{"id":"https://openalex.org/W2209883607","doi":"https://doi.org/10.1093/bib/bbv097","title":"In the loop: promoter\u2013enhancer interactions and bioinformatics","display_name":"In the loop: promoter\u2013enhancer interactions and bioinformatics","publication_year":2015,"publication_date":"2015-11-19","ids":{"openalex":"https://openalex.org/W2209883607","doi":"https://doi.org/10.1093/bib/bbv097","mag":"2209883607","pmid":"https://pubmed.ncbi.nlm.nih.gov/26586731"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbv097","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbv097","pdf_url":"https://academic.oup.com/bib/article-pdf/17/6/980/8280186/bbv097.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/17/6/980/8280186/bbv097.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103131933","display_name":"Antonio Mora","orcid":"https://orcid.org/0000-0003-1344-1131"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Antonio Mora","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054500587","display_name":"Geir Kjetil Sandve","orcid":"https://orcid.org/0000-0002-4959-1409"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Geir Kjetil Sandve","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059186443","display_name":"Odd S. Gabrielsen","orcid":"https://orcid.org/0000-0002-5975-8815"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Odd Stokke Gabrielsen","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5066558348","display_name":"Ragnhild Eskeland","orcid":"https://orcid.org/0000-0003-2789-3171"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ragnhild Eskeland","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3885,"currency":"USD","value_usd":3885},"apc_paid":null,"fwci":4.1627,"has_fulltext":false,"cited_by_count":133,"citation_normalized_percentile":{"value":0.94966638,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"17","issue":"6","first_page":"bbv097","last_page":"bbv097"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9918000102043152,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/chromatin","display_name":"Chromatin","score":0.7664556503295898},{"id":"https://openalex.org/keywords/enhancer","display_name":"Enhancer","score":0.754001259803772},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6570804119110107},{"id":"https://openalex.org/keywords/chia-pet","display_name":"ChIA-PET","score":0.5967730283737183},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5232906937599182},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5023980140686035},{"id":"https://openalex.org/keywords/epigenetics","display_name":"Epigenetics","score":0.49109458923339844},{"id":"https://openalex.org/keywords/regulation-of-gene-expression","display_name":"Regulation of gene expression","score":0.4461805820465088},{"id":"https://openalex.org/keywords/transcriptional-regulation","display_name":"Transcriptional regulation","score":0.4366011619567871},{"id":"https://openalex.org/keywords/promoter","display_name":"Promoter","score":0.42860424518585205},{"id":"https://openalex.org/keywords/mechanism","display_name":"Mechanism (biology)","score":0.4177543520927429},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.36481183767318726},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.33901911973953247},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.32719871401786804},{"id":"https://openalex.org/keywords/transcription-factor","display_name":"Transcription factor","score":0.3122401535511017},{"id":"https://openalex.org/keywords/chromatin-remodeling","display_name":"Chromatin remodeling","score":0.21543392539024353},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.20267918705940247}],"concepts":[{"id":"https://openalex.org/C83640560","wikidata":"https://www.wikidata.org/wiki/Q180951","display_name":"Chromatin","level":3,"score":0.7664556503295898},{"id":"https://openalex.org/C111936080","wikidata":"https://www.wikidata.org/wiki/Q913367","display_name":"Enhancer","level":4,"score":0.754001259803772},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6570804119110107},{"id":"https://openalex.org/C67258246","wikidata":"https://www.wikidata.org/wiki/Q5065897","display_name":"ChIA-PET","level":5,"score":0.5967730283737183},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5232906937599182},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5023980140686035},{"id":"https://openalex.org/C41091548","wikidata":"https://www.wikidata.org/wiki/Q26939","display_name":"Epigenetics","level":3,"score":0.49109458923339844},{"id":"https://openalex.org/C165864922","wikidata":"https://www.wikidata.org/wiki/Q411391","display_name":"Regulation of gene expression","level":3,"score":0.4461805820465088},{"id":"https://openalex.org/C27153228","wikidata":"https://www.wikidata.org/wiki/Q3787274","display_name":"Transcriptional regulation","level":4,"score":0.4366011619567871},{"id":"https://openalex.org/C101762097","wikidata":"https://www.wikidata.org/wiki/Q224093","display_name":"Promoter","level":4,"score":0.42860424518585205},{"id":"https://openalex.org/C89611455","wikidata":"https://www.wikidata.org/wiki/Q6804646","display_name":"Mechanism (biology)","level":2,"score":0.4177543520927429},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.36481183767318726},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.33901911973953247},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.32719871401786804},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.3122401535511017},{"id":"https://openalex.org/C167227067","wikidata":"https://www.wikidata.org/wiki/Q5113739","display_name":"Chromatin remodeling","level":4,"score":0.21543392539024353},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.20267918705940247},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004742","descriptor_name":"Enhancer Elements, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004742","descriptor_name":"Enhancer Elements, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004742","descriptor_name":"Enhancer Elements, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bib/bbv097","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbv097","pdf_url":"https://academic.oup.com/bib/article-pdf/17/6/980/8280186/bbv097.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26586731","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26586731","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":"Journal Article"},{"id":"pmh:oai:europepmc.org:4088879","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5142009","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:open-archive.highwire.org:bib:17/6/980","is_oa":false,"landing_page_url":"http://bib.oxfordjournals.org/cgi/content/short/17/6/980","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/bib/bbv097","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbv097","pdf_url":"https://academic.oup.com/bib/article-pdf/17/6/980/8280186/bbv097.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W2209883607.pdf"},"referenced_works_count":167,"referenced_works":["https://openalex.org/W1484529414","https://openalex.org/W1501807279","https://openalex.org/W1507360397","https://openalex.org/W1579796122","https://openalex.org/W1605145036","https://openalex.org/W1776547251","https://openalex.org/W1923882567","https://openalex.org/W1945579058","https://openalex.org/W1964963969","https://openalex.org/W1965100590","https://openalex.org/W1965863160","https://openalex.org/W1970831058","https://openalex.org/W1971578941","https://openalex.org/W1973062929","https://openalex.org/W1976595861","https://openalex.org/W1977308882","https://openalex.org/W1977752183","https://openalex.org/W1977855308","https://openalex.org/W1978901723","https://openalex.org/W1980023815","https://openalex.org/W1981030303","https://openalex.org/W1984340155","https://openalex.org/W1985621639","https://openalex.org/W1986408963","https://openalex.org/W1986586739","https://openalex.org/W1987371782","https://openalex.org/W1989471545","https://openalex.org/W1991149014","https://openalex.org/W1993470489","https://openalex.org/W1993886784","https://openalex.org/W1994310996","https://openalex.org/W1996208624","https://openalex.org/W1999532833","https://openalex.org/W1999622475","https://openalex.org/W2001576815","https://openalex.org/W2002401750","https://openalex.org/W2002404684","https://openalex.org/W2003354368","https://openalex.org/W2004190259","https://openalex.org/W2004966039","https://openalex.org/W2006334511","https://openalex.org/W2009576540","https://openalex.org/W2010789111","https://openalex.org/W2011463791","https://openalex.org/W2014317080","https://openalex.org/W2014677321","https://openalex.org/W2014787267","https://openalex.org/W2015416439","https://openalex.org/W2015845481","https://openalex.org/W2017435800","https://openalex.org/W2017840637","https://openalex.org/W2023186182","https://openalex.org/W2024640399","https://openalex.org/W2025166703","https://openalex.org/W2028022357","https://openalex.org/W2030030642","https://openalex.org/W2030545812","https://openalex.org/W2033253509","https://openalex.org/W2036663020","https://openalex.org/W2038218774","https://openalex.org/W2039309132","https://openalex.org/W2046649548","https://openalex.org/W2046926525","https://openalex.org/W2047005748","https://openalex.org/W2047734673","https://openalex.org/W2053293102","https://openalex.org/W2054444927","https://openalex.org/W2054936253","https://openalex.org/W2056482755","https://openalex.org/W2057893650","https://openalex.org/W2058306877","https://openalex.org/W2065006553","https://openalex.org/W2065577331","https://openalex.org/W2067956561","https://openalex.org/W2068427957","https://openalex.org/W2068751730","https://openalex.org/W2070021921","https://openalex.org/W2070196639","https://openalex.org/W2070509435","https://openalex.org/W2073026107","https://openalex.org/W2073378063","https://openalex.org/W2076154138","https://openalex.org/W2079177924","https://openalex.org/W2083245183","https://openalex.org/W2083329607","https://openalex.org/W2089894746","https://openalex.org/W2090037139","https://openalex.org/W2091533196","https://openalex.org/W2091548199","https://openalex.org/W2094160175","https://openalex.org/W2094468530","https://openalex.org/W2094584847","https://openalex.org/W2095529378","https://openalex.org/W2095736730","https://openalex.org/W2095884976","https://openalex.org/W2096010243","https://openalex.org/W2097798909","https://openalex.org/W2098651180","https://openalex.org/W2101422563","https://openalex.org/W2101600343","https://openalex.org/W2101754326","https://openalex.org/W2102619694","https://openalex.org/W2105778988","https://openalex.org/W2106208827","https://openalex.org/W2109802732","https://openalex.org/W2110014529","https://openalex.org/W2110174983","https://openalex.org/W2113494828","https://openalex.org/W2113974339","https://openalex.org/W2116038761","https://openalex.org/W2116584178","https://openalex.org/W2116622696","https://openalex.org/W2116868464","https://openalex.org/W2117792884","https://openalex.org/W2118334191","https://openalex.org/W2121548473","https://openalex.org/W2123564569","https://openalex.org/W2125397535","https://openalex.org/W2126406928","https://openalex.org/W2128106349","https://openalex.org/W2128355851","https://openalex.org/W2129656350","https://openalex.org/W2131004167","https://openalex.org/W2133484520","https://openalex.org/W2133727333","https://openalex.org/W2134631895","https://openalex.org/W2137198307","https://openalex.org/W2138438730","https://openalex.org/W2140475749","https://openalex.org/W2142270559","https://openalex.org/W2145174846","https://openalex.org/W2145619687","https://openalex.org/W2147312179","https://openalex.org/W2147524392","https://openalex.org/W2148589630","https://openalex.org/W2150090219","https://openalex.org/W2150313376","https://openalex.org/W2150455380","https://openalex.org/W2150729756","https://openalex.org/W2151362772","https://openalex.org/W2152435464","https://openalex.org/W2153093716","https://openalex.org/W2154077612","https://openalex.org/W2154746182","https://openalex.org/W2156714600","https://openalex.org/W2158804744","https://openalex.org/W2159164310","https://openalex.org/W2161212572","https://openalex.org/W2163605769","https://openalex.org/W2163618254","https://openalex.org/W2166496717","https://openalex.org/W2167197669","https://openalex.org/W2167776710","https://openalex.org/W2168191908","https://openalex.org/W2168602111","https://openalex.org/W2169173315","https://openalex.org/W2169389191","https://openalex.org/W2169640819","https://openalex.org/W2170748964","https://openalex.org/W2171096629","https://openalex.org/W2172042768","https://openalex.org/W2175853567","https://openalex.org/W2209806217","https://openalex.org/W2941307081","https://openalex.org/W4211071958","https://openalex.org/W4232942257","https://openalex.org/W4233310067"],"related_works":["https://openalex.org/W1971558040","https://openalex.org/W3156071777","https://openalex.org/W4283214369","https://openalex.org/W4296940635","https://openalex.org/W3208446472","https://openalex.org/W4281254649","https://openalex.org/W2791084809","https://openalex.org/W2914108095","https://openalex.org/W2951939896","https://openalex.org/W3139096305"],"abstract_inverted_index":{"Enhancer-promoter":[0],"regulation":[1],"is":[2,28,148],"a":[3,68,139,168],"fundamental":[4],"mechanism":[5],"underlying":[6],"differential":[7],"transcriptional":[8,76],"regulation.":[9,77],"Spatial":[10],"chromatin":[11,73,87,96],"organization":[12],"brings":[13],"remote":[14],"enhancers":[15],"in":[16,21,162],"contact":[17],"with":[18],"target":[19,55],"promoters":[20],"cis":[22],"to":[23,51,86,113,137],"regulate":[24],"gene":[25],"expression.":[26],"There":[27],"considerable":[29],"evidence":[30],"for":[31,171],"promoter-enhancer":[32],"interactions":[33],"(PEIs).":[34],"In":[35,63],"the":[36,72,150,163],"recent":[37],"years,":[38],"genome-wide":[39,95],"analyses":[40],"have":[41,134],"identified":[42],"signatures":[43],"and":[44,60,75,83,91,110,115,123,155],"mapped":[45],"novel":[46],"enhancers;":[47],"however,":[48],"being":[49],"able":[50],"precisely":[52],"identify":[53],"their":[54],"gene(s)":[56],"requires":[57],"massive":[58],"biological":[59],"bioinformatics":[61,107,160],"efforts.":[62],"this":[64,165],"review,":[65],"we":[66,101,127],"give":[67],"short":[69],"overview":[70],"of":[71,106,117,131,142,152],"landscape":[74],"We":[78],"discuss":[79],"some":[80,158],"key":[81],"concepts":[82],"problems":[84],"related":[85,112],"interaction":[88,97],"detection":[89],"technologies,":[90],"emerging":[92],"knowledge":[93],"from":[94],"data":[98,121],"sets.":[99],"Then,":[100],"critically":[102],"review":[103,166],"different":[104],"types":[105],"analysis":[108],"methods":[109],"tools":[111],"representation":[114],"visualization":[116],"PEI":[118,124,173],"data,":[119],"raw":[120],"processing":[122],"prediction.":[125],"Lastly,":[126],"provide":[128],"specific":[129],"examples":[130],"how":[132],"PEIs":[133],"been":[135],"used":[136],"elucidate":[138],"functional":[140],"role":[141],"non-coding":[143],"single-nucleotide":[144],"polymorphisms.":[145],"The":[146],"topic":[147],"at":[149],"forefront":[151],"epigenetic":[153],"research,":[154],"by":[156],"highlighting":[157],"future":[159,172],"challenges":[161],"field,":[164],"provides":[167],"comprehensive":[169],"background":[170],"studies.":[174]},"counts_by_year":[{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":12},{"year":2023,"cited_by_count":11},{"year":2022,"cited_by_count":15},{"year":2021,"cited_by_count":15},{"year":2020,"cited_by_count":20},{"year":2019,"cited_by_count":24},{"year":2018,"cited_by_count":17},{"year":2017,"cited_by_count":11},{"year":2016,"cited_by_count":2}],"updated_date":"2026-08-26T07:47:46.906454","created_date":"2025-10-10T00:00:00"}
