{"id":"https://openalex.org/W1958105284","doi":"https://doi.org/10.1093/bib/bbv063","title":"Reasoning over genetic variance information in cause-and-effect models of neurodegenerative diseases","display_name":"Reasoning over genetic variance information in cause-and-effect models of neurodegenerative diseases","publication_year":2015,"publication_date":"2015-08-05","ids":{"openalex":"https://openalex.org/W1958105284","doi":"https://doi.org/10.1093/bib/bbv063","mag":"1958105284","pmid":"https://pubmed.ncbi.nlm.nih.gov/26249223"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbv063","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbv063","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.1093/bib/bbv063","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5004619182","display_name":"Mufassra Naz","orcid":null},"institutions":[{"id":"https://openalex.org/I4210098248","display_name":"Fraunhofer Institute for Algorithms and Scientific Computing","ror":"https://ror.org/00trw9c49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210098248","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Mufassra Naz","raw_affiliation_strings":["Mufassra Naz is a researcher at Fraunhofer SCAI and PhD student at the University of Bonn. Her main research interests are functional interpretation of genetic variants, causal algorithms and neurodegenerative diseases","Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), 53754 Sankt Augustin, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Mufassra Naz is a researcher at Fraunhofer SCAI and PhD student at the University of Bonn. Her main research interests are functional interpretation of genetic variants, causal algorithms and neurodegenerative diseases","institution_ids":["https://openalex.org/I4210098248"]},{"raw_affiliation_string":"Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), 53754 Sankt Augustin, Germany","institution_ids":["https://openalex.org/I4210098248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000031695","display_name":"Alpha Tom Kodamullil","orcid":"https://orcid.org/0000-0001-9896-3531"},"institutions":[{"id":"https://openalex.org/I4210098248","display_name":"Fraunhofer Institute for Algorithms and Scientific Computing","ror":"https://ror.org/00trw9c49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210098248","https://openalex.org/I4923324"]},{"id":"https://openalex.org/I4210114863","display_name":"Fraunhofer Center for Applied Research on Supply Chain Services","ror":"https://ror.org/0263r2546","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210114863","https://openalex.org/I4210124274","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Alpha Tom Kodamullil","raw_affiliation_strings":["Alpha Tom Kodamullil is a researcher at Fraunhofer SCAI and PhD student at the University of Bonn. Her research work focuses on automatic expansion of computable disease models by developing reasoners","Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), 53754 Sankt Augustin, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Alpha Tom Kodamullil is a researcher at Fraunhofer SCAI and PhD student at the University of Bonn. Her research work focuses on automatic expansion of computable disease models by developing reasoners","institution_ids":["https://openalex.org/I4210114863"]},{"raw_affiliation_string":"Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), 53754 Sankt Augustin, Germany","institution_ids":["https://openalex.org/I4210098248"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5003139478","display_name":"Martin Hofmann\u2010Apitius","orcid":"https://orcid.org/0000-0001-9012-6720"},"institutions":[{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]},{"id":"https://openalex.org/I4923324","display_name":"Fraunhofer-Gesellschaft","ror":"https://ror.org/05hkkdn48","country_code":"DE","type":"government","lineage":["https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Martin Hofmann-Apitius","raw_affiliation_strings":["Martin Hofmann-Apitius is Professor for Applied Life Science Informatics at the University of Bonn. He is also the Head of the Department of Bioinformatics at Fraunhofer Institute SCAI","Fraunhofer Society"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Martin Hofmann-Apitius is Professor for Applied Life Science Informatics at the University of Bonn. He is also the Head of the Department of Bioinformatics at Fraunhofer Institute SCAI","institution_ids":["https://openalex.org/I135140700"]},{"raw_affiliation_string":"Fraunhofer Society","institution_ids":["https://openalex.org/I4923324"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":0.8868,"has_fulltext":false,"cited_by_count":12,"citation_normalized_percentile":{"value":0.73541534,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"17","issue":"3","first_page":"505","last_page":"516"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9887999892234802,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9876000285148621,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/variance","display_name":"Variance (accounting)","score":0.6275960206985474},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.468595415353775},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.36478331685066223},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.34344303607940674},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.3281645178794861},{"id":"https://openalex.org/keywords/econometrics","display_name":"Econometrics","score":0.32331061363220215},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.23814436793327332},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.14457100629806519},{"id":"https://openalex.org/keywords/business","display_name":"Business","score":0.10238924622535706}],"concepts":[{"id":"https://openalex.org/C196083921","wikidata":"https://www.wikidata.org/wiki/Q7915758","display_name":"Variance (accounting)","level":2,"score":0.6275960206985474},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.468595415353775},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.36478331685066223},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.34344303607940674},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.3281645178794861},{"id":"https://openalex.org/C149782125","wikidata":"https://www.wikidata.org/wiki/Q160039","display_name":"Econometrics","level":1,"score":0.32331061363220215},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.23814436793327332},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.14457100629806519},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.10238924622535706},{"id":"https://openalex.org/C121955636","wikidata":"https://www.wikidata.org/wiki/Q4116214","display_name":"Accounting","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019636","descriptor_name":"Neurodegenerative Diseases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019636","descriptor_name":"Neurodegenerative Diseases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019636","descriptor_name":"Neurodegenerative Diseases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019636","descriptor_name":"Neurodegenerative Diseases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/bib/bbv063","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbv063","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26249223","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26249223","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:3846365","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4870396","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.995.3644","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.995.3644","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bib.oxfordjournals.org/content/early/2015/08/05/bib.bbv063.full.pdf","raw_type":"text"},{"id":"pmh:oai:open-archive.highwire.org:bib:17/3/505","is_oa":false,"landing_page_url":"http://bib.oxfordjournals.org/cgi/content/short/17/3/505","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:publica.fraunhofer.de:publica/243012","is_oa":false,"landing_page_url":"https://publica.fraunhofer.de/handle/publica/243012","pdf_url":null,"source":{"id":"https://openalex.org/S4306400318","display_name":"Fraunhofer-Publica (Fraunhofer-Gesellschaft)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4923324","host_organization_name":"Fraunhofer-Gesellschaft","host_organization_lineage":["https://openalex.org/I4923324"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"journal article"}],"best_oa_location":{"id":"doi:10.1093/bib/bbv063","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbv063","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3130801505","display_name":"Aetionomy \u2013 Organising Mechanistic Knowledge about Neurodegenerative Diseases for the Improvement of Drug Development and Therapy","funder_award_id":"115568","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G3829048491","display_name":null,"funder_award_id":"FP7/2007-2013","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G5593277320","display_name":null,"funder_award_id":"2007-2013","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G5702163051","display_name":null,"funder_award_id":"FP7/2007","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G6002116566","display_name":null,"funder_award_id":"115568","funder_id":"https://openalex.org/F4320314178","funder_display_name":"European Federation of Pharmaceutical Industries and Associations"},{"id":"https://openalex.org/G7364720146","display_name":null,"funder_award_id":"FP7/2007-2013","funder_id":"https://openalex.org/F4320314178","funder_display_name":"European Federation of Pharmaceutical Industries and Associations"}],"funders":[{"id":"https://openalex.org/F4320314178","display_name":"European Federation of Pharmaceutical Industries and Associations","ror":"https://ror.org/00g1x4v36"},{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":132,"referenced_works":["https://openalex.org/W973473999","https://openalex.org/W1490138151","https://openalex.org/W1529788673","https://openalex.org/W1532422242","https://openalex.org/W1544009106","https://openalex.org/W1553587640","https://openalex.org/W1658462258","https://openalex.org/W1845864398","https://openalex.org/W1964184081","https://openalex.org/W1964620644","https://openalex.org/W1965425724","https://openalex.org/W1966387099","https://openalex.org/W1970311160","https://openalex.org/W1970763339","https://openalex.org/W1971460830","https://openalex.org/W1973337266","https://openalex.org/W1977308882","https://openalex.org/W1977632740","https://openalex.org/W1982123344","https://openalex.org/W1982839620","https://openalex.org/W1989653928","https://openalex.org/W1989842786","https://openalex.org/W1991832623","https://openalex.org/W1992062845","https://openalex.org/W1993570130","https://openalex.org/W1993702356","https://openalex.org/W1994100378","https://openalex.org/W1995647101","https://openalex.org/W1998622911","https://openalex.org/W1999746344","https://openalex.org/W2002404684","https://openalex.org/W2003605043","https://openalex.org/W2006933206","https://openalex.org/W2008989169","https://openalex.org/W2009258758","https://openalex.org/W2009405916","https://openalex.org/W2011463791","https://openalex.org/W2014787267","https://openalex.org/W2019983262","https://openalex.org/W2021654829","https://openalex.org/W2022620096","https://openalex.org/W2023648355","https://openalex.org/W2023863818","https://openalex.org/W2026755238","https://openalex.org/W2032627213","https://openalex.org/W2037048830","https://openalex.org/W2041228025","https://openalex.org/W2042728642","https://openalex.org/W2042880070","https://openalex.org/W2042949617","https://openalex.org/W2044391680","https://openalex.org/W2046133662","https://openalex.org/W2046247026","https://openalex.org/W2050275568","https://openalex.org/W2051428677","https://openalex.org/W2052684082","https://openalex.org/W2057629607","https://openalex.org/W2058221907","https://openalex.org/W2059701384","https://openalex.org/W2060871034","https://openalex.org/W2062533676","https://openalex.org/W2063318299","https://openalex.org/W2064412842","https://openalex.org/W2067245109","https://openalex.org/W2069162648","https://openalex.org/W2069298307","https://openalex.org/W2069606030","https://openalex.org/W2076469310","https://openalex.org/W2082621456","https://openalex.org/W2083045667","https://openalex.org/W2083103029","https://openalex.org/W2084144722","https://openalex.org/W2084280180","https://openalex.org/W2089894746","https://openalex.org/W2092168208","https://openalex.org/W2092218431","https://openalex.org/W2094248448","https://openalex.org/W2098549100","https://openalex.org/W2100525485","https://openalex.org/W2100731712","https://openalex.org/W2101334433","https://openalex.org/W2103129584","https://openalex.org/W2104156485","https://openalex.org/W2107062718","https://openalex.org/W2107279090","https://openalex.org/W2110004994","https://openalex.org/W2112222544","https://openalex.org/W2112809329","https://openalex.org/W2112856704","https://openalex.org/W2112909517","https://openalex.org/W2113834377","https://openalex.org/W2114790542","https://openalex.org/W2115685806","https://openalex.org/W2116002414","https://openalex.org/W2116236561","https://openalex.org/W2118308505","https://openalex.org/W2119279196","https://openalex.org/W2122264952","https://openalex.org/W2122698311","https://openalex.org/W2123941817","https://openalex.org/W2124236793","https://openalex.org/W2126504590","https://openalex.org/W2127480960","https://openalex.org/W2128752324","https://openalex.org/W2131889332","https://openalex.org/W2132296608","https://openalex.org/W2133938042","https://openalex.org/W2137420185","https://openalex.org/W2140259754","https://openalex.org/W2141410747","https://openalex.org/W2144457644","https://openalex.org/W2147268537","https://openalex.org/W2147566730","https://openalex.org/W2150908245","https://openalex.org/W2152406028","https://openalex.org/W2152435464","https://openalex.org/W2152905639","https://openalex.org/W2154960776","https://openalex.org/W2159367229","https://openalex.org/W2162674813","https://openalex.org/W2165954869","https://openalex.org/W2167629040","https://openalex.org/W2175125950","https://openalex.org/W2187198735","https://openalex.org/W2234304375","https://openalex.org/W2259938310","https://openalex.org/W2334653305","https://openalex.org/W2913609543","https://openalex.org/W4295202935","https://openalex.org/W6625434250","https://openalex.org/W6631779040","https://openalex.org/W6677218535"],"related_works":["https://openalex.org/W2000663367","https://openalex.org/W2585070004","https://openalex.org/W2118155885","https://openalex.org/W2064642875","https://openalex.org/W2772917594","https://openalex.org/W4302293088","https://openalex.org/W1993155773","https://openalex.org/W4306742369","https://openalex.org/W1542160526","https://openalex.org/W3204019825"],"abstract_inverted_index":{"The":[0],"work":[1],"we":[2,36,65,147],"present":[3],"here":[4],"is":[5],"based":[6,165],"on":[7,166],"the":[8,12,15,24,76,81,93,101,132],"recent":[9],"extension":[10],"of":[11,14,26,83,104,136,174],"syntax":[13],"Biological":[16],"Expression":[17],"Language":[18],"(BEL),":[19],"which":[20],"now":[21],"allows":[22],"for":[23,155],"representation":[25],"genetic":[27,39,71,127],"variation":[28,40,128],"information":[29,41,115,181],"in":[30,50,80,149,159,182],"cause-and-effect":[31],"models.":[32,184],"In":[33,62],"our":[34,150],"article,":[35,151],"describe,":[37],"how":[38,152],"can":[42,162],"be":[43,163],"used":[44],"to":[45,67,75,100,112,142],"identify":[46],"candidate":[47,153],"disease":[48,58,161],"mechanisms":[49,154],"diseases":[51,85],"with":[52],"complex":[53],"aetiology":[54],"such":[55,87],"as":[56],"Alzheimer's":[57,160],"and":[59,129,146],"Parkinson's":[60],"disease.":[61],"those":[63],"diseases,":[64],"have":[66],"assume":[68],"that":[69,79,171,176],"many":[70],"variants":[72],"contribute":[73],"moderately":[74],"overall":[77],"dysregulation":[78,105,157],"case":[82],"neurodegenerative":[84],"has":[86,138],"a":[88],"long":[89],"incubation":[90],"time":[91],"until":[92],"first":[94],"clinical":[95],"symptoms":[96],"are":[97],"detectable.":[98],"Owing":[99],"multilevel":[102],"nature":[103],"events,":[106],"systems":[107],"biomedicine":[108],"modelling":[109],"approaches":[110],"need":[111],"combine":[113],"mechanistic":[114],"from":[116],"various":[117],"levels,":[118],"including":[119],"gene":[120],"expression,":[121,124],"microRNA":[122],"(miRNA)":[123],"protein-protein":[125],"interaction,":[126],"pathway.":[130],"OpenBEL,":[131],"open":[133],"source":[134],"version":[135],"BEL,":[137],"recently":[139],"been":[140],"extended":[141],"match":[143],"this":[144],"requirement,":[145],"demonstrate":[148],"early":[156],"events":[158],"identified":[164],"an":[167],"integrative":[168],"mining":[169],"approach":[170],"identifies":[172],"'chains":[173],"causation'":[175],"include":[177],"single":[178],"nucleotide":[179],"polymorphism":[180],"BEL":[183]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":1}],"updated_date":"2026-06-18T08:10:14.011955","created_date":"2025-10-10T00:00:00"}
