{"id":"https://openalex.org/W2274788302","doi":"https://doi.org/10.1093/bib/bbv077","title":"Bioinformatics tools for the analysis of NMR metabolomics studies focused on the identification of clinically relevant biomarkers","display_name":"Bioinformatics tools for the analysis of NMR metabolomics studies focused on the identification of clinically relevant biomarkers","publication_year":2015,"publication_date":"2015-09-04","ids":{"openalex":"https://openalex.org/W2274788302","doi":"https://doi.org/10.1093/bib/bbv077","mag":"2274788302","pmid":"https://pubmed.ncbi.nlm.nih.gov/26342127"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbv077","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbv077","pdf_url":"https://academic.oup.com/bib/article-pdf/17/3/541/6689382/bbv077.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/17/3/541/6689382/bbv077.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5053313040","display_name":"Leonor Puchades\u2010Carrasco","orcid":"https://orcid.org/0000-0003-0340-7458"},"institutions":[{"id":"https://openalex.org/I4210165109","display_name":"Centro de Investigacion Principe Felipe","ror":"https://ror.org/05xr2yq54","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210165109"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Leonor Puchades-Carrasco","raw_affiliation_strings":["Leonor Puchades Carrasco is a postdoctoral researcher at the Structural Biochemistry Laboratory, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe. Her research projects include the evaluation of clinical applications of metabolomics in the oncology area"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Leonor Puchades Carrasco is a postdoctoral researcher at the Structural Biochemistry Laboratory, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe. Her research projects include the evaluation of clinical applications of metabolomics in the oncology area","institution_ids":["https://openalex.org/I4210165109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018275091","display_name":"Martina Palomino\u2010Sch\u00e4tzlein","orcid":"https://orcid.org/0000-0001-7303-0743"},"institutions":[{"id":"https://openalex.org/I4210165109","display_name":"Centro de Investigacion Principe Felipe","ror":"https://ror.org/05xr2yq54","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210165109"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Martina Palomino-Sch\u00e4tzlein","raw_affiliation_strings":["Martina Palomino-Sch\u00e4tzlein is a postdoctoral researcher at the Structural Biochemistry Laboratory, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe. Her research projects include the metabolomic analysis of different biological matrices"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Martina Palomino-Sch\u00e4tzlein is a postdoctoral researcher at the Structural Biochemistry Laboratory, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe. Her research projects include the metabolomic analysis of different biological matrices","institution_ids":["https://openalex.org/I4210165109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034297550","display_name":"Clara P\u00e9rez-Rambla","orcid":null},"institutions":[{"id":"https://openalex.org/I4210165109","display_name":"Centro de Investigacion Principe Felipe","ror":"https://ror.org/05xr2yq54","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210165109"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Clara P\u00e9rez-Rambla","raw_affiliation_strings":["Clara P\u00e9rez-Rambla is a predoctoral student at the Structural Biochemistry Laboratory, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe. Her research projects include the characterization of pre-analytical variations in metabolomics studies"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Clara P\u00e9rez-Rambla is a predoctoral student at the Structural Biochemistry Laboratory, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe. Her research projects include the characterization of pre-analytical variations in metabolomics studies","institution_ids":["https://openalex.org/I4210165109"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5076585215","display_name":"Antonio Pineda\u2010Lucena","orcid":"https://orcid.org/0000-0002-3532-8781"},"institutions":[{"id":"https://openalex.org/I4210165109","display_name":"Centro de Investigacion Principe Felipe","ror":"https://ror.org/05xr2yq54","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210165109"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Antonio Pineda-Lucena","raw_affiliation_strings":["Antonio Pineda-Lucena is the head of the Structural Biochemistry Laboratory, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe. His research interests include structure-based drug design, computational chemistry and metabolomics"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Antonio Pineda-Lucena is the head of the Structural Biochemistry Laboratory, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe. His research interests include structure-based drug design, computational chemistry and metabolomics","institution_ids":["https://openalex.org/I4210165109"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I4210165109"],"apc_list":{"value":3885,"currency":"USD","value_usd":3885},"apc_paid":null,"fwci":1.8039,"has_fulltext":false,"cited_by_count":43,"citation_normalized_percentile":{"value":0.85387513,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"17","issue":"3","first_page":"541","last_page":"552"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12647","display_name":"Traditional Chinese Medicine Studies","score":0.9775999784469604,"subfield":{"id":"https://openalex.org/subfields/2707","display_name":"Complementary and alternative medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10640","display_name":"Spectroscopy and Chemometric Analyses","score":0.9696000218391418,"subfield":{"id":"https://openalex.org/subfields/1602","display_name":"Analytical Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metabolomics","display_name":"Metabolomics","score":0.9502722024917603},{"id":"https://openalex.org/keywords/metabolome","display_name":"Metabolome","score":0.6781920790672302},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6765578985214233},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5998949408531189},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.41383546590805054},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.4035317301750183},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.29596585035324097}],"concepts":[{"id":"https://openalex.org/C21565614","wikidata":"https://www.wikidata.org/wiki/Q12149006","display_name":"Metabolomics","level":2,"score":0.9502722024917603},{"id":"https://openalex.org/C135870905","wikidata":"https://www.wikidata.org/wiki/Q903667","display_name":"Metabolome","level":3,"score":0.6781920790672302},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6765578985214233},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5998949408531189},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.41383546590805054},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.4035317301750183},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.29596585035324097},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009682","descriptor_name":"Magnetic Resonance Spectroscopy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009682","descriptor_name":"Magnetic Resonance Spectroscopy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009682","descriptor_name":"Magnetic Resonance Spectroscopy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055442","descriptor_name":"Metabolome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055442","descriptor_name":"Metabolome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055442","descriptor_name":"Metabolome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbv077","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbv077","pdf_url":"https://academic.oup.com/bib/article-pdf/17/3/541/6689382/bbv077.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26342127","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26342127","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":"Journal Article"},{"id":"pmh:oai:open-archive.highwire.org:bib:17/3/541","is_oa":false,"landing_page_url":"http://bib.oxfordjournals.org/cgi/content/short/17/3/541","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/bib/bbv077","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbv077","pdf_url":"https://academic.oup.com/bib/article-pdf/17/3/541/6689382/bbv077.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321837","display_name":"Ministerio de Econom\u00eda y Competitividad","ror":"https://ror.org/034900433"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W2274788302.pdf"},"referenced_works_count":105,"referenced_works":["https://openalex.org/W111088727","https://openalex.org/W168966497","https://openalex.org/W178751245","https://openalex.org/W644895208","https://openalex.org/W657879507","https://openalex.org/W1482401268","https://openalex.org/W1578104218","https://openalex.org/W1592368639","https://openalex.org/W1736417332","https://openalex.org/W1966017460","https://openalex.org/W1967708087","https://openalex.org/W1969082909","https://openalex.org/W1970630674","https://openalex.org/W1975948012","https://openalex.org/W1976327004","https://openalex.org/W1992360682","https://openalex.org/W1992483596","https://openalex.org/W2006617902","https://openalex.org/W2009033874","https://openalex.org/W2010472688","https://openalex.org/W2016949610","https://openalex.org/W2027878425","https://openalex.org/W2030179947","https://openalex.org/W2035715038","https://openalex.org/W2035833657","https://openalex.org/W2036491364","https://openalex.org/W2043194724","https://openalex.org/W2043466579","https://openalex.org/W2045074061","https://openalex.org/W2047346998","https://openalex.org/W2048684164","https://openalex.org/W2049260537","https://openalex.org/W2049989995","https://openalex.org/W2051366884","https://openalex.org/W2052311868","https://openalex.org/W2054953567","https://openalex.org/W2055256526","https://openalex.org/W2058610693","https://openalex.org/W2061156796","https://openalex.org/W2063028213","https://openalex.org/W2067542637","https://openalex.org/W2069423534","https://openalex.org/W2072266823","https://openalex.org/W2073039202","https://openalex.org/W2073503722","https://openalex.org/W2075531085","https://openalex.org/W2075715210","https://openalex.org/W2077055938","https://openalex.org/W2079529928","https://openalex.org/W2079733567","https://openalex.org/W2081160245","https://openalex.org/W2081712640","https://openalex.org/W2083637865","https://openalex.org/W2087481249","https://openalex.org/W2088944177","https://openalex.org/W2088946080","https://openalex.org/W2089210920","https://openalex.org/W2090219260","https://openalex.org/W2092061636","https://openalex.org/W2094229819","https://openalex.org/W2096097232","https://openalex.org/W2097571405","https://openalex.org/W2099451866","https://openalex.org/W2100463095","https://openalex.org/W2100896540","https://openalex.org/W2102990700","https://openalex.org/W2104132854","https://openalex.org/W2106894726","https://openalex.org/W2108488321","https://openalex.org/W2109788341","https://openalex.org/W2111054661","https://openalex.org/W2113381588","https://openalex.org/W2115425267","https://openalex.org/W2118306023","https://openalex.org/W2120865735","https://openalex.org/W2123055140","https://openalex.org/W2124911115","https://openalex.org/W2125056473","https://openalex.org/W2126353611","https://openalex.org/W2135842485","https://openalex.org/W2136332525","https://openalex.org/W2136780652","https://openalex.org/W2137369667","https://openalex.org/W2139556852","https://openalex.org/W2140207977","https://openalex.org/W2141224543","https://openalex.org/W2145126338","https://openalex.org/W2145265944","https://openalex.org/W2146488171","https://openalex.org/W2147758888","https://openalex.org/W2150420891","https://openalex.org/W2151444028","https://openalex.org/W2155363555","https://openalex.org/W2157997018","https://openalex.org/W2160317546","https://openalex.org/W2164226794","https://openalex.org/W2166764401","https://openalex.org/W2167540852","https://openalex.org/W2169353806","https://openalex.org/W2169821755","https://openalex.org/W2171648492","https://openalex.org/W2321040821","https://openalex.org/W2331951098","https://openalex.org/W3105630349","https://openalex.org/W6652940507"],"related_works":["https://openalex.org/W1996644818","https://openalex.org/W1965468642","https://openalex.org/W2093500216","https://openalex.org/W2053588008","https://openalex.org/W2916376502","https://openalex.org/W2260452057","https://openalex.org/W3101161779","https://openalex.org/W423371831","https://openalex.org/W2777729175","https://openalex.org/W4295779760"],"abstract_inverted_index":{"Metabolomics,":[0],"a":[1,14,157],"systems":[2],"biology":[3],"approach":[4,92],"focused":[5],"on":[6,111,159],"the":[7,11,18,34,40,65,86,94,102,106,112,117,127,130,133,137,144,149,160],"global":[8],"study":[9,131],"of":[10,20,29,36,75,85,96,105,120,129,136,153,162],"metabolome,":[12],"offers":[13,39],"tremendous":[15],"potential":[16],"in":[17,33,116],"analysis":[19],"clinical":[21,123],"samples.":[22],"Among":[23],"other":[24],"applications,":[25,124],"metabolomics":[26,58,118],"enables":[27],"mapping":[28],"biochemical":[30],"alterations":[31],"involved":[32,115],"pathogenesis":[35],"diseases,":[37],"and":[38,47,70,98,151],"opportunity":[41],"to":[42,67,132,143],"noninvasively":[43],"identify":[44],"diagnostic,":[45],"prognostic":[46],"predictive":[48],"biomarkers":[49],"that":[50],"could":[51],"translate":[52],"into":[53],"early":[54],"therapeutic":[55],"interventions.":[56],"Particularly,":[57],"by":[59],"Nuclear":[60],"Magnetic":[61],"Resonance":[62],"(NMR)":[63],"has":[64],"ability":[66],"simultaneously":[68],"detect":[69],"structurally":[71],"characterize":[72],"an":[73],"abundance":[74],"metabolic":[76],"components,":[77],"even":[78],"when":[79],"their":[80],"identities":[81],"are":[82],"unknown.":[83],"Analysis":[84],"data":[87,155],"generated":[88],"using":[89],"this":[90],"experimental":[91],"requires":[93],"application":[95],"statistical":[97],"bioinformatics":[99],"tools":[100],"for":[101,122,148],"correct":[103],"interpretation":[104,135,152],"results.":[107,138],"This":[108],"review":[109],"focuses":[110],"different":[113],"steps":[114],"characterization":[119],"biofluids":[121],"ranging":[125],"from":[126],"design":[128],"biological":[134],"Particular":[139],"emphasis":[140],"is":[141],"devoted":[142],"specific":[145],"procedures":[146],"required":[147],"processing":[150],"NMR":[154],"with":[156],"focus":[158],"identification":[161],"clinically":[163],"relevant":[164],"biomarkers.":[165]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":4}],"updated_date":"2026-08-26T07:47:46.906454","created_date":"2025-10-10T00:00:00"}
