{"id":"https://openalex.org/W2281926395","doi":"https://doi.org/10.1093/bib/bbv051","title":"VCF-Miner: GUI-based application for mining variants and annotations stored in VCF files","display_name":"VCF-Miner: GUI-based application for mining variants and annotations stored in VCF files","publication_year":2015,"publication_date":"2015-07-25","ids":{"openalex":"https://openalex.org/W2281926395","doi":"https://doi.org/10.1093/bib/bbv051","mag":"2281926395","pmid":"https://pubmed.ncbi.nlm.nih.gov/26210358"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbv051","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbv051","pdf_url":"https://academic.oup.com/bib/article-pdf/17/2/346/6686411/bbv051.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bib/article-pdf/17/2/346/6686411/bbv051.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5085507659","display_name":"Steven N. Hart","orcid":"https://orcid.org/0000-0001-7714-2734"},"institutions":[{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723"]},{"id":"https://openalex.org/I4210146710","display_name":"Mayo Clinic in Florida","ror":"https://ror.org/03zzw1w08","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210146710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Steven N. Hart","raw_affiliation_strings":["Steven N. Hart, PhD, is an assistant professor of Biomedical Informatics at Mayo Clinic. His research interests are in analyzing large-scale genomics data to understand complex diseases","Division of Biomedical Statistics and Informatics, Department of Health Sciences Research, Mayo Clinic, 200 First Street SW, Rochester, MN 55905, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Steven N. Hart, PhD, is an assistant professor of Biomedical Informatics at Mayo Clinic. His research interests are in analyzing large-scale genomics data to understand complex diseases","institution_ids":["https://openalex.org/I4210146710"]},{"raw_affiliation_string":"Division of Biomedical Statistics and Informatics, Department of Health Sciences Research, Mayo Clinic, 200 First Street SW, Rochester, MN 55905, USA","institution_ids":["https://openalex.org/I1330342723"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035234543","display_name":"Patrick Duffy","orcid":null},"institutions":[{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723"]},{"id":"https://openalex.org/I4210148697","display_name":"Institute of Bioinformatics","ror":"https://ror.org/04hqfvm50","country_code":"IN","type":"nonprofit","lineage":["https://openalex.org/I4210148697"]}],"countries":["IN","US"],"is_corresponding":false,"raw_author_name":"Patrick Duffy","raw_affiliation_strings":["Patrick Duffy is a member of the Bioinformatics Support Unit at Mayo Clinic. His skills in information technology infrastructure support the bioinformatics needs of the bioinformatics core","Division of Biomedical Statistics and Informatics, Department of Health Sciences Research, Mayo Clinic, 200 First Street SW, Rochester, MN 55905, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Patrick Duffy is a member of the Bioinformatics Support Unit at Mayo Clinic. His skills in information technology infrastructure support the bioinformatics needs of the bioinformatics core","institution_ids":["https://openalex.org/I4210148697"]},{"raw_affiliation_string":"Division of Biomedical Statistics and Informatics, Department of Health Sciences Research, Mayo Clinic, 200 First Street SW, Rochester, MN 55905, USA","institution_ids":["https://openalex.org/I1330342723"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042633311","display_name":"Daniel Quest","orcid":null},"institutions":[{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723"]},{"id":"https://openalex.org/I4210100097","display_name":"Institute of Bioinformatics and Systems Biology","ror":"https://ror.org/0127fwn18","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I3018134672","https://openalex.org/I4210100097"]}],"countries":["DE","US"],"is_corresponding":false,"raw_author_name":"Daniel J. Quest","raw_affiliation_strings":["Daniel J. Quest is a member of the Bioinformatics Support Unit at Mayo Clinic. His skills in information technology infrastructure support the bioinformatics needs of the bioinformatics core","Division of Biomedical Statistics and Informatics, Department of Health Sciences Research, Mayo Clinic, 200 First Street SW, Rochester, MN 55905, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Daniel J. Quest is a member of the Bioinformatics Support Unit at Mayo Clinic. His skills in information technology infrastructure support the bioinformatics needs of the bioinformatics core","institution_ids":["https://openalex.org/I4210100097"]},{"raw_affiliation_string":"Division of Biomedical Statistics and Informatics, Department of Health Sciences Research, Mayo Clinic, 200 First Street SW, Rochester, MN 55905, USA","institution_ids":["https://openalex.org/I1330342723"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041593601","display_name":"Asif Hossain","orcid":null},"institutions":[{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723"]},{"id":"https://openalex.org/I4210148697","display_name":"Institute of Bioinformatics","ror":"https://ror.org/04hqfvm50","country_code":"IN","type":"nonprofit","lineage":["https://openalex.org/I4210148697"]}],"countries":["IN","US"],"is_corresponding":false,"raw_author_name":"Asif Hossain","raw_affiliation_strings":["Asif Hossain is a member of the Bioinformatics Support Unit at Mayo Clinic. His skills in information technology infrastructure support the bioinformatics needs of the bioinformatics core","Division of Biomedical Statistics and Informatics, Department of Health Sciences Research, Mayo Clinic, 200 First Street SW, Rochester, MN 55905, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Asif Hossain is a member of the Bioinformatics Support Unit at Mayo Clinic. His skills in information technology infrastructure support the bioinformatics needs of the bioinformatics core","institution_ids":["https://openalex.org/I4210148697"]},{"raw_affiliation_string":"Division of Biomedical Statistics and Informatics, Department of Health Sciences Research, Mayo Clinic, 200 First Street SW, Rochester, MN 55905, USA","institution_ids":["https://openalex.org/I1330342723"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5097122126","display_name":"Mike A Meiners","orcid":null},"institutions":[{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723"]},{"id":"https://openalex.org/I4210148697","display_name":"Institute of Bioinformatics","ror":"https://ror.org/04hqfvm50","country_code":"IN","type":"nonprofit","lineage":["https://openalex.org/I4210148697"]}],"countries":["IN","US"],"is_corresponding":false,"raw_author_name":"Mike A Meiners","raw_affiliation_strings":["Mike A. Meiners is a member of the Bioinformatics Support Unit at Mayo Clinic. His skills in information technology infrastructure support the bioinformatics needs of the bioinformatics core","Division of Biomedical Statistics and Informatics, Department of Health Sciences Research, Mayo Clinic, 200 First Street SW, Rochester, MN 55905, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Mike A. Meiners is a member of the Bioinformatics Support Unit at Mayo Clinic. His skills in information technology infrastructure support the bioinformatics needs of the bioinformatics core","institution_ids":["https://openalex.org/I4210148697"]},{"raw_affiliation_string":"Division of Biomedical Statistics and Informatics, Department of Health Sciences Research, Mayo Clinic, 200 First Street SW, Rochester, MN 55905, USA","institution_ids":["https://openalex.org/I1330342723"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5071782757","display_name":"Jean\u2010Pierre Kocher","orcid":"https://orcid.org/0000-0002-0260-6773"},"institutions":[{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jean-Pierre Kocher","raw_affiliation_strings":["Division of Biomedical Statistics and Informatics, Department of Health Sciences Research, Mayo Clinic, 200 First Street SW, Rochester, MN 55905, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Biomedical Statistics and Informatics, Department of Health Sciences Research, Mayo Clinic, 200 First Street SW, Rochester, MN 55905, USA","institution_ids":["https://openalex.org/I1330342723"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5071782757"],"corresponding_institution_ids":["https://openalex.org/I1330342723"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":4.0529,"has_fulltext":true,"cited_by_count":85,"citation_normalized_percentile":{"value":0.94378179,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"17","issue":"2","first_page":"346","last_page":"351"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9907000064849854,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.787612795829773},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.725860059261322},{"id":"https://openalex.org/keywords/upload","display_name":"Upload","score":0.4536915421485901},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.35244202613830566},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.19057172536849976},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.12382850050926208}],"concepts":[{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.787612795829773},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.725860059261322},{"id":"https://openalex.org/C71901391","wikidata":"https://www.wikidata.org/wiki/Q7126699","display_name":"Upload","level":2,"score":0.4536915421485901},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.35244202613830566},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.19057172536849976},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.12382850050926208}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020022","descriptor_name":"Genetic Predisposition to Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020022","descriptor_name":"Genetic Predisposition to Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020022","descriptor_name":"Genetic Predisposition to Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bib/bbv051","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbv051","pdf_url":"https://academic.oup.com/bib/article-pdf/17/2/346/6686411/bbv051.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26210358","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26210358","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:3764102","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4793895","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:open-archive.highwire.org:bib:17/2/346","is_oa":false,"landing_page_url":"http://bib.oxfordjournals.org/cgi/content/short/17/2/346","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/bib/bbv051","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbv051","pdf_url":"https://academic.oup.com/bib/article-pdf/17/2/346/6686411/bbv051.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2281926395.pdf","grobid_xml":"https://content.openalex.org/works/W2281926395.grobid-xml"},"referenced_works_count":20,"referenced_works":["https://openalex.org/W1556386043","https://openalex.org/W1798902860","https://openalex.org/W1968349406","https://openalex.org/W1971387795","https://openalex.org/W1976710643","https://openalex.org/W1984068087","https://openalex.org/W1987507232","https://openalex.org/W2029641872","https://openalex.org/W2045164090","https://openalex.org/W2059145105","https://openalex.org/W2096791516","https://openalex.org/W2104570606","https://openalex.org/W2106578986","https://openalex.org/W2113534011","https://openalex.org/W2116121073","https://openalex.org/W2119180969","https://openalex.org/W2145809383","https://openalex.org/W2149992227","https://openalex.org/W2168133698","https://openalex.org/W6638253909"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2361861616","https://openalex.org/W2263699433","https://openalex.org/W2377979023","https://openalex.org/W2218034408","https://openalex.org/W2392921965","https://openalex.org/W2944823289","https://openalex.org/W2358755282","https://openalex.org/W3037018281","https://openalex.org/W2972592048"],"abstract_inverted_index":{"Next-generation":[0],"sequencing":[1,15],"platforms":[2],"are":[3],"widely":[4],"used":[5,149,205],"to":[6,31,43,53,118,150,164,175,183],"discover":[7],"variants":[8,74,91,120,153,156,167],"associated":[9],"with":[10],"disease.":[11],"The":[12,27,141],"processing":[13],"of":[14,106,138],"data":[16],"involves":[17],"read":[18],"alignment,":[19],"variant":[20,22,25,33,37,195],"calling,":[21],"annotation":[23,49,77,122],"and":[24,72,104,121,159,214],"filtering.":[26],"standard":[28],"file":[29,56],"format":[30,39,45],"hold":[32],"calls":[34],"is":[35,172,215],"the":[36,44,54,70,76,102,125,135,199],"call":[38],"(VCF)":[40],"file.":[41],"According":[42],"specifications,":[46],"any":[47,193],"arbitrary":[48],"can":[50,147,179,203],"be":[51,148,181,204],"added":[52],"VCF":[55,71,200],"for":[57,218],"downstream":[58,62],"processing.":[59],"However,":[60],"most":[61],"analysis":[63],"programs":[64],"disregard":[65],"annotations":[66,100],"already":[67],"present":[68],"in":[69,101,124,145,157,160,168],"re-annotate":[73],"using":[75],"provided":[78],"by":[79,128,154,198],"that":[80],"particular":[81],"program.":[82],"This":[83],"precludes":[84],"investigators":[85],"who":[86],"have":[87,109],"collected":[88],"information":[89],"on":[90,206],"from":[92,97,220],"literature":[93],"or":[94,163,192,210],"other":[95,194],"sources":[96],"including":[98],"these":[99],"filtering":[103],"mining":[105],"variants.":[107,140],"We":[108],"developed":[110],"VCF-Miner,":[111],"a":[112,129,207],"graphical":[113],"user":[114],"interface-based":[115],"stand-alone":[116],"tool,":[117],"mine":[119],"stored":[123],"VCF.":[126],"Powered":[127],"MongoDB":[130],"database":[131],"engine,":[132],"VCF-Miner":[133,146,202],"enables":[134],"stepwise":[136],"trimming":[137],"non-relevant":[139],"grouping":[142],"feature":[143],"implemented":[144],"identify":[151,165],"somatic":[152],"contrasting":[155],"tumor":[158],"normal":[161],"samples":[162],"recessive/dominant":[166],"family":[169],"studies.":[170],"It":[171,187],"not":[173],"limited":[174],"human":[176],"data,":[177],"but":[178],"also":[180,188],"extended":[182],"include":[184],"non-diploid":[185],"organisms.":[186],"supports":[189],"copy":[190],"number":[191],"type":[196],"supported":[197],"specification.":[201],"personal":[208],"computer":[209],"large":[211],"institutional":[212],"servers":[213],"freely":[216],"available":[217],"download":[219],"http://bioinformaticstools.mayo.edu/research/vcf-miner/.":[221]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":20},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":17},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":9},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":8},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":1}],"updated_date":"2026-07-30T17:31:21.811387","created_date":"2025-10-10T00:00:00"}
