{"id":"https://openalex.org/W2259538443","doi":"https://doi.org/10.1093/bib/bbv066","title":"Drug\u2013target interaction prediction: databases, web servers and computational models","display_name":"Drug\u2013target interaction prediction: databases, web servers and computational models","publication_year":2015,"publication_date":"2015-08-17","ids":{"openalex":"https://openalex.org/W2259538443","doi":"https://doi.org/10.1093/bib/bbv066","mag":"2259538443","pmid":"https://pubmed.ncbi.nlm.nih.gov/26283676"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbv066","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbv066","pdf_url":"https://academic.oup.com/bib/article-pdf/17/4/696/6685810/bbv066.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/17/4/696/6685810/bbv066.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100371774","display_name":"Xing Chen","orcid":"https://orcid.org/0000-0001-9641-3528"},"institutions":[{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210090176","display_name":"Institute of Computing Technology","ror":"https://ror.org/0090r4d87","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210090176"]},{"id":"https://openalex.org/I4210095018","display_name":"National Center for Mathematics and Interdisciplinary Sciences","ror":"https://ror.org/00s97k668","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210095018"]},{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xing Chen","raw_affiliation_strings":["Xing Chen, PhD, is an assistant research fellow of the National Center for Mathematics and Interdisciplinary Sciences, Chinese Academy of Sciences. His research interests include network pharmacology, disease and non-coding RNAs and machine learning","Department of Automation, Tsinghua University","Department of Computer, Shandong University","Institute of Computing Technology, Chinese Academy of Sciences","National Center for Mathematics and Interdisciplinary Sciences, Chinese Academy of Sciences, Zhongguancun East Road, Haidian District, Beijing 100190, China","National Center for Mathematics and Interdisciplinary Sciences, Chinese Academy of Sciences","School of Mechanical, Electrical & Information Engineering, Shandong University","fellow of the Institute of Computing Technology, Chinese Academy of Sciences"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Xing Chen, PhD, is an assistant research fellow of the National Center for Mathematics and Interdisciplinary Sciences, Chinese Academy of Sciences. His research interests include network pharmacology, disease and non-coding RNAs and machine learning","institution_ids":["https://openalex.org/I4210095018"]},{"raw_affiliation_string":"Department of Automation, Tsinghua University","institution_ids":["https://openalex.org/I99065089"]},{"raw_affiliation_string":"Department of Computer, Shandong University","institution_ids":["https://openalex.org/I154099455"]},{"raw_affiliation_string":"Institute of Computing Technology, Chinese Academy of Sciences","institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210090176"]},{"raw_affiliation_string":"National Center for Mathematics and Interdisciplinary Sciences, Chinese Academy of Sciences, Zhongguancun East Road, Haidian District, Beijing 100190, China","institution_ids":["https://openalex.org/I4210095018"]},{"raw_affiliation_string":"National Center for Mathematics and Interdisciplinary Sciences, Chinese Academy of Sciences","institution_ids":["https://openalex.org/I4210095018"]},{"raw_affiliation_string":"School of Mechanical, Electrical & Information Engineering, Shandong University","institution_ids":["https://openalex.org/I154099455"]},{"raw_affiliation_string":"fellow of the Institute of Computing Technology, Chinese Academy of Sciences","institution_ids":["https://openalex.org/I4210090176"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054311881","display_name":"Chenggang Yan","orcid":"https://orcid.org/0000-0003-1204-0512"},"institutions":[{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chenggang Clarence Yan","raw_affiliation_strings":["Chenggang Clarence Yan, PhD, is an assistant research fellow of the Department of Automation, Tsinghua University. His research interests include network pharmacology, parallel computing, video coding and image processing"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chenggang Clarence Yan, PhD, is an assistant research fellow of the Department of Automation, Tsinghua University. His research interests include network pharmacology, parallel computing, video coding and image processing","institution_ids":["https://openalex.org/I99065089"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037657152","display_name":"Xiaotian Zhang","orcid":"https://orcid.org/0000-0002-9533-4761"},"institutions":[{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210089348","display_name":"Data Archiving and Networked Services (DANS)","ror":"https://ror.org/008pnp284","country_code":"NL","type":"facility","lineage":["https://openalex.org/I1322597698","https://openalex.org/I2800991832","https://openalex.org/I4210089348"]},{"id":"https://openalex.org/I4210090176","display_name":"Institute of Computing Technology","ror":"https://ror.org/0090r4d87","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210090176"]},{"id":"https://openalex.org/I4210095018","display_name":"National Center for Mathematics and Interdisciplinary Sciences","ror":"https://ror.org/00s97k668","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210095018"]},{"id":"https://openalex.org/I4210154338","display_name":"Hubei Engineering University","ror":"https://ror.org/05amnwk22","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210154338"]},{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN","NL"],"is_corresponding":false,"raw_author_name":"Xiaotian Zhang","raw_affiliation_strings":["Xiaotian Zhang is a student of the School of Mechanical, Electrical & Information Engineering, Shandong University. Her research interests include network pharmacology, disease and non-coding RNAs and machine learning","Xu Zhang is a student of the School of Mechanical, Electrical & Information Engineering, Shandong University. Her research interests include network pharmacology, disease and non-coding RNAs and machine learning","Department of Automation, Tsinghua University","Department of Computer, Shandong University","Institute of Computing Technology, Chinese Academy of Sciences","National Center for Mathematics and Interdisciplinary Sciences, Chinese Academy of Sciences, Zhongguancun East Road, Haidian District, Beijing 100190, China","National Center for Mathematics and Interdisciplinary Sciences, Chinese Academy of Sciences","School of Mechanical, Electrical & Information Engineering, Shandong University","fellow of the Institute of Computing Technology, Chinese Academy of Sciences"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Xiaotian Zhang is a student of the School of Mechanical, Electrical & Information Engineering, Shandong University. Her research interests include network pharmacology, disease and non-coding RNAs and machine learning","institution_ids":["https://openalex.org/I4210154338"]},{"raw_affiliation_string":"Xu Zhang is a student of the School of Mechanical, Electrical & Information Engineering, Shandong University. Her research interests include network pharmacology, disease and non-coding RNAs and machine learning","institution_ids":["https://openalex.org/I4210089348"]},{"raw_affiliation_string":"Department of Automation, Tsinghua University","institution_ids":["https://openalex.org/I99065089"]},{"raw_affiliation_string":"Department of Computer, Shandong University","institution_ids":["https://openalex.org/I154099455"]},{"raw_affiliation_string":"Institute of Computing Technology, Chinese Academy of Sciences","institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210090176"]},{"raw_affiliation_string":"National Center for Mathematics and Interdisciplinary Sciences, Chinese Academy of Sciences, Zhongguancun East Road, Haidian District, Beijing 100190, China","institution_ids":["https://openalex.org/I4210095018"]},{"raw_affiliation_string":"National Center for Mathematics and Interdisciplinary Sciences, Chinese Academy of Sciences","institution_ids":["https://openalex.org/I4210095018"]},{"raw_affiliation_string":"School of Mechanical, Electrical & Information Engineering, Shandong University","institution_ids":["https://openalex.org/I154099455"]},{"raw_affiliation_string":"fellow of the Institute of Computing Technology, Chinese Academy of Sciences","institution_ids":["https://openalex.org/I4210090176"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100437220","display_name":"Xu Zhang","orcid":"https://orcid.org/0000-0002-3313-5070"},"institutions":[{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210089348","display_name":"Data Archiving and Networked Services (DANS)","ror":"https://ror.org/008pnp284","country_code":"NL","type":"facility","lineage":["https://openalex.org/I1322597698","https://openalex.org/I2800991832","https://openalex.org/I4210089348"]},{"id":"https://openalex.org/I4210090176","display_name":"Institute of Computing Technology","ror":"https://ror.org/0090r4d87","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210090176"]},{"id":"https://openalex.org/I4210095018","display_name":"National Center for Mathematics and Interdisciplinary Sciences","ror":"https://ror.org/00s97k668","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210095018"]},{"id":"https://openalex.org/I4210154338","display_name":"Hubei Engineering University","ror":"https://ror.org/05amnwk22","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210154338"]},{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN","NL"],"is_corresponding":false,"raw_author_name":"Xu Zhang","raw_affiliation_strings":["Xiaotian Zhang is a student of the School of Mechanical, Electrical & Information Engineering, Shandong University. Her research interests include network pharmacology, disease and non-coding RNAs and machine learning","Xu Zhang is a student of the School of Mechanical, Electrical & Information Engineering, Shandong University. Her research interests include network pharmacology, disease and non-coding RNAs and machine learning","Department of Automation, Tsinghua University","Department of Computer, Shandong University","Institute of Computing Technology, Chinese Academy of Sciences","National Center for Mathematics and Interdisciplinary Sciences, Chinese Academy of Sciences, Zhongguancun East Road, Haidian District, Beijing 100190, China","National Center for Mathematics and Interdisciplinary Sciences, Chinese Academy of Sciences","School of Mechanical, Electrical & Information Engineering, Shandong University","fellow of the Institute of Computing Technology, Chinese Academy of Sciences"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Xiaotian Zhang is a student of the School of Mechanical, Electrical & Information Engineering, Shandong University. Her research interests include network pharmacology, disease and non-coding RNAs and machine learning","institution_ids":["https://openalex.org/I4210154338"]},{"raw_affiliation_string":"Xu Zhang is a student of the School of Mechanical, Electrical & Information Engineering, Shandong University. Her research interests include network pharmacology, disease and non-coding RNAs and machine learning","institution_ids":["https://openalex.org/I4210089348"]},{"raw_affiliation_string":"Department of Automation, Tsinghua University","institution_ids":["https://openalex.org/I99065089"]},{"raw_affiliation_string":"Department of Computer, Shandong University","institution_ids":["https://openalex.org/I154099455"]},{"raw_affiliation_string":"Institute of Computing Technology, Chinese Academy of Sciences","institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210090176"]},{"raw_affiliation_string":"National Center for Mathematics and Interdisciplinary Sciences, Chinese Academy of Sciences, Zhongguancun East Road, Haidian District, Beijing 100190, China","institution_ids":["https://openalex.org/I4210095018"]},{"raw_affiliation_string":"National Center for Mathematics and Interdisciplinary Sciences, Chinese Academy of Sciences","institution_ids":["https://openalex.org/I4210095018"]},{"raw_affiliation_string":"School of Mechanical, Electrical & Information Engineering, Shandong University","institution_ids":["https://openalex.org/I154099455"]},{"raw_affiliation_string":"fellow of the Institute of Computing Technology, Chinese Academy of Sciences","institution_ids":["https://openalex.org/I4210090176"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103354467","display_name":"Feng Dai","orcid":null},"institutions":[{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210090176","display_name":"Institute of Computing Technology","ror":"https://ror.org/0090r4d87","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210090176"]},{"id":"https://openalex.org/I4210095018","display_name":"National Center for Mathematics and Interdisciplinary Sciences","ror":"https://ror.org/00s97k668","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210095018"]},{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Feng Dai","raw_affiliation_strings":["Feng Dai, PhD, is an associate research fellow of the Institute of Computing Technology, Chinese Academy of Sciences. His research interests include network pharmacology, video coding and parallel computing","Department of Automation, Tsinghua University","Department of Computer, Shandong University","Institute of Computing Technology, Chinese Academy of Sciences","National Center for Mathematics and Interdisciplinary Sciences, Chinese Academy of Sciences, Zhongguancun East Road, Haidian District, Beijing 100190, China","National Center for Mathematics and Interdisciplinary Sciences, Chinese Academy of Sciences","School of Mechanical, Electrical & Information Engineering, Shandong University","fellow of the Institute of Computing Technology, Chinese Academy of Sciences"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Feng Dai, PhD, is an associate research fellow of the Institute of Computing Technology, Chinese Academy of Sciences. His research interests include network pharmacology, video coding and parallel computing","institution_ids":["https://openalex.org/I4210090176"]},{"raw_affiliation_string":"Department of Automation, Tsinghua University","institution_ids":["https://openalex.org/I99065089"]},{"raw_affiliation_string":"Department of Computer, Shandong University","institution_ids":["https://openalex.org/I154099455"]},{"raw_affiliation_string":"Institute of Computing Technology, Chinese Academy of Sciences","institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210090176"]},{"raw_affiliation_string":"National Center for Mathematics and Interdisciplinary Sciences, Chinese Academy of Sciences, Zhongguancun East Road, Haidian District, Beijing 100190, China","institution_ids":["https://openalex.org/I4210095018"]},{"raw_affiliation_string":"National Center for Mathematics and Interdisciplinary Sciences, Chinese Academy of Sciences","institution_ids":["https://openalex.org/I4210095018"]},{"raw_affiliation_string":"School of Mechanical, Electrical & Information Engineering, Shandong University","institution_ids":["https://openalex.org/I154099455"]},{"raw_affiliation_string":"fellow of the Institute of Computing Technology, Chinese Academy of Sciences","institution_ids":["https://openalex.org/I4210090176"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101847664","display_name":"Jian Yin","orcid":"https://orcid.org/0000-0001-7832-7482"},"institutions":[{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210090176","display_name":"Institute of Computing Technology","ror":"https://ror.org/0090r4d87","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210090176"]},{"id":"https://openalex.org/I4210095018","display_name":"National Center for Mathematics and Interdisciplinary Sciences","ror":"https://ror.org/00s97k668","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210095018"]},{"id":"https://openalex.org/I4210131745","display_name":"Parallel Consulting (United States)","ror":"https://ror.org/03cssbw37","country_code":"US","type":"company","lineage":["https://openalex.org/I4210131745"]},{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Jian Yin","raw_affiliation_strings":["Jian Yin, PhD, is an associate professor of the Department of Computer, Shandong University. His research interests include network pharmacology, parallel computing and image processing","Department of Automation, Tsinghua University","Department of Computer, Shandong University","Institute of Computing Technology, Chinese Academy of Sciences","National Center for Mathematics and Interdisciplinary Sciences, Chinese Academy of Sciences, Zhongguancun East Road, Haidian District, Beijing 100190, China","National Center for Mathematics and Interdisciplinary Sciences, Chinese Academy of Sciences","School of Mechanical, Electrical & Information Engineering, Shandong University","fellow of the Institute of Computing Technology, Chinese Academy of Sciences"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Jian Yin, PhD, is an associate professor of the Department of Computer, Shandong University. His research interests include network pharmacology, parallel computing and image processing","institution_ids":["https://openalex.org/I4210131745"]},{"raw_affiliation_string":"Department of Automation, Tsinghua University","institution_ids":["https://openalex.org/I99065089"]},{"raw_affiliation_string":"Department of Computer, Shandong University","institution_ids":["https://openalex.org/I154099455"]},{"raw_affiliation_string":"Institute of Computing Technology, Chinese Academy of Sciences","institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210090176"]},{"raw_affiliation_string":"National Center for Mathematics and Interdisciplinary Sciences, Chinese Academy of Sciences, Zhongguancun East Road, Haidian District, Beijing 100190, China","institution_ids":["https://openalex.org/I4210095018"]},{"raw_affiliation_string":"National Center for Mathematics and Interdisciplinary Sciences, Chinese Academy of Sciences","institution_ids":["https://openalex.org/I4210095018"]},{"raw_affiliation_string":"School of Mechanical, Electrical & Information Engineering, Shandong University","institution_ids":["https://openalex.org/I154099455"]},{"raw_affiliation_string":"fellow of the Institute of Computing Technology, Chinese Academy of Sciences","institution_ids":["https://openalex.org/I4210090176"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5046305086","display_name":"Yongdong Zhang","orcid":"https://orcid.org/0000-0002-1151-1792"},"institutions":[{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210090176","display_name":"Institute of Computing Technology","ror":"https://ror.org/0090r4d87","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210090176"]},{"id":"https://openalex.org/I4210095018","display_name":"National Center for Mathematics and Interdisciplinary Sciences","ror":"https://ror.org/00s97k668","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210095018"]},{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yongdong Zhang","raw_affiliation_strings":["Yongdong Zhang, PhD, is a research fellow of the Institute of Computing Technology, Chinese Academy of Sciences. His research interests include network pharmacology, video coding, parallel computing and image processing","Department of Automation, Tsinghua University","Department of Computer, Shandong University","Institute of Computing Technology, Chinese Academy of Sciences","National Center for Mathematics and Interdisciplinary Sciences, Chinese Academy of Sciences, Zhongguancun East Road, Haidian District, Beijing 100190, China","National Center for Mathematics and Interdisciplinary Sciences, Chinese Academy of Sciences","School of Mechanical, Electrical & Information Engineering, Shandong University","fellow of the Institute of Computing Technology, Chinese Academy of Sciences"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Yongdong Zhang, PhD, is a research fellow of the Institute of Computing Technology, Chinese Academy of Sciences. His research interests include network pharmacology, video coding, parallel computing and image processing","institution_ids":["https://openalex.org/I4210090176"]},{"raw_affiliation_string":"Department of Automation, Tsinghua University","institution_ids":["https://openalex.org/I99065089"]},{"raw_affiliation_string":"Department of Computer, Shandong University","institution_ids":["https://openalex.org/I154099455"]},{"raw_affiliation_string":"Institute of Computing Technology, Chinese Academy of Sciences","institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210090176"]},{"raw_affiliation_string":"National Center for Mathematics and Interdisciplinary Sciences, Chinese Academy of Sciences, Zhongguancun East Road, Haidian District, Beijing 100190, China","institution_ids":["https://openalex.org/I4210095018"]},{"raw_affiliation_string":"National Center for Mathematics and Interdisciplinary Sciences, Chinese Academy of Sciences","institution_ids":["https://openalex.org/I4210095018"]},{"raw_affiliation_string":"School of Mechanical, Electrical & Information Engineering, Shandong University","institution_ids":["https://openalex.org/I154099455"]},{"raw_affiliation_string":"fellow of the Institute of Computing Technology, Chinese Academy of Sciences","institution_ids":["https://openalex.org/I4210090176"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5100371774"],"corresponding_institution_ids":["https://openalex.org/I154099455","https://openalex.org/I19820366","https://openalex.org/I4210090176","https://openalex.org/I4210095018","https://openalex.org/I99065089"],"apc_list":{"value":3885,"currency":"USD","value_usd":3885},"apc_paid":null,"fwci":41.1406,"has_fulltext":true,"cited_by_count":678,"citation_normalized_percentile":{"value":0.99857154,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"17","issue":"4","first_page":"696","last_page":"712"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9932000041007996,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10375","display_name":"Pharmacogenetics and Drug Metabolism","score":0.982200026512146,"subfield":{"id":"https://openalex.org/subfields/3004","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/30","display_name":"Pharmacology, Toxicology and Pharmaceutics"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7520415186882019},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.6972041726112366},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6920967698097229},{"id":"https://openalex.org/keywords/drug-target","display_name":"Drug target","score":0.6463875770568848},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.6439691185951233},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.6002771258354187},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5280319452285767},{"id":"https://openalex.org/keywords/computational-model","display_name":"Computational model","score":0.5173765420913696},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.4697461724281311},{"id":"https://openalex.org/keywords/interaction-network","display_name":"Interaction network","score":0.45005983114242554},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3621378540992737},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.21539553999900818},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.20932257175445557}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7520415186882019},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.6972041726112366},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6920967698097229},{"id":"https://openalex.org/C2989108626","wikidata":"https://www.wikidata.org/wiki/Q904407","display_name":"Drug target","level":2,"score":0.6463875770568848},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.6439691185951233},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.6002771258354187},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5280319452285767},{"id":"https://openalex.org/C66024118","wikidata":"https://www.wikidata.org/wiki/Q1122506","display_name":"Computational model","level":2,"score":0.5173765420913696},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.4697461724281311},{"id":"https://openalex.org/C55105296","wikidata":"https://www.wikidata.org/wiki/Q841382","display_name":"Interaction network","level":3,"score":0.45005983114242554},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3621378540992737},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.21539553999900818},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.20932257175445557},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.0},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016503","descriptor_name":"Drug Delivery Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016503","descriptor_name":"Drug Delivery Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016503","descriptor_name":"Drug Delivery Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbv066","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbv066","pdf_url":"https://academic.oup.com/bib/article-pdf/17/4/696/6685810/bbv066.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26283676","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26283676","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":"Journal Article"},{"id":"pmh:oai:open-archive.highwire.org:bib:17/4/696","is_oa":false,"landing_page_url":"http://bib.oxfordjournals.org/cgi/content/short/17/4/696","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/bib/bbv066","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbv066","pdf_url":"https://academic.oup.com/bib/article-pdf/17/4/696/6685810/bbv066.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4399999976158142,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320323110","display_name":"Beijing Institute of Technology","ror":"https://ror.org/01skt4w74"},{"id":"https://openalex.org/F4320336876","display_name":"National Center for Mathematics and Interdisciplinary Sciences, Chinese Academy of Sciences","ror":"https://ror.org/00s97k668"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2259538443.pdf","grobid_xml":"https://content.openalex.org/works/W2259538443.grobid-xml"},"referenced_works_count":93,"referenced_works":["https://openalex.org/W1466286227","https://openalex.org/W1540649941","https://openalex.org/W1541232310","https://openalex.org/W1813117265","https://openalex.org/W1895993106","https://openalex.org/W1966751442","https://openalex.org/W1967032556","https://openalex.org/W1968682237","https://openalex.org/W1971106435","https://openalex.org/W1971387816","https://openalex.org/W1971825415","https://openalex.org/W1974884542","https://openalex.org/W1975426150","https://openalex.org/W1978370150","https://openalex.org/W1979537657","https://openalex.org/W1984084871","https://openalex.org/W1995089537","https://openalex.org/W1995905328","https://openalex.org/W1997813612","https://openalex.org/W2002221644","https://openalex.org/W2004364785","https://openalex.org/W2008840001","https://openalex.org/W2010750139","https://openalex.org/W2015393683","https://openalex.org/W2015604457","https://openalex.org/W2018408116","https://openalex.org/W2018518196","https://openalex.org/W2027482274","https://openalex.org/W2029152175","https://openalex.org/W2029197596","https://openalex.org/W2033591223","https://openalex.org/W2035753075","https://openalex.org/W2042933379","https://openalex.org/W2044002635","https://openalex.org/W2044424923","https://openalex.org/W2048565304","https://openalex.org/W2057635677","https://openalex.org/W2060145168","https://openalex.org/W2062941476","https://openalex.org/W2064264167","https://openalex.org/W2066201825","https://openalex.org/W2068351024","https://openalex.org/W2069898171","https://openalex.org/W2070171305","https://openalex.org/W2074370114","https://openalex.org/W2080770317","https://openalex.org/W2085034490","https://openalex.org/W2086286404","https://openalex.org/W2087064593","https://openalex.org/W2096021562","https://openalex.org/W2096525273","https://openalex.org/W2096541451","https://openalex.org/W2096864392","https://openalex.org/W2099754222","https://openalex.org/W2100811683","https://openalex.org/W2105668062","https://openalex.org/W2108069034","https://openalex.org/W2109991441","https://openalex.org/W2112189758","https://openalex.org/W2113951828","https://openalex.org/W2126671570","https://openalex.org/W2128137143","https://openalex.org/W2128966273","https://openalex.org/W2131773109","https://openalex.org/W2138427043","https://openalex.org/W2138512826","https://openalex.org/W2139516171","https://openalex.org/W2139736926","https://openalex.org/W2140595402","https://openalex.org/W2142572836","https://openalex.org/W2144563439","https://openalex.org/W2152970345","https://openalex.org/W2153838454","https://openalex.org/W2154896031","https://openalex.org/W2156012049","https://openalex.org/W2160203886","https://openalex.org/W2161607603","https://openalex.org/W2165188181","https://openalex.org/W2165240999","https://openalex.org/W2165674132","https://openalex.org/W2166550586","https://openalex.org/W2167212630","https://openalex.org/W2168938595","https://openalex.org/W2169815691","https://openalex.org/W2171482501","https://openalex.org/W2335298376","https://openalex.org/W2412949524","https://openalex.org/W3101634756","https://openalex.org/W4232866872","https://openalex.org/W4244606935","https://openalex.org/W4245543257","https://openalex.org/W6703115218","https://openalex.org/W6715547131"],"related_works":["https://openalex.org/W2509838516","https://openalex.org/W1971106435","https://openalex.org/W2623587811","https://openalex.org/W2343879804","https://openalex.org/W2008235780","https://openalex.org/W2148679377","https://openalex.org/W2133776184","https://openalex.org/W2177411254","https://openalex.org/W1598853836","https://openalex.org/W2106029302"],"abstract_inverted_index":{"Identification":[0],"of":[1,113,147,183],"drug-target":[2,24,47,62,79,120,184],"interactions":[3,80,185],"is":[4],"an":[5],"important":[6],"process":[7],"in":[8,61,110],"drug":[9,65,150,157],"discovery.":[10],"Although":[11,116],"high-throughput":[12],"screening":[13],"and":[14,33,57,64,88,103,133,152,168,180],"other":[15],"biological":[16],"assays":[17],"are":[18,67],"becoming":[19],"available,":[20],"experimental":[21],"methods":[22,136],"for":[23,78,92,119,155],"interaction":[25,121],"identification":[26,63],"remain":[27],"to":[28,44,101],"be":[29],"extremely":[30],"costly,":[31],"time-consuming":[32],"challenging":[34],"even":[35],"nowadays.":[36],"Therefore,":[37],"various":[38],"computational":[39,76,129],"models":[40,77],"have":[41,107,123,137],"been":[42,124],"developed":[43],"predict":[45],"potential":[46],"associations":[48],"on":[49,160,194],"a":[50],"large":[51],"scale.":[52],"In":[53,69],"this":[54],"review,":[55],"databases":[56],"web":[58],"servers":[59],"involved":[60],"discovery":[66,151,158],"summarized.":[68],"addition,":[70],"we":[71,142,173],"mainly":[72],"introduced":[73],"some":[74],"state-of-the-art":[75],"prediction,":[81],"including":[82],"network-based":[83,132,149],"method,":[84,96],"machine":[85,94,134],"learning-based":[86,95,135],"method":[87],"so":[89],"on.":[90],"Specially,":[91],"the":[93,111,144,148,175,181],"much":[97],"attention":[98],"was":[99],"paid":[100],"supervised":[102],"semi-supervised":[104],"models,":[105,130],"which":[106],"essential":[108],"difference":[109],"adoption":[112],"negative":[114],"samples.":[115],"significant":[117],"improvements":[118],"prediction":[122,186],"obtained":[125],"by":[126,188],"many":[127],"effective":[128],"both":[131],"their":[138],"disadvantages,":[139],"respectively.":[140],"Furthermore,":[141],"discuss":[143],"future":[145],"directions":[146],"network":[153,167],"approach":[154],"personalized":[156,161],"based":[159,193],"medicine,":[162],"genome":[163],"sequencing,":[164],"tumor":[165],"clone-based":[166],"cancer":[169],"hallmark-based":[170],"network.":[171],"Finally,":[172],"discussed":[174],"new":[176],"evaluation":[177],"validation":[178],"framework":[179],"formulation":[182,192],"problem":[187],"more":[189],"realistic":[190],"regression":[191],"quantitative":[195],"bioactivity":[196],"data.":[197]},"counts_by_year":[{"year":2026,"cited_by_count":26},{"year":2025,"cited_by_count":71},{"year":2024,"cited_by_count":74},{"year":2023,"cited_by_count":69},{"year":2022,"cited_by_count":86},{"year":2021,"cited_by_count":71},{"year":2020,"cited_by_count":82},{"year":2019,"cited_by_count":78},{"year":2018,"cited_by_count":62},{"year":2017,"cited_by_count":43},{"year":2016,"cited_by_count":16}],"updated_date":"2026-08-26T07:47:46.906454","created_date":"2025-10-10T00:00:00"}
