{"id":"https://openalex.org/W2266873149","doi":"https://doi.org/10.1093/bib/bbv054","title":"A very simple and fast way to access and validate algorithms in reproducible research","display_name":"A very simple and fast way to access and validate algorithms in reproducible research","publication_year":2015,"publication_date":"2015-07-28","ids":{"openalex":"https://openalex.org/W2266873149","doi":"https://doi.org/10.1093/bib/bbv054","mag":"2266873149","pmid":"https://pubmed.ncbi.nlm.nih.gov/26223526"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbv054","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbv054","pdf_url":"https://academic.oup.com/bib/article-pdf/17/1/180/6686830/bbv054.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/17/1/180/6686830/bbv054.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5091024901","display_name":"Georgina Stegmayer","orcid":"https://orcid.org/0000-0003-4459-4560"},"institutions":[{"id":"https://openalex.org/I3121987637","display_name":"Universidad Nacional del Litoral","ror":"https://ror.org/00pt8r998","country_code":"AR","type":"education","lineage":["https://openalex.org/I3121987637"]}],"countries":["AR"],"is_corresponding":false,"raw_author_name":"Georgina Stegmayer","raw_affiliation_strings":["Georgina Stegmayer is an assistant professor in the Department of Informatics at Universidad Nacional del Litoral (UNL), and researcher at the National Scientific and Technical Research Council (CONICET), Argentina. Georgina\u2019s research involves machine learning, data mining and pattern recognition in bioinformatics"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Georgina Stegmayer is an assistant professor in the Department of Informatics at Universidad Nacional del Litoral (UNL), and researcher at the National Scientific and Technical Research Council (CONICET), Argentina. Georgina\u2019s research involves machine learning, data mining and pattern recognition in bioinformatics","institution_ids":["https://openalex.org/I3121987637"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019698272","display_name":"Milton Pividori","orcid":"https://orcid.org/0000-0002-3035-4403"},"institutions":[{"id":"https://openalex.org/I4210133068","display_name":"Issues Research","ror":"https://ror.org/03j42jj36","country_code":"US","type":"other","lineage":["https://openalex.org/I4210133068"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Milton Pividori","raw_affiliation_strings":["Milton Pividori is a Ph.D. student in the Research Institute for Signals, Systems and Computational Intelligence, sinc(i), at CONICET-UNL. His research involves data mining and bioinformatics, with particular focus on consensus clustering"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Milton Pividori is a Ph.D. student in the Research Institute for Signals, Systems and Computational Intelligence, sinc(i), at CONICET-UNL. His research involves data mining and bioinformatics, with particular focus on consensus clustering","institution_ids":["https://openalex.org/I4210133068"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5077266711","display_name":"Diego H. Milone","orcid":"https://orcid.org/0000-0003-2182-4351"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Diego H. Milone","raw_affiliation_strings":["Diego Milone is full professor in the Department of Informatics at UNL and an independent research scientist at CONICET. He is Director of the sinc(i) Institute. His research interests include statistical learning, signal processing and neural and evolutionary computing, with applications to biomedical signals and bioinformatics"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Diego Milone is full professor in the Department of Informatics at UNL and an independent research scientist at CONICET. He is Director of the sinc(i) Institute. His research interests include statistical learning, signal processing and neural and evolutionary computing, with applications to biomedical signals and bioinformatics","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3885,"currency":"USD","value_usd":3885},"apc_paid":null,"fwci":8.0719,"has_fulltext":false,"cited_by_count":13,"citation_normalized_percentile":{"value":0.9711664,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":88,"max":98},"biblio":{"volume":"17","issue":"1","first_page":"180","last_page":"183"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.9916999936103821,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9878000020980835,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.868165135383606},{"id":"https://openalex.org/keywords/simple","display_name":"Simple (philosophy)","score":0.6612199544906616},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.6482354402542114},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.5908200144767761},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.53560870885849},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.5293814539909363},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.521044909954071},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.4565247595310211},{"id":"https://openalex.org/keywords/replication","display_name":"Replication (statistics)","score":0.4482989013195038},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.41724294424057007},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3428531885147095},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3389216959476471},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1243276596069336}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.868165135383606},{"id":"https://openalex.org/C2780586882","wikidata":"https://www.wikidata.org/wiki/Q7520643","display_name":"Simple (philosophy)","level":2,"score":0.6612199544906616},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.6482354402542114},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.5908200144767761},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.53560870885849},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.5293814539909363},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.521044909954071},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.4565247595310211},{"id":"https://openalex.org/C12590798","wikidata":"https://www.wikidata.org/wiki/Q3933199","display_name":"Replication (statistics)","level":2,"score":0.4482989013195038},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.41724294424057007},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3428531885147095},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3389216959476471},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1243276596069336},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.0},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/bib/bbv054","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbv054","pdf_url":"https://academic.oup.com/bib/article-pdf/17/1/180/6686830/bbv054.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26223526","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26223526","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":"Journal Article"},{"id":"pmh:oai:americanae.aecid.es:3927562","is_oa":true,"landing_page_url":"http://americanae.aecid.es/americanae/es/registros/registro.do?tipoRegistro=MTD&idBib=3927562","pdf_url":null,"source":{"id":"https://openalex.org/S4306400786","display_name":"Americanae (AECID Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-sa","license_id":"https://openalex.org/licenses/cc-by-nc-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"reponame:CONICET Digital (CONICET)","raw_type":"http://purl.org/coar/resource_type/c_6501"},{"id":"pmh:oai:open-archive.highwire.org:bib:17/1/180","is_oa":false,"landing_page_url":"http://bib.oxfordjournals.org/cgi/content/short/17/1/180","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:ri.conicet.gov.ar:11336/47055","is_oa":true,"landing_page_url":"http://hdl.handle.net/11336/47055","pdf_url":null,"source":{"id":"https://openalex.org/S4306402641","display_name":"LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Cient\u00edficas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4383465926","host_organization_name":"LA Referencia","host_organization_lineage":["https://openalex.org/I4383465926"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-sa","license_id":"https://openalex.org/licenses/cc-by-nc-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"reponame:CONICET Digital (CONICET)","raw_type":"http://purl.org/coar/resource_type/c_6501"}],"best_oa_location":{"id":"doi:10.1093/bib/bbv054","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbv054","pdf_url":"https://academic.oup.com/bib/article-pdf/17/1/180/6686830/bbv054.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2266873149.pdf"},"referenced_works_count":13,"referenced_works":["https://openalex.org/W2000515602","https://openalex.org/W2003816086","https://openalex.org/W2008985174","https://openalex.org/W2019866696","https://openalex.org/W2036318837","https://openalex.org/W2041179993","https://openalex.org/W2046766973","https://openalex.org/W2112806232","https://openalex.org/W2139210474","https://openalex.org/W2142153593","https://openalex.org/W2146437022","https://openalex.org/W4249938874","https://openalex.org/W4255382556"],"related_works":["https://openalex.org/W1585007175","https://openalex.org/W2382521049","https://openalex.org/W2144385241","https://openalex.org/W4205713785","https://openalex.org/W3016766501","https://openalex.org/W2901033488","https://openalex.org/W4253593777","https://openalex.org/W2951497643","https://openalex.org/W2165950148","https://openalex.org/W3081644756"],"abstract_inverted_index":{"The":[0,44],"reproducibility":[1],"of":[2,48,85,125],"research":[3,49,148],"in":[4,27,68,88,135],"bioinformatics":[5,89],"refers":[6],"to":[7,17,37,53,96,109,160],"the":[8,35,54,62,82,94,99,122],"notion":[9],"that":[10,30,104,115,120],"new":[11],"methodologies/algorithms":[12],"and":[13,24,46,57,90,138],"scientific":[14,55],"claims":[15],"have":[16],"be":[18],"published":[19,162],"together":[20],"with":[21,103,117,169,175],"their":[22],"data":[23],"source":[25,133],"code,":[26],"a":[28,75,118,126,136,161,177],"way":[29],"other":[31],"researchers":[32],"may":[33],"verify":[34],"findings":[36],"further":[38,97],"build":[39],"more":[40,154],"knowledge":[41],"on":[42],"them.":[43],"replication":[45],"corroboration":[47],"results":[50],"are":[51,60],"key":[52],"process,":[56],"many":[58],"journals":[59],"discussing":[61],"matter":[63],"nowadays,":[64],"taking":[65],"concrete":[66],"steps":[67],"this":[69,72,86,143],"direction.":[70],"In":[71,101],"journal":[73],"itself,":[74],"recent":[76],"opinion":[77],"note":[78],"has":[79],"appeared":[80],"highlighting":[81],"increasing":[83],"importance":[84],"topic":[87],"computational":[91],"biology,":[92],"inviting":[93],"community":[95],"discuss":[98],"matter.":[100],"agreement":[102],"article,":[105],"we":[106],"would":[107],"like":[108],"propose":[110],"here":[111],"another":[112],"step":[113],"into":[114],"direction":[116],"tool":[119],"allows":[121],"automatic":[123],"generation":[124],"web":[127],"interface,":[128],"named":[129],"web-demo,":[130],"directly":[131],"from":[132],"code":[134],"simple":[137],"straightforward":[139],"way.":[140],"We":[141],"believe":[142],"contribution":[144],"can":[145,164],"help":[146],"make":[147],"not":[149],"only":[150],"reproducible":[151],"but":[152],"also":[153],"easily":[155],"accessible.":[156],"A":[157],"web-demo":[158],"associated":[159],"paper":[163],"accelerate":[165],"an":[166],"algorithm":[167],"validation":[168],"real":[170],"data,":[171],"wide-spreading":[172],"its":[173],"use":[174],"just":[176],"few":[178],"clicks.":[179]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":1}],"updated_date":"2026-08-26T07:47:46.906454","created_date":"2025-10-10T00:00:00"}
