{"id":"https://openalex.org/W2244015304","doi":"https://doi.org/10.1093/bib/bbv080","title":"Public data and open source tools for multi-assay genomic investigation of disease","display_name":"Public data and open source tools for multi-assay genomic investigation of disease","publication_year":2015,"publication_date":"2015-10-12","ids":{"openalex":"https://openalex.org/W2244015304","doi":"https://doi.org/10.1093/bib/bbv080","mag":"2244015304","pmid":"https://pubmed.ncbi.nlm.nih.gov/26463000"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbv080","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbv080","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.1093/bib/bbv080","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5069769944","display_name":"Lavanya Kannan","orcid":null},"institutions":[{"id":"https://openalex.org/I1292894508","display_name":"Roswell Park Comprehensive Cancer Center","ror":"https://ror.org/0499dwk57","country_code":"US","type":"facility","lineage":["https://openalex.org/I1292894508"]},{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I174216632","display_name":"City University of New York","ror":"https://ror.org/00453a208","country_code":"US","type":"education","lineage":["https://openalex.org/I174216632"]},{"id":"https://openalex.org/I180539885","display_name":"Walsh University","ror":"https://ror.org/003ammk23","country_code":"US","type":"education","lineage":["https://openalex.org/I180539885"]},{"id":"https://openalex.org/I28166907","display_name":"Karolinska Institutet","ror":"https://ror.org/056d84691","country_code":"SE","type":"education","lineage":["https://openalex.org/I28166907"]},{"id":"https://openalex.org/I39694355","display_name":"Hunter College","ror":"https://ror.org/00g2xk477","country_code":"US","type":"education","lineage":["https://openalex.org/I39694355"]},{"id":"https://openalex.org/I4210117453","display_name":"Dana-Farber Cancer Institute","ror":"https://ror.org/02jzgtq86","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210117453"]},{"id":"https://openalex.org/I4210118410","display_name":"Institut th\u00e9matique G\u00e9n\u00e9tique, g\u00e9nomique et bioinformatique","ror":"https://ror.org/01rfstj90","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488","https://openalex.org/I4210118410"]}],"countries":["ES","FR","SE","US"],"is_corresponding":false,"raw_author_name":"Lavanya Kannan","raw_affiliation_strings":["The authors are researchers in bioinformatics, biostatistics and systems biology, spanning a wide range of geographic locations and topical areas. All are actively engaged in analysis and methods development for multi-assay omics experiments. Lavanya Kannan is a researcher at the City University of New York School of Public Health at Hunter College, and is involved in methods of integrating and visualizing genomic data in Bioconductor. Her interests include network biology, phylogenetics and data integration","Bioinformatics and Biostatistics at the Universitat Pompeu Fabra in Barcelona, Spain","City University of New York School of Public Health at Hunter College,","Dana-Farber Cancer Institute, Boston","Johns Hopkins University","Levi Waldron, 2180 3rd Avenue, New York, NY, 10040, U.S","Roswell Park Cancer Institute,","Unit of Computational Medicine at Karolinska Institutet in Sweden,","York School of Public Health at Hunter College"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The authors are researchers in bioinformatics, biostatistics and systems biology, spanning a wide range of geographic locations and topical areas. All are actively engaged in analysis and methods development for multi-assay omics experiments. Lavanya Kannan is a researcher at the City University of New York School of Public Health at Hunter College, and is involved in methods of integrating and visualizing genomic data in Bioconductor. Her interests include network biology, phylogenetics and data integration","institution_ids":["https://openalex.org/I4210118410"]},{"raw_affiliation_string":"Bioinformatics and Biostatistics at the Universitat Pompeu Fabra in Barcelona, Spain","institution_ids":["https://openalex.org/I170486558"]},{"raw_affiliation_string":"City University of New York School of Public Health at Hunter College,","institution_ids":["https://openalex.org/I174216632","https://openalex.org/I39694355"]},{"raw_affiliation_string":"Dana-Farber Cancer Institute, Boston","institution_ids":["https://openalex.org/I4210117453"]},{"raw_affiliation_string":"Johns Hopkins University","institution_ids":["https://openalex.org/I145311948"]},{"raw_affiliation_string":"Levi Waldron, 2180 3rd Avenue, New York, NY, 10040, U.S","institution_ids":["https://openalex.org/I180539885"]},{"raw_affiliation_string":"Roswell Park Cancer Institute,","institution_ids":["https://openalex.org/I1292894508"]},{"raw_affiliation_string":"Unit of Computational Medicine at Karolinska Institutet in Sweden,","institution_ids":["https://openalex.org/I28166907"]},{"raw_affiliation_string":"York School of Public Health at Hunter College","institution_ids":["https://openalex.org/I39694355"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063530956","display_name":"Marcel Ramos","orcid":"https://orcid.org/0000-0002-3242-0582"},"institutions":[{"id":"https://openalex.org/I1292894508","display_name":"Roswell Park Comprehensive Cancer Center","ror":"https://ror.org/0499dwk57","country_code":"US","type":"facility","lineage":["https://openalex.org/I1292894508"]},{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I174216632","display_name":"City University of New York","ror":"https://ror.org/00453a208","country_code":"US","type":"education","lineage":["https://openalex.org/I174216632"]},{"id":"https://openalex.org/I180539885","display_name":"Walsh University","ror":"https://ror.org/003ammk23","country_code":"US","type":"education","lineage":["https://openalex.org/I180539885"]},{"id":"https://openalex.org/I28166907","display_name":"Karolinska Institutet","ror":"https://ror.org/056d84691","country_code":"SE","type":"education","lineage":["https://openalex.org/I28166907"]},{"id":"https://openalex.org/I392282","display_name":"University at Albany, State University of New York","ror":"https://ror.org/012zs8222","country_code":"US","type":"education","lineage":["https://openalex.org/I392282"]},{"id":"https://openalex.org/I39694355","display_name":"Hunter College","ror":"https://ror.org/00g2xk477","country_code":"US","type":"education","lineage":["https://openalex.org/I39694355"]},{"id":"https://openalex.org/I4210117453","display_name":"Dana-Farber Cancer Institute","ror":"https://ror.org/02jzgtq86","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210117453"]}],"countries":["ES","SE","US"],"is_corresponding":false,"raw_author_name":"Marcel Ramos","raw_affiliation_strings":["Marcel Ramos is a research associate at the City University of New York School of Public Health at Hunter College. He is working on tools for obtaining The Cancer Genome Atlas data as ready-to-use data sets","Bioinformatics and Biostatistics at the Universitat Pompeu Fabra in Barcelona, Spain","City University of New York School of Public Health at Hunter College,","Dana-Farber Cancer Institute, Boston","Johns Hopkins University","Levi Waldron, 2180 3rd Avenue, New York, NY, 10040, U.S","Roswell Park Cancer Institute,","Unit of Computational Medicine at Karolinska Institutet in Sweden,","York School of Public Health at Hunter College"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Marcel Ramos is a research associate at the City University of New York School of Public Health at Hunter College. He is working on tools for obtaining The Cancer Genome Atlas data as ready-to-use data sets","institution_ids":["https://openalex.org/I392282"]},{"raw_affiliation_string":"Bioinformatics and Biostatistics at the Universitat Pompeu Fabra in Barcelona, Spain","institution_ids":["https://openalex.org/I170486558"]},{"raw_affiliation_string":"City University of New York School of Public Health at Hunter College,","institution_ids":["https://openalex.org/I174216632","https://openalex.org/I39694355"]},{"raw_affiliation_string":"Dana-Farber Cancer Institute, Boston","institution_ids":["https://openalex.org/I4210117453"]},{"raw_affiliation_string":"Johns Hopkins University","institution_ids":["https://openalex.org/I145311948"]},{"raw_affiliation_string":"Levi Waldron, 2180 3rd Avenue, New York, NY, 10040, U.S","institution_ids":["https://openalex.org/I180539885"]},{"raw_affiliation_string":"Roswell Park Cancer Institute,","institution_ids":["https://openalex.org/I1292894508"]},{"raw_affiliation_string":"Unit of Computational Medicine at Karolinska Institutet in Sweden,","institution_ids":["https://openalex.org/I28166907"]},{"raw_affiliation_string":"York School of Public Health at Hunter College","institution_ids":["https://openalex.org/I39694355"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039627791","display_name":"Angela Re","orcid":"https://orcid.org/0000-0002-3179-6967"},"institutions":[{"id":"https://openalex.org/I1292894508","display_name":"Roswell Park Comprehensive Cancer Center","ror":"https://ror.org/0499dwk57","country_code":"US","type":"facility","lineage":["https://openalex.org/I1292894508"]},{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I174216632","display_name":"City University of New York","ror":"https://ror.org/00453a208","country_code":"US","type":"education","lineage":["https://openalex.org/I174216632"]},{"id":"https://openalex.org/I180539885","display_name":"Walsh University","ror":"https://ror.org/003ammk23","country_code":"US","type":"education","lineage":["https://openalex.org/I180539885"]},{"id":"https://openalex.org/I193223587","display_name":"University of Trento","ror":"https://ror.org/05trd4x28","country_code":"IT","type":"education","lineage":["https://openalex.org/I193223587"]},{"id":"https://openalex.org/I28166907","display_name":"Karolinska Institutet","ror":"https://ror.org/056d84691","country_code":"SE","type":"education","lineage":["https://openalex.org/I28166907"]},{"id":"https://openalex.org/I39694355","display_name":"Hunter College","ror":"https://ror.org/00g2xk477","country_code":"US","type":"education","lineage":["https://openalex.org/I39694355"]},{"id":"https://openalex.org/I4210096807","display_name":"Centre for Innovation in Regulatory Science","ror":"https://ror.org/00v71jq68","country_code":"GB","type":"other","lineage":["https://openalex.org/I4210096807"]},{"id":"https://openalex.org/I4210117453","display_name":"Dana-Farber Cancer Institute","ror":"https://ror.org/02jzgtq86","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210117453"]}],"countries":["ES","GB","IT","SE","US"],"is_corresponding":false,"raw_author_name":"Angela Re","raw_affiliation_strings":["Angela Re holds a postdoctoral fellowship at the Centre for Integrative Biology at the University of Trento. She is interested in the analysis of genomics data to study post-transcriptional regulatory mechanisms, their inclusion in regulatory pathways along with their potential relevance in cancer prognosis","Bioinformatics and Biostatistics at the Universitat Pompeu Fabra in Barcelona, Spain","City University of New York School of Public Health at Hunter College,","Dana-Farber Cancer Institute, Boston","Johns Hopkins University","Levi Waldron, 2180 3rd Avenue, New York, NY, 10040, U.S","Roswell Park Cancer Institute,","Unit of Computational Medicine at Karolinska Institutet in Sweden,","York School of Public Health at Hunter College"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Angela Re holds a postdoctoral fellowship at the Centre for Integrative Biology at the University of Trento. She is interested in the analysis of genomics data to study post-transcriptional regulatory mechanisms, their inclusion in regulatory pathways along with their potential relevance in cancer prognosis","institution_ids":["https://openalex.org/I193223587","https://openalex.org/I4210096807"]},{"raw_affiliation_string":"Bioinformatics and Biostatistics at the Universitat Pompeu Fabra in Barcelona, Spain","institution_ids":["https://openalex.org/I170486558"]},{"raw_affiliation_string":"City University of New York School of Public Health at Hunter College,","institution_ids":["https://openalex.org/I174216632","https://openalex.org/I39694355"]},{"raw_affiliation_string":"Dana-Farber Cancer Institute, Boston","institution_ids":["https://openalex.org/I4210117453"]},{"raw_affiliation_string":"Johns Hopkins University","institution_ids":["https://openalex.org/I145311948"]},{"raw_affiliation_string":"Levi Waldron, 2180 3rd Avenue, New York, NY, 10040, U.S","institution_ids":["https://openalex.org/I180539885"]},{"raw_affiliation_string":"Roswell Park Cancer Institute,","institution_ids":["https://openalex.org/I1292894508"]},{"raw_affiliation_string":"Unit of Computational Medicine at Karolinska Institutet in Sweden,","institution_ids":["https://openalex.org/I28166907"]},{"raw_affiliation_string":"York School of Public Health at Hunter College","institution_ids":["https://openalex.org/I39694355"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090035556","display_name":"Nehm\u00e9 El-Hachem","orcid":"https://orcid.org/0000-0002-5778-5342"},"institutions":[{"id":"https://openalex.org/I1292894508","display_name":"Roswell Park Comprehensive Cancer Center","ror":"https://ror.org/0499dwk57","country_code":"US","type":"facility","lineage":["https://openalex.org/I1292894508"]},{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I174216632","display_name":"City University of New York","ror":"https://ror.org/00453a208","country_code":"US","type":"education","lineage":["https://openalex.org/I174216632"]},{"id":"https://openalex.org/I180539885","display_name":"Walsh University","ror":"https://ror.org/003ammk23","country_code":"US","type":"education","lineage":["https://openalex.org/I180539885"]},{"id":"https://openalex.org/I28166907","display_name":"Karolinska Institutet","ror":"https://ror.org/056d84691","country_code":"SE","type":"education","lineage":["https://openalex.org/I28166907"]},{"id":"https://openalex.org/I39694355","display_name":"Hunter College","ror":"https://ror.org/00g2xk477","country_code":"US","type":"education","lineage":["https://openalex.org/I39694355"]},{"id":"https://openalex.org/I4210117453","display_name":"Dana-Farber Cancer Institute","ror":"https://ror.org/02jzgtq86","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210117453"]}],"countries":["ES","SE","US"],"is_corresponding":false,"raw_author_name":"Nehme El-Hachem","raw_affiliation_strings":["Bioinformatics and Biostatistics at the Universitat Pompeu Fabra in Barcelona, Spain","City University of New York School of Public Health at Hunter College,","Dana-Farber Cancer Institute, Boston","Johns Hopkins University","Levi Waldron, 2180 3rd Avenue, New York, NY, 10040, U.S","Roswell Park Cancer Institute,","Unit of Computational Medicine at Karolinska Institutet in Sweden,","York School of Public Health at Hunter College"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics and Biostatistics at the Universitat Pompeu Fabra in Barcelona, Spain","institution_ids":["https://openalex.org/I170486558"]},{"raw_affiliation_string":"City University of New York School of Public Health at Hunter College,","institution_ids":["https://openalex.org/I174216632","https://openalex.org/I39694355"]},{"raw_affiliation_string":"Dana-Farber Cancer Institute, Boston","institution_ids":["https://openalex.org/I4210117453"]},{"raw_affiliation_string":"Johns Hopkins University","institution_ids":["https://openalex.org/I145311948"]},{"raw_affiliation_string":"Levi Waldron, 2180 3rd Avenue, New York, NY, 10040, U.S","institution_ids":["https://openalex.org/I180539885"]},{"raw_affiliation_string":"Roswell Park Cancer Institute,","institution_ids":["https://openalex.org/I1292894508"]},{"raw_affiliation_string":"Unit of Computational Medicine at Karolinska Institutet in Sweden,","institution_ids":["https://openalex.org/I28166907"]},{"raw_affiliation_string":"York School of Public Health at Hunter College","institution_ids":["https://openalex.org/I39694355"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088177470","display_name":"Zhaleh Safikhani","orcid":"https://orcid.org/0000-0002-1429-1692"},"institutions":[{"id":"https://openalex.org/I1292894508","display_name":"Roswell Park Comprehensive Cancer Center","ror":"https://ror.org/0499dwk57","country_code":"US","type":"facility","lineage":["https://openalex.org/I1292894508"]},{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I174216632","display_name":"City University of New York","ror":"https://ror.org/00453a208","country_code":"US","type":"education","lineage":["https://openalex.org/I174216632"]},{"id":"https://openalex.org/I180539885","display_name":"Walsh University","ror":"https://ror.org/003ammk23","country_code":"US","type":"education","lineage":["https://openalex.org/I180539885"]},{"id":"https://openalex.org/I2802654988","display_name":"Princess Margaret Cancer Centre","ror":"https://ror.org/03zayce58","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441","https://openalex.org/I2802654988"]},{"id":"https://openalex.org/I28166907","display_name":"Karolinska Institutet","ror":"https://ror.org/056d84691","country_code":"SE","type":"education","lineage":["https://openalex.org/I28166907"]},{"id":"https://openalex.org/I39694355","display_name":"Hunter College","ror":"https://ror.org/00g2xk477","country_code":"US","type":"education","lineage":["https://openalex.org/I39694355"]},{"id":"https://openalex.org/I4210117453","display_name":"Dana-Farber Cancer Institute","ror":"https://ror.org/02jzgtq86","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210117453"]}],"countries":["CA","ES","SE","US"],"is_corresponding":false,"raw_author_name":"Zhaleh Safikhani","raw_affiliation_strings":["Zhaleh Safikhani is a postdoctoral research fellow at Princess Margaret Cancer Centre, Canada. She is currently investigating the association between tumor-specific transcripts and drug sensitivity","Bioinformatics and Biostatistics at the Universitat Pompeu Fabra in Barcelona, Spain","City University of New York School of Public Health at Hunter College,","Dana-Farber Cancer Institute, Boston","Johns Hopkins University","Levi Waldron, 2180 3rd Avenue, New York, NY, 10040, U.S","Roswell Park Cancer Institute,","Unit of Computational Medicine at Karolinska Institutet in Sweden,","York School of Public Health at Hunter College"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Zhaleh Safikhani is a postdoctoral research fellow at Princess Margaret Cancer Centre, Canada. She is currently investigating the association between tumor-specific transcripts and drug sensitivity","institution_ids":["https://openalex.org/I2802654988"]},{"raw_affiliation_string":"Bioinformatics and Biostatistics at the Universitat Pompeu Fabra in Barcelona, Spain","institution_ids":["https://openalex.org/I170486558"]},{"raw_affiliation_string":"City University of New York School of Public Health at Hunter College,","institution_ids":["https://openalex.org/I174216632","https://openalex.org/I39694355"]},{"raw_affiliation_string":"Dana-Farber Cancer Institute, Boston","institution_ids":["https://openalex.org/I4210117453"]},{"raw_affiliation_string":"Johns Hopkins University","institution_ids":["https://openalex.org/I145311948"]},{"raw_affiliation_string":"Levi Waldron, 2180 3rd Avenue, New York, NY, 10040, U.S","institution_ids":["https://openalex.org/I180539885"]},{"raw_affiliation_string":"Roswell Park Cancer Institute,","institution_ids":["https://openalex.org/I1292894508"]},{"raw_affiliation_string":"Unit of Computational Medicine at Karolinska Institutet in Sweden,","institution_ids":["https://openalex.org/I28166907"]},{"raw_affiliation_string":"York School of Public Health at Hunter College","institution_ids":["https://openalex.org/I39694355"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029171790","display_name":"Deena M.A. Gendoo","orcid":null},"institutions":[{"id":"https://openalex.org/I1292894508","display_name":"Roswell Park Comprehensive Cancer Center","ror":"https://ror.org/0499dwk57","country_code":"US","type":"facility","lineage":["https://openalex.org/I1292894508"]},{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I174216632","display_name":"City University of New York","ror":"https://ror.org/00453a208","country_code":"US","type":"education","lineage":["https://openalex.org/I174216632"]},{"id":"https://openalex.org/I180539885","display_name":"Walsh University","ror":"https://ror.org/003ammk23","country_code":"US","type":"education","lineage":["https://openalex.org/I180539885"]},{"id":"https://openalex.org/I2802654988","display_name":"Princess Margaret Cancer Centre","ror":"https://ror.org/03zayce58","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441","https://openalex.org/I2802654988"]},{"id":"https://openalex.org/I28166907","display_name":"Karolinska Institutet","ror":"https://ror.org/056d84691","country_code":"SE","type":"education","lineage":["https://openalex.org/I28166907"]},{"id":"https://openalex.org/I39694355","display_name":"Hunter College","ror":"https://ror.org/00g2xk477","country_code":"US","type":"education","lineage":["https://openalex.org/I39694355"]},{"id":"https://openalex.org/I4210117453","display_name":"Dana-Farber Cancer Institute","ror":"https://ror.org/02jzgtq86","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210117453"]}],"countries":["CA","ES","SE","US"],"is_corresponding":false,"raw_author_name":"Deena M.A. Gendoo","raw_affiliation_strings":["Deena M.A. Gendoo is a postdoctoral research fellow at the Princess Margaret Cancer Centre, Canada. Her research focuses on translational bioinformatics in multiple cancer types, as well as pharmacogenomics and drug repurposing for personalized medicine","Bioinformatics and Biostatistics at the Universitat Pompeu Fabra in Barcelona, Spain","City University of New York School of Public Health at Hunter College,","Dana-Farber Cancer Institute, Boston","Johns Hopkins University","Levi Waldron, 2180 3rd Avenue, New York, NY, 10040, U.S","Roswell Park Cancer Institute,","Unit of Computational Medicine at Karolinska Institutet in Sweden,","York School of Public Health at Hunter College"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Deena M.A. Gendoo is a postdoctoral research fellow at the Princess Margaret Cancer Centre, Canada. Her research focuses on translational bioinformatics in multiple cancer types, as well as pharmacogenomics and drug repurposing for personalized medicine","institution_ids":["https://openalex.org/I2802654988"]},{"raw_affiliation_string":"Bioinformatics and Biostatistics at the Universitat Pompeu Fabra in Barcelona, Spain","institution_ids":["https://openalex.org/I170486558"]},{"raw_affiliation_string":"City University of New York School of Public Health at Hunter College,","institution_ids":["https://openalex.org/I174216632","https://openalex.org/I39694355"]},{"raw_affiliation_string":"Dana-Farber Cancer Institute, Boston","institution_ids":["https://openalex.org/I4210117453"]},{"raw_affiliation_string":"Johns Hopkins University","institution_ids":["https://openalex.org/I145311948"]},{"raw_affiliation_string":"Levi Waldron, 2180 3rd Avenue, New York, NY, 10040, U.S","institution_ids":["https://openalex.org/I180539885"]},{"raw_affiliation_string":"Roswell Park Cancer Institute,","institution_ids":["https://openalex.org/I1292894508"]},{"raw_affiliation_string":"Unit of Computational Medicine at Karolinska Institutet in Sweden,","institution_ids":["https://openalex.org/I28166907"]},{"raw_affiliation_string":"York School of Public Health at Hunter College","institution_ids":["https://openalex.org/I39694355"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005450827","display_name":"Sean Davis","orcid":"https://orcid.org/0000-0002-8991-6458"},"institutions":[{"id":"https://openalex.org/I1292894508","display_name":"Roswell Park Comprehensive Cancer Center","ror":"https://ror.org/0499dwk57","country_code":"US","type":"facility","lineage":["https://openalex.org/I1292894508"]},{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I174216632","display_name":"City University of New York","ror":"https://ror.org/00453a208","country_code":"US","type":"education","lineage":["https://openalex.org/I174216632"]},{"id":"https://openalex.org/I180539885","display_name":"Walsh University","ror":"https://ror.org/003ammk23","country_code":"US","type":"education","lineage":["https://openalex.org/I180539885"]},{"id":"https://openalex.org/I28166907","display_name":"Karolinska Institutet","ror":"https://ror.org/056d84691","country_code":"SE","type":"education","lineage":["https://openalex.org/I28166907"]},{"id":"https://openalex.org/I39694355","display_name":"Hunter College","ror":"https://ror.org/00g2xk477","country_code":"US","type":"education","lineage":["https://openalex.org/I39694355"]},{"id":"https://openalex.org/I4210091794","display_name":"Office of the Director","ror":"https://ror.org/00fj8a872","country_code":"US","type":"other","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210091794"]},{"id":"https://openalex.org/I4210117453","display_name":"Dana-Farber Cancer Institute","ror":"https://ror.org/02jzgtq86","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210117453"]}],"countries":["ES","SE","US"],"is_corresponding":false,"raw_author_name":"Sean Davis","raw_affiliation_strings":["Sean Davis is a pediatric oncologist at the National Cancer Institute of the National Institutes of Health who works broadly in the areas of genomics and bioinformatics of high-throughput data. He has a strong interest in developing software and tools for interpreting genomic data and leveraging public data for discovery","Bioinformatics and Biostatistics at the Universitat Pompeu Fabra in Barcelona, Spain","City University of New York School of Public Health at Hunter College,","Dana-Farber Cancer Institute, Boston","Johns Hopkins University","Levi Waldron, 2180 3rd Avenue, New York, NY, 10040, U.S","Roswell Park Cancer Institute,","Unit of Computational Medicine at Karolinska Institutet in Sweden,","York School of Public Health at Hunter College"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Sean Davis is a pediatric oncologist at the National Cancer Institute of the National Institutes of Health who works broadly in the areas of genomics and bioinformatics of high-throughput data. He has a strong interest in developing software and tools for interpreting genomic data and leveraging public data for discovery","institution_ids":["https://openalex.org/I4210091794"]},{"raw_affiliation_string":"Bioinformatics and Biostatistics at the Universitat Pompeu Fabra in Barcelona, Spain","institution_ids":["https://openalex.org/I170486558"]},{"raw_affiliation_string":"City University of New York School of Public Health at Hunter College,","institution_ids":["https://openalex.org/I174216632","https://openalex.org/I39694355"]},{"raw_affiliation_string":"Dana-Farber Cancer Institute, Boston","institution_ids":["https://openalex.org/I4210117453"]},{"raw_affiliation_string":"Johns Hopkins University","institution_ids":["https://openalex.org/I145311948"]},{"raw_affiliation_string":"Levi Waldron, 2180 3rd Avenue, New York, NY, 10040, U.S","institution_ids":["https://openalex.org/I180539885"]},{"raw_affiliation_string":"Roswell Park Cancer Institute,","institution_ids":["https://openalex.org/I1292894508"]},{"raw_affiliation_string":"Unit of Computational Medicine at Karolinska Institutet in Sweden,","institution_ids":["https://openalex.org/I28166907"]},{"raw_affiliation_string":"York School of Public Health at Hunter College","institution_ids":["https://openalex.org/I39694355"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078466508","display_name":"David G\u00f3mez-Cabrero","orcid":"https://orcid.org/0000-0003-4186-3788"},"institutions":[{"id":"https://openalex.org/I1292894508","display_name":"Roswell Park Comprehensive Cancer Center","ror":"https://ror.org/0499dwk57","country_code":"US","type":"facility","lineage":["https://openalex.org/I1292894508"]},{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I174216632","display_name":"City University of New York","ror":"https://ror.org/00453a208","country_code":"US","type":"education","lineage":["https://openalex.org/I174216632"]},{"id":"https://openalex.org/I180539885","display_name":"Walsh University","ror":"https://ror.org/003ammk23","country_code":"US","type":"education","lineage":["https://openalex.org/I180539885"]},{"id":"https://openalex.org/I28166907","display_name":"Karolinska Institutet","ror":"https://ror.org/056d84691","country_code":"SE","type":"education","lineage":["https://openalex.org/I28166907"]},{"id":"https://openalex.org/I39694355","display_name":"Hunter College","ror":"https://ror.org/00g2xk477","country_code":"US","type":"education","lineage":["https://openalex.org/I39694355"]},{"id":"https://openalex.org/I4210117453","display_name":"Dana-Farber Cancer Institute","ror":"https://ror.org/02jzgtq86","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210117453"]}],"countries":["ES","SE","US"],"is_corresponding":false,"raw_author_name":"David Gomez-Cabrero","raw_affiliation_strings":["Bioinformatics and Biostatistics at the Universitat Pompeu Fabra in Barcelona, Spain","City University of New York School of Public Health at Hunter College,","Dana-Farber Cancer Institute, Boston","Johns Hopkins University","Levi Waldron, 2180 3rd Avenue, New York, NY, 10040, U.S","Roswell Park Cancer Institute,","Unit of Computational Medicine at Karolinska Institutet in Sweden,","York School of Public Health at Hunter College"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics and Biostatistics at the Universitat Pompeu Fabra in Barcelona, Spain","institution_ids":["https://openalex.org/I170486558"]},{"raw_affiliation_string":"City University of New York School of Public Health at Hunter College,","institution_ids":["https://openalex.org/I174216632","https://openalex.org/I39694355"]},{"raw_affiliation_string":"Dana-Farber Cancer Institute, Boston","institution_ids":["https://openalex.org/I4210117453"]},{"raw_affiliation_string":"Johns Hopkins University","institution_ids":["https://openalex.org/I145311948"]},{"raw_affiliation_string":"Levi Waldron, 2180 3rd Avenue, New York, NY, 10040, U.S","institution_ids":["https://openalex.org/I180539885"]},{"raw_affiliation_string":"Roswell Park Cancer Institute,","institution_ids":["https://openalex.org/I1292894508"]},{"raw_affiliation_string":"Unit of Computational Medicine at Karolinska Institutet in Sweden,","institution_ids":["https://openalex.org/I28166907"]},{"raw_affiliation_string":"York School of Public Health at Hunter College","institution_ids":["https://openalex.org/I39694355"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071137998","display_name":"Robert Castelo","orcid":"https://orcid.org/0000-0003-2229-4508"},"institutions":[{"id":"https://openalex.org/I1292894508","display_name":"Roswell Park Comprehensive Cancer Center","ror":"https://ror.org/0499dwk57","country_code":"US","type":"facility","lineage":["https://openalex.org/I1292894508"]},{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I174216632","display_name":"City University of New York","ror":"https://ror.org/00453a208","country_code":"US","type":"education","lineage":["https://openalex.org/I174216632"]},{"id":"https://openalex.org/I180539885","display_name":"Walsh University","ror":"https://ror.org/003ammk23","country_code":"US","type":"education","lineage":["https://openalex.org/I180539885"]},{"id":"https://openalex.org/I28166907","display_name":"Karolinska Institutet","ror":"https://ror.org/056d84691","country_code":"SE","type":"education","lineage":["https://openalex.org/I28166907"]},{"id":"https://openalex.org/I39694355","display_name":"Hunter College","ror":"https://ror.org/00g2xk477","country_code":"US","type":"education","lineage":["https://openalex.org/I39694355"]},{"id":"https://openalex.org/I4210117453","display_name":"Dana-Farber Cancer Institute","ror":"https://ror.org/02jzgtq86","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210117453"]}],"countries":["ES","SE","US"],"is_corresponding":false,"raw_author_name":"Robert Castelo","raw_affiliation_strings":["Bioinformatics and Biostatistics at the Universitat Pompeu Fabra in Barcelona, Spain","City University of New York School of Public Health at Hunter College,","Dana-Farber Cancer Institute, Boston","Johns Hopkins University","Levi Waldron, 2180 3rd Avenue, New York, NY, 10040, U.S","Roswell Park Cancer Institute,","Unit of Computational Medicine at Karolinska Institutet in Sweden,","York School of Public Health at Hunter College"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics and Biostatistics at the Universitat Pompeu Fabra in Barcelona, Spain","institution_ids":["https://openalex.org/I170486558"]},{"raw_affiliation_string":"City University of New York School of Public Health at Hunter College,","institution_ids":["https://openalex.org/I174216632","https://openalex.org/I39694355"]},{"raw_affiliation_string":"Dana-Farber Cancer Institute, Boston","institution_ids":["https://openalex.org/I4210117453"]},{"raw_affiliation_string":"Johns Hopkins University","institution_ids":["https://openalex.org/I145311948"]},{"raw_affiliation_string":"Levi Waldron, 2180 3rd Avenue, New York, NY, 10040, U.S","institution_ids":["https://openalex.org/I180539885"]},{"raw_affiliation_string":"Roswell Park Cancer Institute,","institution_ids":["https://openalex.org/I1292894508"]},{"raw_affiliation_string":"Unit of Computational Medicine at Karolinska Institutet in Sweden,","institution_ids":["https://openalex.org/I28166907"]},{"raw_affiliation_string":"York School of Public Health at Hunter College","institution_ids":["https://openalex.org/I39694355"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053857063","display_name":"Kasper D. Hansen","orcid":"https://orcid.org/0000-0003-0086-0687"},"institutions":[{"id":"https://openalex.org/I1292894508","display_name":"Roswell Park Comprehensive Cancer Center","ror":"https://ror.org/0499dwk57","country_code":"US","type":"facility","lineage":["https://openalex.org/I1292894508"]},{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I174216632","display_name":"City University of New York","ror":"https://ror.org/00453a208","country_code":"US","type":"education","lineage":["https://openalex.org/I174216632"]},{"id":"https://openalex.org/I180539885","display_name":"Walsh University","ror":"https://ror.org/003ammk23","country_code":"US","type":"education","lineage":["https://openalex.org/I180539885"]},{"id":"https://openalex.org/I28166907","display_name":"Karolinska Institutet","ror":"https://ror.org/056d84691","country_code":"SE","type":"education","lineage":["https://openalex.org/I28166907"]},{"id":"https://openalex.org/I39694355","display_name":"Hunter College","ror":"https://ror.org/00g2xk477","country_code":"US","type":"education","lineage":["https://openalex.org/I39694355"]},{"id":"https://openalex.org/I4210117453","display_name":"Dana-Farber Cancer Institute","ror":"https://ror.org/02jzgtq86","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210117453"]},{"id":"https://openalex.org/I4210151837","display_name":"High Throughput Biology (United States)","ror":"https://ror.org/05h1bjp83","country_code":"US","type":"company","lineage":["https://openalex.org/I4210151837"]}],"countries":["ES","SE","US"],"is_corresponding":false,"raw_author_name":"Kasper D. Hansen","raw_affiliation_strings":["Kasper D. Hansen is an assistant professor in Biostatistics at Johns Hopkins University. He works on statistical approaches to analyze high-throughput biological data and is a longtime contributor to the Bioconductor project","Bioinformatics and Biostatistics at the Universitat Pompeu Fabra in Barcelona, Spain","City University of New York School of Public Health at Hunter College,","Dana-Farber Cancer Institute, Boston","Johns Hopkins University","Levi Waldron, 2180 3rd Avenue, New York, NY, 10040, U.S","Roswell Park Cancer Institute,","Unit of Computational Medicine at Karolinska Institutet in Sweden,","York School of Public Health at Hunter College"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Kasper D. Hansen is an assistant professor in Biostatistics at Johns Hopkins University. He works on statistical approaches to analyze high-throughput biological data and is a longtime contributor to the Bioconductor project","institution_ids":["https://openalex.org/I145311948","https://openalex.org/I4210151837"]},{"raw_affiliation_string":"Bioinformatics and Biostatistics at the Universitat Pompeu Fabra in Barcelona, Spain","institution_ids":["https://openalex.org/I170486558"]},{"raw_affiliation_string":"City University of New York School of Public Health at Hunter College,","institution_ids":["https://openalex.org/I174216632","https://openalex.org/I39694355"]},{"raw_affiliation_string":"Dana-Farber Cancer Institute, Boston","institution_ids":["https://openalex.org/I4210117453"]},{"raw_affiliation_string":"Johns Hopkins University","institution_ids":["https://openalex.org/I145311948"]},{"raw_affiliation_string":"Levi Waldron, 2180 3rd Avenue, New York, NY, 10040, U.S","institution_ids":["https://openalex.org/I180539885"]},{"raw_affiliation_string":"Roswell Park Cancer Institute,","institution_ids":["https://openalex.org/I1292894508"]},{"raw_affiliation_string":"Unit of Computational Medicine at Karolinska Institutet in Sweden,","institution_ids":["https://openalex.org/I28166907"]},{"raw_affiliation_string":"York School of Public Health at Hunter College","institution_ids":["https://openalex.org/I39694355"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081015175","display_name":"Vincent J. Carey","orcid":"https://orcid.org/0000-0003-4046-0063"},"institutions":[{"id":"https://openalex.org/I1292894508","display_name":"Roswell Park Comprehensive Cancer Center","ror":"https://ror.org/0499dwk57","country_code":"US","type":"facility","lineage":["https://openalex.org/I1292894508"]},{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I174216632","display_name":"City University of New York","ror":"https://ror.org/00453a208","country_code":"US","type":"education","lineage":["https://openalex.org/I174216632"]},{"id":"https://openalex.org/I180539885","display_name":"Walsh University","ror":"https://ror.org/003ammk23","country_code":"US","type":"education","lineage":["https://openalex.org/I180539885"]},{"id":"https://openalex.org/I28166907","display_name":"Karolinska Institutet","ror":"https://ror.org/056d84691","country_code":"SE","type":"education","lineage":["https://openalex.org/I28166907"]},{"id":"https://openalex.org/I39694355","display_name":"Hunter College","ror":"https://ror.org/00g2xk477","country_code":"US","type":"education","lineage":["https://openalex.org/I39694355"]},{"id":"https://openalex.org/I4210117453","display_name":"Dana-Farber Cancer Institute","ror":"https://ror.org/02jzgtq86","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210117453"]},{"id":"https://openalex.org/I4210142901","display_name":"Vienna Biocenter","ror":"https://ror.org/04khwmr87","country_code":"AT","type":"other","lineage":["https://openalex.org/I4210142901"]}],"countries":["AT","ES","SE","US"],"is_corresponding":false,"raw_author_name":"Vincent J. Carey","raw_affiliation_strings":["Vince Carey is an associate professor of Medicine (Biostatistics) at Harvard Medical School and has been a core developer of Bioconductor since its inception","Bioinformatics and Biostatistics at the Universitat Pompeu Fabra in Barcelona, Spain","City University of New York School of Public Health at Hunter College,","Dana-Farber Cancer Institute, Boston","Johns Hopkins University","Levi Waldron, 2180 3rd Avenue, New York, NY, 10040, U.S","Roswell Park Cancer Institute,","Unit of Computational Medicine at Karolinska Institutet in Sweden,","York School of Public Health at Hunter College"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Vince Carey is an associate professor of Medicine (Biostatistics) at Harvard Medical School and has been a core developer of Bioconductor since its inception","institution_ids":["https://openalex.org/I4210142901"]},{"raw_affiliation_string":"Bioinformatics and Biostatistics at the Universitat Pompeu Fabra in Barcelona, Spain","institution_ids":["https://openalex.org/I170486558"]},{"raw_affiliation_string":"City University of New York School of Public Health at Hunter College,","institution_ids":["https://openalex.org/I174216632","https://openalex.org/I39694355"]},{"raw_affiliation_string":"Dana-Farber Cancer Institute, Boston","institution_ids":["https://openalex.org/I4210117453"]},{"raw_affiliation_string":"Johns Hopkins University","institution_ids":["https://openalex.org/I145311948"]},{"raw_affiliation_string":"Levi Waldron, 2180 3rd Avenue, New York, NY, 10040, U.S","institution_ids":["https://openalex.org/I180539885"]},{"raw_affiliation_string":"Roswell Park Cancer Institute,","institution_ids":["https://openalex.org/I1292894508"]},{"raw_affiliation_string":"Unit of Computational Medicine at Karolinska Institutet in Sweden,","institution_ids":["https://openalex.org/I28166907"]},{"raw_affiliation_string":"York School of Public Health at Hunter College","institution_ids":["https://openalex.org/I39694355"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011002985","display_name":"Martin Morgan","orcid":"https://orcid.org/0000-0002-5874-8148"},"institutions":[{"id":"https://openalex.org/I1292894508","display_name":"Roswell Park Comprehensive Cancer Center","ror":"https://ror.org/0499dwk57","country_code":"US","type":"facility","lineage":["https://openalex.org/I1292894508"]},{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I174216632","display_name":"City University of New York","ror":"https://ror.org/00453a208","country_code":"US","type":"education","lineage":["https://openalex.org/I174216632"]},{"id":"https://openalex.org/I180539885","display_name":"Walsh University","ror":"https://ror.org/003ammk23","country_code":"US","type":"education","lineage":["https://openalex.org/I180539885"]},{"id":"https://openalex.org/I28166907","display_name":"Karolinska Institutet","ror":"https://ror.org/056d84691","country_code":"SE","type":"education","lineage":["https://openalex.org/I28166907"]},{"id":"https://openalex.org/I39694355","display_name":"Hunter College","ror":"https://ror.org/00g2xk477","country_code":"US","type":"education","lineage":["https://openalex.org/I39694355"]},{"id":"https://openalex.org/I4210117453","display_name":"Dana-Farber Cancer Institute","ror":"https://ror.org/02jzgtq86","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210117453"]},{"id":"https://openalex.org/I4210151837","display_name":"High Throughput Biology (United States)","ror":"https://ror.org/05h1bjp83","country_code":"US","type":"company","lineage":["https://openalex.org/I4210151837"]}],"countries":["ES","SE","US"],"is_corresponding":false,"raw_author_name":"Martin Morgan","raw_affiliation_strings":["Martin Morgan is an associate professor in Biostatistics and Bioinformatics at Roswell Park Cancer Institute, and current leader of the Bioconductor project for the analysis and comprehension of high-throughput genomic data","Bioinformatics and Biostatistics at the Universitat Pompeu Fabra in Barcelona, Spain","City University of New York School of Public Health at Hunter College,","Dana-Farber Cancer Institute, Boston","Johns Hopkins University","Levi Waldron, 2180 3rd Avenue, New York, NY, 10040, U.S","Roswell Park Cancer Institute,","Unit of Computational Medicine at Karolinska Institutet in Sweden,","York School of Public Health at Hunter College"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Martin Morgan is an associate professor in Biostatistics and Bioinformatics at Roswell Park Cancer Institute, and current leader of the Bioconductor project for the analysis and comprehension of high-throughput genomic data","institution_ids":["https://openalex.org/I4210151837"]},{"raw_affiliation_string":"Bioinformatics and Biostatistics at the Universitat Pompeu Fabra in Barcelona, Spain","institution_ids":["https://openalex.org/I170486558"]},{"raw_affiliation_string":"City University of New York School of Public Health at Hunter College,","institution_ids":["https://openalex.org/I174216632","https://openalex.org/I39694355"]},{"raw_affiliation_string":"Dana-Farber Cancer Institute, Boston","institution_ids":["https://openalex.org/I4210117453"]},{"raw_affiliation_string":"Johns Hopkins University","institution_ids":["https://openalex.org/I145311948"]},{"raw_affiliation_string":"Levi Waldron, 2180 3rd Avenue, New York, NY, 10040, U.S","institution_ids":["https://openalex.org/I180539885"]},{"raw_affiliation_string":"Roswell Park Cancer Institute,","institution_ids":["https://openalex.org/I1292894508"]},{"raw_affiliation_string":"Unit of Computational Medicine at Karolinska Institutet in Sweden,","institution_ids":["https://openalex.org/I28166907"]},{"raw_affiliation_string":"York School of Public Health at Hunter College","institution_ids":["https://openalex.org/I39694355"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082180580","display_name":"Aed\u00edn C. Culhane","orcid":"https://orcid.org/0000-0002-1395-9734"},"institutions":[{"id":"https://openalex.org/I1292894508","display_name":"Roswell Park Comprehensive Cancer Center","ror":"https://ror.org/0499dwk57","country_code":"US","type":"facility","lineage":["https://openalex.org/I1292894508"]},{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I174216632","display_name":"City University of New York","ror":"https://ror.org/00453a208","country_code":"US","type":"education","lineage":["https://openalex.org/I174216632"]},{"id":"https://openalex.org/I180539885","display_name":"Walsh University","ror":"https://ror.org/003ammk23","country_code":"US","type":"education","lineage":["https://openalex.org/I180539885"]},{"id":"https://openalex.org/I28166907","display_name":"Karolinska Institutet","ror":"https://ror.org/056d84691","country_code":"SE","type":"education","lineage":["https://openalex.org/I28166907"]},{"id":"https://openalex.org/I39694355","display_name":"Hunter College","ror":"https://ror.org/00g2xk477","country_code":"US","type":"education","lineage":["https://openalex.org/I39694355"]},{"id":"https://openalex.org/I4210117453","display_name":"Dana-Farber Cancer Institute","ror":"https://ror.org/02jzgtq86","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210117453"]}],"countries":["ES","SE","US"],"is_corresponding":false,"raw_author_name":"Aed\u00edn C. Culhane","raw_affiliation_strings":["Aed\u00edn C. Culhane is a research scientist at the Dana-Farber Cancer Institute, Boston. Her research includes analysis of high-throughput data arising from genomic, transcriptomic and proteomic studies of cancer, with a particular focus on meta analysis and integration of data from multiple studies","Bioinformatics and Biostatistics at the Universitat Pompeu Fabra in Barcelona, Spain","City University of New York School of Public Health at Hunter College,","Dana-Farber Cancer Institute, Boston","Johns Hopkins University","Levi Waldron, 2180 3rd Avenue, New York, NY, 10040, U.S","Roswell Park Cancer Institute,","Unit of Computational Medicine at Karolinska Institutet in Sweden,","York School of Public Health at Hunter College"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Aed\u00edn C. Culhane is a research scientist at the Dana-Farber Cancer Institute, Boston. Her research includes analysis of high-throughput data arising from genomic, transcriptomic and proteomic studies of cancer, with a particular focus on meta analysis and integration of data from multiple studies","institution_ids":["https://openalex.org/I4210117453"]},{"raw_affiliation_string":"Bioinformatics and Biostatistics at the Universitat Pompeu Fabra in Barcelona, Spain","institution_ids":["https://openalex.org/I170486558"]},{"raw_affiliation_string":"City University of New York School of Public Health at Hunter College,","institution_ids":["https://openalex.org/I174216632","https://openalex.org/I39694355"]},{"raw_affiliation_string":"Dana-Farber Cancer Institute, Boston","institution_ids":["https://openalex.org/I4210117453"]},{"raw_affiliation_string":"Johns Hopkins University","institution_ids":["https://openalex.org/I145311948"]},{"raw_affiliation_string":"Levi Waldron, 2180 3rd Avenue, New York, NY, 10040, U.S","institution_ids":["https://openalex.org/I180539885"]},{"raw_affiliation_string":"Roswell Park Cancer Institute,","institution_ids":["https://openalex.org/I1292894508"]},{"raw_affiliation_string":"Unit of Computational Medicine at Karolinska Institutet in Sweden,","institution_ids":["https://openalex.org/I28166907"]},{"raw_affiliation_string":"York School of Public Health at Hunter College","institution_ids":["https://openalex.org/I39694355"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010487226","display_name":"Benjamin Haibe\u2010Kains","orcid":"https://orcid.org/0000-0002-7684-0079"},"institutions":[{"id":"https://openalex.org/I1292894508","display_name":"Roswell Park Comprehensive Cancer Center","ror":"https://ror.org/0499dwk57","country_code":"US","type":"facility","lineage":["https://openalex.org/I1292894508"]},{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I174216632","display_name":"City University of New York","ror":"https://ror.org/00453a208","country_code":"US","type":"education","lineage":["https://openalex.org/I174216632"]},{"id":"https://openalex.org/I180539885","display_name":"Walsh University","ror":"https://ror.org/003ammk23","country_code":"US","type":"education","lineage":["https://openalex.org/I180539885"]},{"id":"https://openalex.org/I28166907","display_name":"Karolinska Institutet","ror":"https://ror.org/056d84691","country_code":"SE","type":"education","lineage":["https://openalex.org/I28166907"]},{"id":"https://openalex.org/I39694355","display_name":"Hunter College","ror":"https://ror.org/00g2xk477","country_code":"US","type":"education","lineage":["https://openalex.org/I39694355"]},{"id":"https://openalex.org/I4210117453","display_name":"Dana-Farber Cancer Institute","ror":"https://ror.org/02jzgtq86","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210117453"]},{"id":"https://openalex.org/I4210151837","display_name":"High Throughput Biology (United States)","ror":"https://ror.org/05h1bjp83","country_code":"US","type":"company","lineage":["https://openalex.org/I4210151837"]}],"countries":["ES","SE","US"],"is_corresponding":false,"raw_author_name":"Benjamin Haibe-Kains","raw_affiliation_strings":["Benjamin Haibe-Kains is principal investigator at thePrincess Margaret Cancer Centre. His research focuses on the integration of high-throughput data from various sources to improve biomarker discovery, especially incancer","Bioinformatics and Biostatistics at the Universitat Pompeu Fabra in Barcelona, Spain","City University of New York School of Public Health at Hunter College,","Dana-Farber Cancer Institute, Boston","Johns Hopkins University","Levi Waldron, 2180 3rd Avenue, New York, NY, 10040, U.S","Roswell Park Cancer Institute,","Unit of Computational Medicine at Karolinska Institutet in Sweden,","York School of Public Health at Hunter College"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Benjamin Haibe-Kains is principal investigator at thePrincess Margaret Cancer Centre. His research focuses on the integration of high-throughput data from various sources to improve biomarker discovery, especially incancer","institution_ids":["https://openalex.org/I4210151837"]},{"raw_affiliation_string":"Bioinformatics and Biostatistics at the Universitat Pompeu Fabra in Barcelona, Spain","institution_ids":["https://openalex.org/I170486558"]},{"raw_affiliation_string":"City University of New York School of Public Health at Hunter College,","institution_ids":["https://openalex.org/I174216632","https://openalex.org/I39694355"]},{"raw_affiliation_string":"Dana-Farber Cancer Institute, Boston","institution_ids":["https://openalex.org/I4210117453"]},{"raw_affiliation_string":"Johns Hopkins University","institution_ids":["https://openalex.org/I145311948"]},{"raw_affiliation_string":"Levi Waldron, 2180 3rd Avenue, New York, NY, 10040, U.S","institution_ids":["https://openalex.org/I180539885"]},{"raw_affiliation_string":"Roswell Park Cancer Institute,","institution_ids":["https://openalex.org/I1292894508"]},{"raw_affiliation_string":"Unit of Computational Medicine at Karolinska Institutet in Sweden,","institution_ids":["https://openalex.org/I28166907"]},{"raw_affiliation_string":"York School of Public Health at Hunter College","institution_ids":["https://openalex.org/I39694355"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5052283192","display_name":"Levi Waldron","orcid":"https://orcid.org/0000-0003-2725-0694"},"institutions":[{"id":"https://openalex.org/I1292894508","display_name":"Roswell Park Comprehensive Cancer Center","ror":"https://ror.org/0499dwk57","country_code":"US","type":"facility","lineage":["https://openalex.org/I1292894508"]},{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I174216632","display_name":"City University of New York","ror":"https://ror.org/00453a208","country_code":"US","type":"education","lineage":["https://openalex.org/I174216632"]},{"id":"https://openalex.org/I180539885","display_name":"Walsh University","ror":"https://ror.org/003ammk23","country_code":"US","type":"education","lineage":["https://openalex.org/I180539885"]},{"id":"https://openalex.org/I28166907","display_name":"Karolinska Institutet","ror":"https://ror.org/056d84691","country_code":"SE","type":"education","lineage":["https://openalex.org/I28166907"]},{"id":"https://openalex.org/I39694355","display_name":"Hunter College","ror":"https://ror.org/00g2xk477","country_code":"US","type":"education","lineage":["https://openalex.org/I39694355"]},{"id":"https://openalex.org/I4210117453","display_name":"Dana-Farber Cancer Institute","ror":"https://ror.org/02jzgtq86","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210117453"]}],"countries":["ES","SE","US"],"is_corresponding":true,"raw_author_name":"Levi Waldron","raw_affiliation_strings":["Levi Waldron is an assistant professor of biostatistics at the City University of New York School of Public Health at Hunter College, with research interests in integrative genomic data analysis of cancer","Bioinformatics and Biostatistics at the Universitat Pompeu Fabra in Barcelona, Spain","City University of New York School of Public Health at Hunter College,","Dana-Farber Cancer Institute, Boston","Johns Hopkins University","Levi Waldron, 2180 3rd Avenue, New York, NY, 10040, U.S","Roswell Park Cancer Institute,","Unit of Computational Medicine at Karolinska Institutet in Sweden,","York School of Public Health at Hunter College"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Levi Waldron is an assistant professor of biostatistics at the City University of New York School of Public Health at Hunter College, with research interests in integrative genomic data analysis of cancer","institution_ids":["https://openalex.org/I174216632"]},{"raw_affiliation_string":"Bioinformatics and Biostatistics at the Universitat Pompeu Fabra in Barcelona, Spain","institution_ids":["https://openalex.org/I170486558"]},{"raw_affiliation_string":"City University of New York School of Public Health at Hunter College,","institution_ids":["https://openalex.org/I174216632","https://openalex.org/I39694355"]},{"raw_affiliation_string":"Dana-Farber Cancer Institute, Boston","institution_ids":["https://openalex.org/I4210117453"]},{"raw_affiliation_string":"Johns Hopkins University","institution_ids":["https://openalex.org/I145311948"]},{"raw_affiliation_string":"Levi Waldron, 2180 3rd Avenue, New York, NY, 10040, U.S","institution_ids":["https://openalex.org/I180539885"]},{"raw_affiliation_string":"Roswell Park Cancer Institute,","institution_ids":["https://openalex.org/I1292894508"]},{"raw_affiliation_string":"Unit of Computational Medicine at Karolinska Institutet in Sweden,","institution_ids":["https://openalex.org/I28166907"]},{"raw_affiliation_string":"York School of Public Health at Hunter College","institution_ids":["https://openalex.org/I39694355"]}]}],"institutions":[],"countries_distinct_count":8,"institutions_distinct_count":16,"corresponding_author_ids":["https://openalex.org/A5052283192"],"corresponding_institution_ids":["https://openalex.org/I1292894508","https://openalex.org/I145311948","https://openalex.org/I170486558","https://openalex.org/I174216632","https://openalex.org/I180539885","https://openalex.org/I28166907","https://openalex.org/I39694355","https://openalex.org/I4210117453"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":3.864,"has_fulltext":false,"cited_by_count":55,"citation_normalized_percentile":{"value":0.94397917,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"17","issue":"4","first_page":"603","last_page":"615"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pharmacogenomics","display_name":"Pharmacogenomics","score":0.713588297367096},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.655287504196167},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5897115468978882},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5822405219078064},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5094025731086731},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.4363623857498169},{"id":"https://openalex.org/keywords/profiling","display_name":"Profiling (computer programming)","score":0.4325680136680603},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3650045394897461},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.30032679438591003},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.28254982829093933},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.12795305252075195},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.09617882966995239}],"concepts":[{"id":"https://openalex.org/C170734499","wikidata":"https://www.wikidata.org/wiki/Q1152227","display_name":"Pharmacogenomics","level":2,"score":0.713588297367096},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.655287504196167},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5897115468978882},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5822405219078064},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5094025731086731},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.4363623857498169},{"id":"https://openalex.org/C187191949","wikidata":"https://www.wikidata.org/wiki/Q1138496","display_name":"Profiling (computer programming)","level":2,"score":0.4325680136680603},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3650045394897461},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.30032679438591003},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.28254982829093933},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12795305252075195},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09617882966995239},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":8,"locations":[{"id":"doi:10.1093/bib/bbv080","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbv080","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26463000","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26463000","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:kclpure.kcl.ac.uk:openaire/72b44a5a-a659-41bb-bba2-db605dcf682c","is_oa":true,"landing_page_url":"https://kclpure.kcl.ac.uk/portal/en/publications/72b44a5a-a659-41bb-bba2-db605dcf682c","pdf_url":null,"source":{"id":"https://openalex.org/S4306400216","display_name":"Research Portal (King's College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I183935753","host_organization_name":"King's College London","host_organization_lineage":["https://openalex.org/I183935753"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Kannan, L, Ramos, M, Re, A, El-Hachem, N, Safikhani, Z, Gendoo, D M A, Davis, S, Gomez Cabrero Lopez, D, Castelo, R, Hansen, K D, Carey, V J, Morgan, M, Culhane, A C, Haibe-Kains, B & Waldron, L 2016, 'Public data and open source tools for multi-assay genomic investigation of disease', BRIEFINGS IN BIOINFORMATICS, vol. 17, no. 4, bbv080, pp. 603-615. https://doi.org/10.1093/bib/bbv080","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:repositori.upf.edu:10230/28323","is_oa":true,"landing_page_url":"http://hdl.handle.net/10230/28323","pdf_url":null,"source":{"id":"https://openalex.org/S4306402615","display_name":"Repositori digital de la UPF (Universitat Pompeu Fabra)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I170486558","host_organization_name":"Universitat Pompeu Fabra","host_organization_lineage":["https://openalex.org/I170486558"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:irep.ntu.ac.uk:36510","is_oa":false,"landing_page_url":"http://irep.ntu.ac.uk/id/eprint/36510/","pdf_url":null,"source":{"id":"https://openalex.org/S4306400559","display_name":"Nottingham Trent University's Institutional Repository (Nottingham Trent Repository)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I52590639","host_organization_name":"Nottingham Trent University","host_organization_lineage":["https://openalex.org/I52590639"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:kclpure.kcl.ac.uk:publications/72b44a5a-a659-41bb-bba2-db605dcf682c","is_oa":true,"landing_page_url":"http://www.scopus.com/inward/record.url?scp=84991314240&partnerID=8YFLogxK","pdf_url":null,"source":{"id":"https://openalex.org/S4306400216","display_name":"Research Portal (King's College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I183935753","host_organization_name":"King's College London","host_organization_lineage":["https://openalex.org/I183935753"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Kannan, L, Ramos, M, Re, A, El-Hachem, N, Safikhani, Z, Gendoo, D M A, Davis, S, Gomez Cabrero Lopez, D, Castelo, R, Hansen, K D, Carey, V J, Morgan, M, Culhane, A C, Haibe-Kains, B & Waldron, L 2016, 'Public data and open source tools for multi-assay genomic investigation of disease', BRIEFINGS IN BIOINFORMATICS, vol. 17, no. 4, bbv080, pp. 603-615. https://doi.org/10.1093/bib/bbv080","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:open-archive.highwire.org:bib:17/4/603","is_oa":false,"landing_page_url":"http://bib.oxfordjournals.org/cgi/content/short/17/4/603","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pubmedcentral.nih.gov:4945830","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4945830","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbv080","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbv080","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.41999998688697815,"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals"}],"awards":[{"id":"https://openalex.org/G1078746994","display_name":null,"funder_award_id":"MD007599","funder_id":"https://openalex.org/F4320337534","funder_display_name":"National Institute on Minority Health and Health Disparities"},{"id":"https://openalex.org/G1084746053","display_name":"FHCRC High-Performance Computing Cluster","funder_award_id":"1s10od020069-01","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G1220343135","display_name":"Basic and Translational Research Center for Reducing Health Disparities","funder_award_id":"5g12md007599-30","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G1630170607","display_name":"Metabolic factors that control the spectrum of human tuberculosis","funder_award_id":"1u19ai111224-01","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2301218291","display_name":null,"funder_award_id":"U41-HG004059","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G2761814782","display_name":"Cancer Genomics: Integrative and Scalable Solutions in R/Bioconductor","funder_award_id":"5u24ca180996-10","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3895041929","display_name":null,"funder_award_id":"G12 MD007599","funder_id":"https://openalex.org/F4320337534","funder_display_name":"National Institute on Minority Health and Health Disparities"},{"id":"https://openalex.org/G4108877221","display_name":null,"funder_award_id":"U24CA180996","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G5850682332","display_name":null,"funder_award_id":"W81XWH","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6342548228","display_name":null,"funder_award_id":"U19 AI 111224","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"}],"funders":[{"id":"https://openalex.org/F4320311169","display_name":"Cancer Research Society","ror":"https://ror.org/00t38a349"},{"id":"https://openalex.org/F4320311238","display_name":"Fondation Brain Canada","ror":"https://ror.org/01bcmwk98"},{"id":"https://openalex.org/F4320322275","display_name":"Universit\u00e0 degli Studi di Trento","ror":"https://ror.org/05trd4x28"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"},{"id":"https://openalex.org/F4320337355","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69"},{"id":"https://openalex.org/F4320337534","display_name":"National Institute on Minority Health and Health Disparities","ror":"https://ror.org/0493hgw16"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":95,"referenced_works":["https://openalex.org/W1533942137","https://openalex.org/W1567333450","https://openalex.org/W1964904043","https://openalex.org/W1964963969","https://openalex.org/W1967220865","https://openalex.org/W1969647281","https://openalex.org/W1971875278","https://openalex.org/W1973094248","https://openalex.org/W1973638185","https://openalex.org/W1975428912","https://openalex.org/W1976951873","https://openalex.org/W1986223165","https://openalex.org/W1991415686","https://openalex.org/W1993202658","https://openalex.org/W1996112954","https://openalex.org/W1999390452","https://openalex.org/W2002715948","https://openalex.org/W2004879789","https://openalex.org/W2005712021","https://openalex.org/W2005895632","https://openalex.org/W2008051478","https://openalex.org/W2015845481","https://openalex.org/W2018838463","https://openalex.org/W2019961381","https://openalex.org/W2039176012","https://openalex.org/W2043398720","https://openalex.org/W2045953361","https://openalex.org/W2061439657","https://openalex.org/W2064495831","https://openalex.org/W2065675245","https://openalex.org/W2069711147","https://openalex.org/W2082426444","https://openalex.org/W2087312216","https://openalex.org/W2088484810","https://openalex.org/W2094468530","https://openalex.org/W2095150428","https://openalex.org/W2095463689","https://openalex.org/W2096192437","https://openalex.org/W2096485542","https://openalex.org/W2096791516","https://openalex.org/W2097453652","https://openalex.org/W2097553067","https://openalex.org/W2098290597","https://openalex.org/W2098967508","https://openalex.org/W2100239923","https://openalex.org/W2100438487","https://openalex.org/W2101696428","https://openalex.org/W2102659607","https://openalex.org/W2102729801","https://openalex.org/W2103196126","https://openalex.org/W2107940314","https://openalex.org/W2108205473","https://openalex.org/W2108323649","https://openalex.org/W2108559088","https://openalex.org/W2108797218","https://openalex.org/W2110614590","https://openalex.org/W2112811019","https://openalex.org/W2114843025","https://openalex.org/W2116634113","https://openalex.org/W2116662982","https://openalex.org/W2117131162","https://openalex.org/W2118258530","https://openalex.org/W2118432914","https://openalex.org/W2120388891","https://openalex.org/W2121604817","https://openalex.org/W2121906867","https://openalex.org/W2125789330","https://openalex.org/W2126017970","https://openalex.org/W2126345078","https://openalex.org/W2128981244","https://openalex.org/W2129553856","https://openalex.org/W2130448611","https://openalex.org/W2131478115","https://openalex.org/W2131856634","https://openalex.org/W2139549071","https://openalex.org/W2139742898","https://openalex.org/W2143129697","https://openalex.org/W2145290999","https://openalex.org/W2147951581","https://openalex.org/W2148181651","https://openalex.org/W2149441684","https://openalex.org/W2150791259","https://openalex.org/W2152883907","https://openalex.org/W2157381003","https://openalex.org/W2158804744","https://openalex.org/W2159504331","https://openalex.org/W2160697532","https://openalex.org/W2165901933","https://openalex.org/W2166810745","https://openalex.org/W2168841715","https://openalex.org/W2170376772","https://openalex.org/W2259938310","https://openalex.org/W2917738795","https://openalex.org/W4292053589","https://openalex.org/W4399570526"],"related_works":["https://openalex.org/W2556874318","https://openalex.org/W2151018706","https://openalex.org/W2370955888","https://openalex.org/W1557353121","https://openalex.org/W145014062","https://openalex.org/W1966032531","https://openalex.org/W2184120357","https://openalex.org/W2126088744","https://openalex.org/W2366576702","https://openalex.org/W48912384"],"abstract_inverted_index":{"Molecular":[0],"interrogation":[1],"of":[2,59,74,126],"a":[3,22],"biological":[4],"sample":[5],"through":[6],"DNA":[7],"sequencing,":[8],"RNA":[9],"and":[10,14,30,33,45,53,78,84,87,90,109,121],"microRNA":[11],"profiling,":[12],"proteomics":[13],"other":[15,79,88],"assays,":[16],"has":[17],"the":[18,57,72],"potential":[19],"to":[20,26,34,123],"provide":[21],"systems":[23],"level":[24],"approach":[25],"predicting":[27],"treatment":[28],"response":[29],"disease":[31],"progression,":[32],"developing":[35],"precision":[36],"therapies.":[37],"Large":[38],"publicly":[39,118],"funded":[40],"projects":[41],"have":[42],"generated":[43],"extensive":[44],"freely":[46],"available":[47,119],"multi-assay":[48,67],"data":[49,69,93,107,120],"resources;":[50],"however,":[51],"bioinformatic":[52,98],"statistical":[54],"methods":[55],"for":[56,92,116],"analysis":[58],"such":[60],"experiments":[61],"are":[62,101],"still":[63],"nascent.":[64],"We":[65],"review":[66,97,112],"genomic":[68,106],"resources":[70],"in":[71],"areas":[73],"clinical":[75],"oncology,":[76],"pharmacogenomics":[77],"perturbation":[80],"experiments,":[81],"population":[82],"genomics":[83,86],"regulatory":[85],"areas,":[89],"tools":[91,99,122],"acquisition.":[94],"Finally,":[95],"we":[96],"that":[100],"explicitly":[102],"geared":[103],"toward":[104],"integrative":[105,128],"visualization":[108],"analysis.":[110],"This":[111],"provides":[113],"starting":[114],"points":[115],"accessing":[117],"support":[124],"development":[125],"needed":[127],"methods.":[129]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":8},{"year":2018,"cited_by_count":10},{"year":2017,"cited_by_count":10},{"year":2016,"cited_by_count":7},{"year":2015,"cited_by_count":1}],"updated_date":"2026-08-06T08:24:18.245995","created_date":"2025-10-10T00:00:00"}
