912059","https://openalex.org/W2412439129","https://openalex.org/W2803927613","https://openalex.org/W3103560422"],"related_works":["https://openalex.org/W2560853036","https://openalex.org/W2566696415","https://openalex.org/W1563787543","https://openalex.org/W4239980664","https://openalex.org/W4249026152","https://openalex.org/W4231213805","https://openalex.org/W4244585678","https://openalex.org/W2909241626","https://openalex.org/W2890304493","https://openalex.org/W590015412"],"abstract_inverted_index":{"This":[0],"review":[1,32,69],"provides":[2],"an":[3,71],"overview":[4,72],"on":[5,21,61,73,82],"the":[6,25,50,59,68],"development":[7],"of":[8,67,86],"Multiple":[9],"sequence":[10],"alignment":[11],"(MSA)":[12],"methods":[13],"and":[14,39,48,54,79],"their":[15,80],"main":[16],"applications.":[17],"It":[18],"is":[19],"focused":[20],"progress":[22],"made":[23],"over":[24],"past":[26],"decade.":[27],"The":[28,42,64],"three":[29],"first":[30],"sections":[31],"recent":[33],"algorithmic":[34,84],"developments":[35],"for":[36],"protein,":[37],"RNA/DNA":[38],"genomic":[40],"alignments.":[41],"fourth":[43],"section":[44],"deals":[45],"with":[46,58],"benchmarks":[47],"explores":[49],"relationship":[51],"between":[52],"empirical":[53],"simulated":[55],"data,":[56],"along":[57],"impact":[60],"method":[62],"developments.":[63],"last":[65],"part":[66],"gives":[70],"available":[74,87],"MSA":[75],"local":[76],"reliability":[77],"estimators":[78],"dependence":[81],"various":[83],"properties":[85],"methods.":[88]},"counts_by_year":[{"year":2026,"cited_by_count":15},{"year":2025,"cited_by_count":26},{"year":2024,"cited_by_count":49},{"year":2023,"cited_by_count":33},{"year":2022,"cited_by_count":27},{"year":2021,"cited_by_count":25},{"year":2020,"cited_by_count":24},{"year":2019,"cited_by_count":17},{"year":2018,"cited_by_count":12},{"year":2017,"cited_by_count":11},{"year":2016,"cited_by_count":7},{"year":2012,"cited_by_count":1}],"updated_date":"2026-07-31T08:31:51.225901","created_date":"2025-10-10T00:00:00"}
