{"id":"https://openalex.org/W1829437510","doi":"https://doi.org/10.1093/bib/bbv027","title":"Progress and challenges in predicting protein interfaces","display_name":"Progress and challenges in predicting protein interfaces","publication_year":2015,"publication_date":"2015-05-13","ids":{"openalex":"https://openalex.org/W1829437510","doi":"https://doi.org/10.1093/bib/bbv027","mag":"1829437510","pmid":"https://pubmed.ncbi.nlm.nih.gov/25971595"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbv027","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbv027","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4719070","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5002295568","display_name":"Reyhaneh Esmaielbeiki","orcid":null},"institutions":[{"id":"https://openalex.org/I205051169","display_name":"Kingston University London","ror":"https://ror.org/05bbqza97","country_code":"GB","type":"education","lineage":["https://openalex.org/I205051169"]},{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]},{"id":"https://openalex.org/I4210143490","display_name":"Computing Center","ror":"https://ror.org/0557kgc34","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210143490","https://openalex.org/I4210148470"]},{"id":"https://openalex.org/I4210146410","display_name":"Science Oxford","ror":"https://ror.org/04j8yhy50","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I4210146410"]},{"id":"https://openalex.org/I4210154901","display_name":"Kingston University","ror":"https://ror.org/0517ce304","country_code":"US","type":"education","lineage":["https://openalex.org/I4210154901"]}],"countries":["GB","RU","US"],"is_corresponding":false,"raw_author_name":"Reyhaneh Esmaielbeiki","raw_affiliation_strings":["Computing Science and Bioinformatics in the Faculty of Science, Engineering and Computing at Kingston University, London","Department of Computer Science, Oxford University","Department of Statistics, University of Oxford, 1 South Parks Road, Oxford OX1 3TG, UK","Faculty of Science, Engineering and Computing, Penrhyn Road, Kingston upon Thames, Surrey KT1 2EE, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computing Science and Bioinformatics in the Faculty of Science, Engineering and Computing at Kingston University, London","institution_ids":["https://openalex.org/I205051169","https://openalex.org/I4210143490","https://openalex.org/I4210154901"]},{"raw_affiliation_string":"Department of Computer Science, Oxford University","institution_ids":["https://openalex.org/I40120149","https://openalex.org/I4210146410"]},{"raw_affiliation_string":"Department of Statistics, University of Oxford, 1 South Parks Road, Oxford OX1 3TG, UK","institution_ids":["https://openalex.org/I40120149"]},{"raw_affiliation_string":"Faculty of Science, Engineering and Computing, Penrhyn Road, Kingston upon Thames, Surrey KT1 2EE, UK","institution_ids":["https://openalex.org/I205051169"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015244397","display_name":"Konrad Krawczyk","orcid":"https://orcid.org/0000-0003-0697-5522"},"institutions":[{"id":"https://openalex.org/I205051169","display_name":"Kingston University London","ror":"https://ror.org/05bbqza97","country_code":"GB","type":"education","lineage":["https://openalex.org/I205051169"]},{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]},{"id":"https://openalex.org/I4210143490","display_name":"Computing Center","ror":"https://ror.org/0557kgc34","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210143490","https://openalex.org/I4210148470"]},{"id":"https://openalex.org/I4210146410","display_name":"Science Oxford","ror":"https://ror.org/04j8yhy50","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I4210146410"]},{"id":"https://openalex.org/I4210154901","display_name":"Kingston University","ror":"https://ror.org/0517ce304","country_code":"US","type":"education","lineage":["https://openalex.org/I4210154901"]}],"countries":["GB","RU","US"],"is_corresponding":false,"raw_author_name":"Konrad Krawczyk","raw_affiliation_strings":["Computing Science and Bioinformatics in the Faculty of Science, Engineering and Computing at Kingston University, London","Department of Computer Science, Oxford University","Department of Statistics, University of Oxford, 1 South Parks Road, Oxford OX1 3TG, UK","Faculty of Science, Engineering and Computing, Penrhyn Road, Kingston upon Thames, Surrey KT1 2EE, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computing Science and Bioinformatics in the Faculty of Science, Engineering and Computing at Kingston University, London","institution_ids":["https://openalex.org/I205051169","https://openalex.org/I4210143490","https://openalex.org/I4210154901"]},{"raw_affiliation_string":"Department of Computer Science, Oxford University","institution_ids":["https://openalex.org/I40120149","https://openalex.org/I4210146410"]},{"raw_affiliation_string":"Department of Statistics, University of Oxford, 1 South Parks Road, Oxford OX1 3TG, UK","institution_ids":["https://openalex.org/I40120149"]},{"raw_affiliation_string":"Faculty of Science, Engineering and Computing, Penrhyn Road, Kingston upon Thames, Surrey KT1 2EE, UK","institution_ids":["https://openalex.org/I205051169"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034280556","display_name":"Bernhard Knapp","orcid":"https://orcid.org/0000-0002-5714-7105"},"institutions":[{"id":"https://openalex.org/I205051169","display_name":"Kingston University London","ror":"https://ror.org/05bbqza97","country_code":"GB","type":"education","lineage":["https://openalex.org/I205051169"]},{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]},{"id":"https://openalex.org/I4210143490","display_name":"Computing Center","ror":"https://ror.org/0557kgc34","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210143490","https://openalex.org/I4210148470"]},{"id":"https://openalex.org/I4210146410","display_name":"Science Oxford","ror":"https://ror.org/04j8yhy50","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I4210146410"]},{"id":"https://openalex.org/I4210154901","display_name":"Kingston University","ror":"https://ror.org/0517ce304","country_code":"US","type":"education","lineage":["https://openalex.org/I4210154901"]}],"countries":["GB","RU","US"],"is_corresponding":false,"raw_author_name":"Bernhard Knapp","raw_affiliation_strings":["Computing Science and Bioinformatics in the Faculty of Science, Engineering and Computing at Kingston University, London","Department of Computer Science, Oxford University","Department of Statistics, University of Oxford, 1 South Parks Road, Oxford OX1 3TG, UK","Faculty of Science, Engineering and Computing, Penrhyn Road, Kingston upon Thames, Surrey KT1 2EE, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computing Science and Bioinformatics in the Faculty of Science, Engineering and Computing at Kingston University, London","institution_ids":["https://openalex.org/I205051169","https://openalex.org/I4210143490","https://openalex.org/I4210154901"]},{"raw_affiliation_string":"Department of Computer Science, Oxford University","institution_ids":["https://openalex.org/I40120149","https://openalex.org/I4210146410"]},{"raw_affiliation_string":"Department of Statistics, University of Oxford, 1 South Parks Road, Oxford OX1 3TG, UK","institution_ids":["https://openalex.org/I40120149"]},{"raw_affiliation_string":"Faculty of Science, Engineering and Computing, Penrhyn Road, Kingston upon Thames, Surrey KT1 2EE, UK","institution_ids":["https://openalex.org/I205051169"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005552930","display_name":"Jean\u2010Christophe Nebel","orcid":"https://orcid.org/0000-0003-1812-5269"},"institutions":[{"id":"https://openalex.org/I205051169","display_name":"Kingston University London","ror":"https://ror.org/05bbqza97","country_code":"GB","type":"education","lineage":["https://openalex.org/I205051169"]},{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]},{"id":"https://openalex.org/I4210143490","display_name":"Computing Center","ror":"https://ror.org/0557kgc34","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210143490","https://openalex.org/I4210148470"]},{"id":"https://openalex.org/I4210146410","display_name":"Science Oxford","ror":"https://ror.org/04j8yhy50","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I4210146410"]},{"id":"https://openalex.org/I4210154901","display_name":"Kingston University","ror":"https://ror.org/0517ce304","country_code":"US","type":"education","lineage":["https://openalex.org/I4210154901"]}],"countries":["GB","RU","US"],"is_corresponding":false,"raw_author_name":"Jean-Christophe Nebel","raw_affiliation_strings":["Computing Science and Bioinformatics in the Faculty of Science, Engineering and Computing at Kingston University, London","Department of Computer Science, Oxford University","Department of Statistics, University of Oxford, 1 South Parks Road, Oxford OX1 3TG, UK","Faculty of Science, Engineering and Computing, Penrhyn Road, Kingston upon Thames, Surrey KT1 2EE, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computing Science and Bioinformatics in the Faculty of Science, Engineering and Computing at Kingston University, London","institution_ids":["https://openalex.org/I205051169","https://openalex.org/I4210143490","https://openalex.org/I4210154901"]},{"raw_affiliation_string":"Department of Computer Science, Oxford University","institution_ids":["https://openalex.org/I40120149","https://openalex.org/I4210146410"]},{"raw_affiliation_string":"Department of Statistics, University of Oxford, 1 South Parks Road, Oxford OX1 3TG, UK","institution_ids":["https://openalex.org/I40120149"]},{"raw_affiliation_string":"Faculty of Science, Engineering and Computing, Penrhyn Road, Kingston upon Thames, Surrey KT1 2EE, UK","institution_ids":["https://openalex.org/I205051169"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5015572211","display_name":"Charlotte M. Deane","orcid":"https://orcid.org/0000-0003-1388-2252"},"institutions":[{"id":"https://openalex.org/I205051169","display_name":"Kingston University London","ror":"https://ror.org/05bbqza97","country_code":"GB","type":"education","lineage":["https://openalex.org/I205051169"]},{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]},{"id":"https://openalex.org/I4210143490","display_name":"Computing Center","ror":"https://ror.org/0557kgc34","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210143490","https://openalex.org/I4210148470"]},{"id":"https://openalex.org/I4210146410","display_name":"Science Oxford","ror":"https://ror.org/04j8yhy50","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I4210146410"]},{"id":"https://openalex.org/I4210154901","display_name":"Kingston University","ror":"https://ror.org/0517ce304","country_code":"US","type":"education","lineage":["https://openalex.org/I4210154901"]}],"countries":["GB","RU","US"],"is_corresponding":false,"raw_author_name":"Charlotte M. Deane","raw_affiliation_strings":["Computing Science and Bioinformatics in the Faculty of Science, Engineering and Computing at Kingston University, London","Department of Computer Science, Oxford University","Department of Statistics, University of Oxford, 1 South Parks Road, Oxford OX1 3TG, UK","Faculty of Science, Engineering and Computing, Penrhyn Road, Kingston upon Thames, Surrey KT1 2EE, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computing Science and Bioinformatics in the Faculty of Science, Engineering and Computing at Kingston University, London","institution_ids":["https://openalex.org/I205051169","https://openalex.org/I4210143490","https://openalex.org/I4210154901"]},{"raw_affiliation_string":"Department of Computer Science, Oxford University","institution_ids":["https://openalex.org/I40120149","https://openalex.org/I4210146410"]},{"raw_affiliation_string":"Department of Statistics, University of Oxford, 1 South Parks Road, Oxford OX1 3TG, UK","institution_ids":["https://openalex.org/I40120149"]},{"raw_affiliation_string":"Faculty of Science, Engineering and Computing, Penrhyn Road, Kingston upon Thames, Surrey KT1 2EE, UK","institution_ids":["https://openalex.org/I205051169"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3885,"currency":"USD","value_usd":3885},"apc_paid":null,"fwci":6.6605,"has_fulltext":false,"cited_by_count":156,"citation_normalized_percentile":{"value":0.97538217,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"17","issue":"1","first_page":"117","last_page":"131"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9954000115394592,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.72706139087677},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5666319727897644},{"id":"https://openalex.org/keywords/mechanism","display_name":"Mechanism (biology)","score":0.5558913350105286},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.4971776306629181},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.47084662318229675},{"id":"https://openalex.org/keywords/mutagenesis","display_name":"Mutagenesis","score":0.45778337121009827},{"id":"https://openalex.org/keywords/biochemical-engineering","display_name":"Biochemical engineering","score":0.3308221995830536},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.21258589625358582},{"id":"https://openalex.org/keywords/mutation","display_name":"Mutation","score":0.14707455039024353},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.09037816524505615},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.07592204213142395}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.72706139087677},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5666319727897644},{"id":"https://openalex.org/C89611455","wikidata":"https://www.wikidata.org/wiki/Q6804646","display_name":"Mechanism (biology)","level":2,"score":0.5558913350105286},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.4971776306629181},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.47084662318229675},{"id":"https://openalex.org/C16318435","wikidata":"https://www.wikidata.org/wiki/Q149299","display_name":"Mutagenesis","level":4,"score":0.45778337121009827},{"id":"https://openalex.org/C183696295","wikidata":"https://www.wikidata.org/wiki/Q2487696","display_name":"Biochemical engineering","level":1,"score":0.3308221995830536},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.21258589625358582},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.14707455039024353},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.09037816524505615},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.07592204213142395},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000936","descriptor_name":"Antigen-Antibody Complex","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000936","descriptor_name":"Antigen-Antibody Complex","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000936","descriptor_name":"Antigen-Antibody Complex","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000936","descriptor_name":"Antigen-Antibody Complex","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D054730","descriptor_name":"Protein Interaction Domains and Motifs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D054730","descriptor_name":"Protein Interaction Domains and Motifs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D054730","descriptor_name":"Protein Interaction Domains and Motifs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D054730","descriptor_name":"Protein Interaction Domains and Motifs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":7,"locations":[{"id":"doi:10.1093/bib/bbv027","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbv027","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:25971595","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25971595","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":"Journal Article"},{"id":"pmh:oai:eprints.kingston.ac.uk:31417","is_oa":false,"landing_page_url":"https://eprints.kingston.ac.uk/id/eprint/31417/1/Esmaielbeiki-R-31417.pdf","pdf_url":"https://eprints.kingston.ac.uk/id/eprint/31417/1/Esmaielbeiki-R-31417.pdf","source":{"id":"https://openalex.org/S4306400991","display_name":"Research Repository (Kingston University London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801636071","host_organization_name":"Kingston Hospital NHS Trust","host_organization_lineage":["https://openalex.org/I2801636071"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:4719070","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4719070","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.801.2405","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.801.2405","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/58/00/bbv027.PMC4719070.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.896.8890","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.896.8890","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bib.oxfordjournals.org/content/early/2015/05/12/bib.bbv027.full.pdf","raw_type":"text"},{"id":"pmh:oai:open-archive.highwire.org:bib:17/1/117","is_oa":false,"landing_page_url":"http://bib.oxfordjournals.org/cgi/content/short/17/1/117","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:4719070","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4719070","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1326582021","display_name":null,"funder_award_id":"EP/I017909","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G3024511915","display_name":"A new approach to Science at the Life Sciences Interface","funder_award_id":"EP/I017909/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G6428962470","display_name":null,"funder_award_id":"EP/I017909/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":197,"referenced_works":["https://openalex.org/W39708843","https://openalex.org/W216878207","https://openalex.org/W253241607","https://openalex.org/W1480550445","https://openalex.org/W1483099488","https://openalex.org/W1535117461","https://openalex.org/W1573386462","https://openalex.org/W1576514183","https://openalex.org/W1583876435","https://openalex.org/W1964084224","https://openalex.org/W1965150339","https://openalex.org/W1969842170","https://openalex.org/W1971618381","https://openalex.org/W1971722050","https://openalex.org/W1973231190","https://openalex.org/W1973581737","https://openalex.org/W1973964562","https://openalex.org/W1974095426","https://openalex.org/W1974499817","https://openalex.org/W1974987674","https://openalex.org/W1980471592","https://openalex.org/W1981869064","https://openalex.org/W1982679430","https://openalex.org/W1985153601","https://openalex.org/W1985481261","https://openalex.org/W1988972583","https://openalex.org/W1996104904","https://openalex.org/W1996559970","https://openalex.org/W1997803213","https://openalex.org/W1997875463","https://openalex.org/W1998569806","https://openalex.org/W2000093524","https://openalex.org/W2000137866","https://openalex.org/W2000861313","https://openalex.org/W2004414122","https://openalex.org/W2004490529","https://openalex.org/W2006421122","https://openalex.org/W2006481713","https://openalex.org/W2008545402","https://openalex.org/W2010854125","https://openalex.org/W2012104865","https://openalex.org/W2013366764","https://openalex.org/W2013988051","https://openalex.org/W2014499409","https://openalex.org/W2014709498","https://openalex.org/W2014744153","https://openalex.org/W2020575338","https://openalex.org/W2021041804","https://openalex.org/W2021068722","https://openalex.org/W2021295492","https://openalex.org/W2021343666","https://openalex.org/W2021703339","https://openalex.org/W2021904716","https://openalex.org/W2022045489","https://openalex.org/W2023346730","https://openalex.org/W2025775541","https://openalex.org/W2028339001","https://openalex.org/W2033855745","https://openalex.org/W2034256925","https://openalex.org/W2038403313","https://openalex.org/W2038913483","https://openalex.org/W2039063819","https://openalex.org/W2039473152","https://openalex.org/W2040074453","https://openalex.org/W2041044383","https://openalex.org/W2042730255","https://openalex.org/W2043699100","https://openalex.org/W2044359120","https://openalex.org/W2045080704","https://openalex.org/W2045787860","https://openalex.org/W2047468595","https://openalex.org/W2049053970","https://openalex.org/W2054291744","https://openalex.org/W2056756773","https://openalex.org/W2057813163","https://openalex.org/W2057849368","https://openalex.org/W2059446387","https://openalex.org/W2060095860","https://openalex.org/W2060503830","https://openalex.org/W2065921821","https://openalex.org/W2072284383","https://openalex.org/W2073905470","https://openalex.org/W2078302553","https://openalex.org/W2079522831","https://openalex.org/W2080167197","https://openalex.org/W2087300028","https://openalex.org/W2087937056","https://openalex.org/W2088038235","https://openalex.org/W2092006899","https://openalex.org/W2092240438","https://openalex.org/W2093176106","https://openalex.org/W2094148990","https://openalex.org/W2096119514","https://openalex.org/W2097697746","https://openalex.org/W2097980499","https://openalex.org/W2098426148","https://openalex.org/W2099239714","https://openalex.org/W2100316154","https://openalex.org/W2101335785","https://openalex.org/W2102046002","https://openalex.org/W2103053267","https://openalex.org/W2103485392","https://openalex.org/W2104760790","https://openalex.org/W2105438341","https://openalex.org/W2109228802","https://openalex.org/W2109300715","https://openalex.org/W2110036226","https://openalex.org/W2110298304","https://openalex.org/W2110336366","https://openalex.org/W2110505462","https://openalex.org/W2114394047","https://openalex.org/W2115410056","https://openalex.org/W2116475379","https://openalex.org/W2117012297","https://openalex.org/W2117407746","https://openalex.org/W2118507670","https://openalex.org/W2118737745","https://openalex.org/W2119843684","https://openalex.org/W2120836664","https://openalex.org/W2121166097","https://openalex.org/W2122818150","https://openalex.org/W2123375001","https://openalex.org/W2124904677","https://openalex.org/W2125866257","https://openalex.org/W2126755078","https://openalex.org/W2127552260","https://openalex.org/W2127771490","https://openalex.org/W2127814614","https://openalex.org/W2128796532","https://openalex.org/W2130479394","https://openalex.org/W2130606742","https://openalex.org/W2130754579","https://openalex.org/W2132328103","https://openalex.org/W2132514101","https://openalex.org/W2132580736","https://openalex.org/W2134738259","https://openalex.org/W2136525667","https://openalex.org/W2136832587","https://openalex.org/W2137167381","https://openalex.org/W2137991504","https://openalex.org/W2138458178","https://openalex.org/W2138770756","https://openalex.org/W2138815567","https://openalex.org/W2139262886","https://openalex.org/W2140468230","https://openalex.org/W2140971235","https://openalex.org/W2141627824","https://openalex.org/W2142808579","https://openalex.org/W2143467722","https://openalex.org/W2143881057","https://openalex.org/W2144258433","https://openalex.org/W2144627403","https://openalex.org/W2144811782","https://openalex.org/W2147974023","https://openalex.org/W2148217486","https://openalex.org/W2148219066","https://openalex.org/W2149640119","https://openalex.org/W2149984099","https://openalex.org/W2150014697","https://openalex.org/W2151311229","https://openalex.org/W2151445960","https://openalex.org/W2152521138","https://openalex.org/W2154813243","https://openalex.org/W2155194485","https://openalex.org/W2155469822","https://openalex.org/W2156745150","https://openalex.org/W2157576293","https://openalex.org/W2158714788","https://openalex.org/W2158899863","https://openalex.org/W2160307218","https://openalex.org/W2160690759","https://openalex.org/W2162682281","https://openalex.org/W2163174206","https://openalex.org/W2163352757","https://openalex.org/W2163493367","https://openalex.org/W2163561348","https://openalex.org/W2165181282","https://openalex.org/W2165531467","https://openalex.org/W2166701319","https://openalex.org/W2166814967","https://openalex.org/W2167153784","https://openalex.org/W2167315103","https://openalex.org/W2168621448","https://openalex.org/W2169760021","https://openalex.org/W2171732889","https://openalex.org/W2171740232","https://openalex.org/W2172090036","https://openalex.org/W2182598264","https://openalex.org/W2221837915","https://openalex.org/W2540440381","https://openalex.org/W2915344963","https://openalex.org/W2917121126","https://openalex.org/W2952524066","https://openalex.org/W6634239567","https://openalex.org/W6634946700","https://openalex.org/W6655832863","https://openalex.org/W6685929877"],"related_works":["https://openalex.org/W2382997850","https://openalex.org/W2390968135","https://openalex.org/W1576852562","https://openalex.org/W3141735581","https://openalex.org/W2382213751","https://openalex.org/W191244194","https://openalex.org/W2351750670","https://openalex.org/W1597848696","https://openalex.org/W2354715126","https://openalex.org/W2386140904"],"abstract_inverted_index":{"The":[0],"majority":[1],"of":[2,11,20,27,58,86,92,108],"biological":[3],"processes":[4],"are":[5,38],"mediated":[6],"via":[7],"protein-protein":[8],"interactions.":[9],"Determination":[10],"residues":[12],"participating":[13],"in":[14,72],"such":[15,35],"interactions":[16],"improves":[17],"our":[18],"understanding":[19],"molecular":[21],"mechanisms":[22],"and":[23,40,42,74,101],"facilitates":[24],"the":[25,56,81,90,109],"development":[26],"therapeutics.":[28],"Experimental":[29],"approaches":[30],"to":[31,80,104],"identifying":[32],"interacting":[33],"residues,":[34],"as":[36],"mutagenesis,":[37],"costly":[39],"time-consuming":[41],"thus,":[43],"computational":[44,59],"methods":[45,68,95],"for":[46],"this":[47],"purpose":[48],"could":[49],"streamline":[50],"conventional":[51],"pipelines.":[52],"Here":[53],"we":[54],"review":[55],"field":[57],"protein":[60],"interface":[61],"prediction.":[62],"We":[63,88],"make":[64],"a":[65],"distinction":[66],"between":[67],"which":[69],"address":[70],"proteins":[71],"general":[73],"those":[75],"targeted":[76],"at":[77],"antibodies,":[78],"owing":[79],"radically":[82],"different":[83],"binding":[84],"mechanism":[85],"antibodies.":[87],"organize":[89],"multitude":[91],"currently":[93],"available":[94],"hierarchically":[96],"based":[97],"on":[98],"required":[99],"input":[100],"prediction":[102],"principles":[103],"provide":[105],"an":[106],"overview":[107],"field.":[110]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":16},{"year":2023,"cited_by_count":10},{"year":2022,"cited_by_count":16},{"year":2021,"cited_by_count":20},{"year":2020,"cited_by_count":15},{"year":2019,"cited_by_count":18},{"year":2018,"cited_by_count":22},{"year":2017,"cited_by_count":15},{"year":2016,"cited_by_count":9},{"year":2015,"cited_by_count":2}],"updated_date":"2026-08-27T14:10:00.468798","created_date":"2025-10-10T00:00:00"}
