{"id":"https://openalex.org/W1974896839","doi":"https://doi.org/10.1093/bib/bbv011","title":"The role of ontologies in biological and biomedical research: a functional perspective","display_name":"The role of ontologies in biological and biomedical research: a functional perspective","publication_year":2015,"publication_date":"2015-04-10","ids":{"openalex":"https://openalex.org/W1974896839","doi":"https://doi.org/10.1093/bib/bbv011","mag":"1974896839","pmid":"https://pubmed.ncbi.nlm.nih.gov/25863278"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbv011","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbv011","pdf_url":"https://academic.oup.com/bib/article-pdf/16/6/1069/607091/bbv011.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bib/article-pdf/16/6/1069/607091/bbv011.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5043808311","display_name":"Robert Hoehndorf","orcid":"https://orcid.org/0000-0001-8149-5890"},"institutions":[{"id":"https://openalex.org/I189981527","display_name":"Oral Roberts University","ror":"https://ror.org/058hnhf91","country_code":"US","type":"education","lineage":["https://openalex.org/I189981527"]},{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA","US"],"is_corresponding":false,"raw_author_name":"R. Hoehndorf","raw_affiliation_strings":["Robert Hoehndorf is an Assistant Professor in Computer Science at the King Abdullah University of Science and Technology in Thuwal. His research focuses on the applications of ontologies in biology and biomedicine, with a particular emphasis on integrating and analyzing heterogeneous, multimodal data","King Abdullah University of Science & Technology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Robert Hoehndorf is an Assistant Professor in Computer Science at the King Abdullah University of Science and Technology in Thuwal. His research focuses on the applications of ontologies in biology and biomedicine, with a particular emphasis on integrating and analyzing heterogeneous, multimodal data","institution_ids":["https://openalex.org/I189981527"]},{"raw_affiliation_string":"King Abdullah University of Science & Technology","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059588755","display_name":"Paul N. Schofield","orcid":"https://orcid.org/0000-0002-5111-7263"},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]},{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]},{"id":"https://openalex.org/I96357137","display_name":"Saint Paul University","ror":"https://ror.org/01x3t1868","country_code":"CA","type":"education","lineage":["https://openalex.org/I96357137"]}],"countries":["CA","GB","SA"],"is_corresponding":false,"raw_author_name":"P. N. Schofield","raw_affiliation_strings":["Paul N. Schofield is Reader in Biomedical Informatics at the University of Cambridge. His interests are in mouse and human genetics, and building and applying ontologies for phenotypes and disease","Computational Bioscience Research Center, King Abdullah University of Science and Technology, 4700 KAUST, P.O. Box 2882, 23955-6900 Thuwal, Kingdom of Saudi Arabia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Paul N. Schofield is Reader in Biomedical Informatics at the University of Cambridge. His interests are in mouse and human genetics, and building and applying ontologies for phenotypes and disease","institution_ids":["https://openalex.org/I241749","https://openalex.org/I96357137"]},{"raw_affiliation_string":"Computational Bioscience Research Center, King Abdullah University of Science and Technology, 4700 KAUST, P.O. Box 2882, 23955-6900 Thuwal, Kingdom of Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089900113","display_name":"Georgios V. Gkoutos","orcid":"https://orcid.org/0000-0002-2061-091X"},"institutions":[{"id":"https://openalex.org/I4210096427","display_name":"Institut des Sciences Biologiques","ror":"https://ror.org/00rydyx93","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I4210096427"]},{"id":"https://openalex.org/I4210101012","display_name":"Canadian Association of Occupational Therapists","ror":"https://ror.org/00ya8kg34","country_code":"CA","type":"other","lineage":["https://openalex.org/I4210101012"]}],"countries":["CA","FR"],"is_corresponding":false,"raw_author_name":"G. V. Gkoutos","raw_affiliation_strings":["Georgios V. Gkoutos is Reader in Bioinformatics at the University of Aberystwyth. His research interests are in developing biomedical ontologies and applying them to the study of association between genotype and phenotype","Institute of Cancer and Genomic Sciences"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Georgios V. Gkoutos is Reader in Bioinformatics at the University of Aberystwyth. His research interests are in developing biomedical ontologies and applying them to the study of association between genotype and phenotype","institution_ids":["https://openalex.org/I4210101012"]},{"raw_affiliation_string":"Institute of Cancer and Genomic Sciences","institution_ids":["https://openalex.org/I4210096427"]}]}],"institutions":[],"countries_distinct_count":5,"institutions_distinct_count":6,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":9.2331,"has_fulltext":true,"cited_by_count":281,"citation_normalized_percentile":{"value":0.98600451,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"16","issue":"6","first_page":"1069","last_page":"1080"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9926000237464905,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7320431470870972},{"id":"https://openalex.org/keywords/biomedicine","display_name":"Biomedicine","score":0.6863932609558105},{"id":"https://openalex.org/keywords/open-biomedical-ontologies","display_name":"Open Biomedical Ontologies","score":0.6158931255340576},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.6144046187400818},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.6017571687698364},{"id":"https://openalex.org/keywords/controlled-vocabulary","display_name":"Controlled vocabulary","score":0.5913151502609253},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5785244703292847},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.5683018565177917},{"id":"https://openalex.org/keywords/perspective","display_name":"Perspective (graphical)","score":0.5256734490394592},{"id":"https://openalex.org/keywords/meaning","display_name":"Meaning (existential)","score":0.49890708923339844},{"id":"https://openalex.org/keywords/identifier","display_name":"Identifier","score":0.48774296045303345},{"id":"https://openalex.org/keywords/vocabulary","display_name":"Vocabulary","score":0.4757213890552521},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.41633516550064087},{"id":"https://openalex.org/keywords/idef5","display_name":"IDEF5","score":0.4121294617652893},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3536697030067444},{"id":"https://openalex.org/keywords/knowledge-management","display_name":"Knowledge management","score":0.3029414117336273},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.26903069019317627},{"id":"https://openalex.org/keywords/domain-knowledge","display_name":"Domain knowledge","score":0.24001410603523254},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.22104182839393616},{"id":"https://openalex.org/keywords/ontology-based-data-integration","display_name":"Ontology-based data integration","score":0.21157538890838623},{"id":"https://openalex.org/keywords/ontology-alignment","display_name":"Ontology alignment","score":0.17010188102722168},{"id":"https://openalex.org/keywords/epistemology","display_name":"Epistemology","score":0.1611778438091278},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.14596334099769592}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7320431470870972},{"id":"https://openalex.org/C66782513","wikidata":"https://www.wikidata.org/wiki/Q864601","display_name":"Biomedicine","level":2,"score":0.6863932609558105},{"id":"https://openalex.org/C137982476","wikidata":"https://www.wikidata.org/wiki/Q7072326","display_name":"Open Biomedical Ontologies","level":5,"score":0.6158931255340576},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.6144046187400818},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.6017571687698364},{"id":"https://openalex.org/C110615152","wikidata":"https://www.wikidata.org/wiki/Q1469824","display_name":"Controlled vocabulary","level":2,"score":0.5913151502609253},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5785244703292847},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.5683018565177917},{"id":"https://openalex.org/C12713177","wikidata":"https://www.wikidata.org/wiki/Q1900281","display_name":"Perspective (graphical)","level":2,"score":0.5256734490394592},{"id":"https://openalex.org/C2780876879","wikidata":"https://www.wikidata.org/wiki/Q3054749","display_name":"Meaning (existential)","level":2,"score":0.49890708923339844},{"id":"https://openalex.org/C154504017","wikidata":"https://www.wikidata.org/wiki/Q853614","display_name":"Identifier","level":2,"score":0.48774296045303345},{"id":"https://openalex.org/C2777601683","wikidata":"https://www.wikidata.org/wiki/Q6499736","display_name":"Vocabulary","level":2,"score":0.4757213890552521},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.41633516550064087},{"id":"https://openalex.org/C118248724","wikidata":"https://www.wikidata.org/wiki/Q5969997","display_name":"IDEF5","level":4,"score":0.4121294617652893},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3536697030067444},{"id":"https://openalex.org/C56739046","wikidata":"https://www.wikidata.org/wiki/Q192060","display_name":"Knowledge management","level":1,"score":0.3029414117336273},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.26903069019317627},{"id":"https://openalex.org/C207685749","wikidata":"https://www.wikidata.org/wiki/Q2088941","display_name":"Domain knowledge","level":2,"score":0.24001410603523254},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.22104182839393616},{"id":"https://openalex.org/C22550185","wikidata":"https://www.wikidata.org/wiki/Q7095047","display_name":"Ontology-based data integration","level":3,"score":0.21157538890838623},{"id":"https://openalex.org/C98893333","wikidata":"https://www.wikidata.org/wiki/Q4339878","display_name":"Ontology alignment","level":4,"score":0.17010188102722168},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.1611778438091278},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.14596334099769592},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":8,"locations":[{"id":"doi:10.1093/bib/bbv011","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbv011","pdf_url":"https://academic.oup.com/bib/article-pdf/16/6/1069/607091/bbv011.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:25863278","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25863278","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.790.74","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.790.74","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/9a/4b/bbv011.PMC4652617.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.880.3203","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.880.3203","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bib.oxfordjournals.org/content/early/2015/04/10/bib.bbv011.full.pdf","raw_type":"text"},{"id":"pmh:oai:europepmc.org:3628213","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4652617","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/4acc12be-556b-457a-b7b5-8809a442e808","is_oa":true,"landing_page_url":"https://research.birmingham.ac.uk/en/publications/4acc12be-556b-457a-b7b5-8809a442e808","pdf_url":null,"source":{"id":"https://openalex.org/S4306402634","display_name":"University of Birmingham Research Portal (University of Birmingham)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I79619799","host_organization_name":"University of Birmingham","host_organization_lineage":["https://openalex.org/I79619799"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Hoehndorf, R, Schofield, P N & Gkoutos, G V 2015, 'The role of ontologies in biological and biomedical research: a functional perspective', Briefings in Bioinformatics, vol. 16, no. 6, pp. 1069-1080. https://doi.org/10.1093/bib/bbv011","raw_type":"article"},{"id":"pmh:oai:repository.kaust.edu.sa:10754/543733","is_oa":true,"landing_page_url":"http://hdl.handle.net/10754/543733","pdf_url":null,"source":{"id":"https://openalex.org/S4306401596","display_name":"King Abdullah University of Science and Technology Repository (King Abdullah University of Science and Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I71920554","host_organization_name":"King Abdullah University of Science and Technology","host_organization_lineage":["https://openalex.org/I71920554"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:www.repository.cam.ac.uk:1810/254066","is_oa":true,"landing_page_url":"https://www.repository.cam.ac.uk/handle/1810/254066","pdf_url":null,"source":{"id":"https://openalex.org/S4306401777","display_name":"Apollo (University of Cambridge)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I241749","host_organization_name":"University of Cambridge","host_organization_lineage":["https://openalex.org/I241749"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1093/bib/bbv011","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbv011","pdf_url":"https://academic.oup.com/bib/article-pdf/16/6/1069/607091/bbv011.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5699999928474426,"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1974896839.pdf","grobid_xml":"https://content.openalex.org/works/W1974896839.grobid-xml"},"referenced_works_count":138,"referenced_works":["https://openalex.org/W55962619","https://openalex.org/W70893897","https://openalex.org/W91108659","https://openalex.org/W102787101","https://openalex.org/W124940209","https://openalex.org/W174753650","https://openalex.org/W852643139","https://openalex.org/W1482585805","https://openalex.org/W1516351239","https://openalex.org/W1522659348","https://openalex.org/W1541298030","https://openalex.org/W1547191127","https://openalex.org/W1555563750","https://openalex.org/W1566952502","https://openalex.org/W1580895464","https://openalex.org/W1606910296","https://openalex.org/W1608781114","https://openalex.org/W1628054318","https://openalex.org/W1678959094","https://openalex.org/W1821527815","https://openalex.org/W1836367264","https://openalex.org/W1871852719","https://openalex.org/W1884449811","https://openalex.org/W1969709265","https://openalex.org/W1975503985","https://openalex.org/W1977126651","https://openalex.org/W1977391294","https://openalex.org/W1988841006","https://openalex.org/W1993977866","https://openalex.org/W1994474588","https://openalex.org/W1997143682","https://openalex.org/W1998028266","https://openalex.org/W1999789303","https://openalex.org/W2003023097","https://openalex.org/W2008998978","https://openalex.org/W2012361142","https://openalex.org/W2022451103","https://openalex.org/W2033237963","https://openalex.org/W2040712196","https://openalex.org/W2041073071","https://openalex.org/W2041200987","https://openalex.org/W2048024098","https://openalex.org/W2048396937","https://openalex.org/W2053673723","https://openalex.org/W2054470867","https://openalex.org/W2058490165","https://openalex.org/W2059313072","https://openalex.org/W2062163602","https://openalex.org/W2067893742","https://openalex.org/W2079470039","https://openalex.org/W2080770151","https://openalex.org/W2084104913","https://openalex.org/W2084168100","https://openalex.org/W2085860988","https://openalex.org/W2087065641","https://openalex.org/W2094726706","https://openalex.org/W2095687577","https://openalex.org/W2096297868","https://openalex.org/W2096503372","https://openalex.org/W2098440497","https://openalex.org/W2099364528","https://openalex.org/W2100017293","https://openalex.org/W2102814386","https://openalex.org/W2103017472","https://openalex.org/W2103260426","https://openalex.org/W2103308144","https://openalex.org/W2104990432","https://openalex.org/W2106797966","https://openalex.org/W2110301462","https://openalex.org/W2112227057","https://openalex.org/W2112872859","https://openalex.org/W2113142309","https://openalex.org/W2114702301","https://openalex.org/W2116034137","https://openalex.org/W2117486996","https://openalex.org/W2123171788","https://openalex.org/W2124834853","https://openalex.org/W2125910575","https://openalex.org/W2126067687","https://openalex.org/W2127480960","https://openalex.org/W2127507437","https://openalex.org/W2130252997","https://openalex.org/W2130367921","https://openalex.org/W2130410032","https://openalex.org/W2130698371","https://openalex.org/W2131660156","https://openalex.org/W2132784310","https://openalex.org/W2133109597","https://openalex.org/W2133550211","https://openalex.org/W2133614244","https://openalex.org/W2136317480","https://openalex.org/W2136961946","https://openalex.org/W2137428218","https://openalex.org/W2139315672","https://openalex.org/W2141545183","https://openalex.org/W2142096740","https://openalex.org/W2142364412","https://openalex.org/W2142572836","https://openalex.org/W2143962926","https://openalex.org/W2146495783","https://openalex.org/W2150369226","https://openalex.org/W2150838562","https://openalex.org/W2153842379","https://openalex.org/W2154331071","https://openalex.org/W2154490357","https://openalex.org/W2154654747","https://openalex.org/W2154829072","https://openalex.org/W2154896031","https://openalex.org/W2155142785","https://openalex.org/W2157072814","https://openalex.org/W2159151673","https://openalex.org/W2159583324","https://openalex.org/W2161358836","https://openalex.org/W2161955763","https://openalex.org/W2162323699","https://openalex.org/W2162361752","https://openalex.org/W2163670493","https://openalex.org/W2164290176","https://openalex.org/W2164947858","https://openalex.org/W2168700610","https://openalex.org/W2171815113","https://openalex.org/W2184417913","https://openalex.org/W2226279752","https://openalex.org/W2242459625","https://openalex.org/W2399065163","https://openalex.org/W2401111576","https://openalex.org/W2401966583","https://openalex.org/W2501765443","https://openalex.org/W2555756618","https://openalex.org/W2914205435","https://openalex.org/W2952411838","https://openalex.org/W2985505473","https://openalex.org/W3021132970","https://openalex.org/W3100767471","https://openalex.org/W3101974058","https://openalex.org/W4233949424","https://openalex.org/W4242358680","https://openalex.org/W4254165724"],"related_works":["https://openalex.org/W1801798365","https://openalex.org/W2942194862","https://openalex.org/W4290780032","https://openalex.org/W193005289","https://openalex.org/W15074213","https://openalex.org/W2399216429","https://openalex.org/W991275336","https://openalex.org/W85159896","https://openalex.org/W2403240707","https://openalex.org/W2414523293"],"abstract_inverted_index":{"Ontologies":[0],"are":[1],"widely":[2],"used":[3,143],"in":[4,12,20,59,102,127,144,156,159,163],"biological":[5],"and":[6,30,57,61,67,81,96,114,129,137,167],"biomedical":[7],"research.":[8,148],"Their":[9],"success":[10],"lies":[11,101],"their":[13,161],"combination":[14],"of":[15,25,40,47,54,64,76,79,85,105,116,146],"four":[16,108],"main":[17],"features":[18,87,109],"present":[19],"almost":[21],"all":[22],"ontologies:":[23],"provision":[24,39,46,63],"standard":[26],"identifiers":[27],"for":[28,43,153],"classes":[29,56,80],"relations":[31,58],"that":[32,49,69,90],"represent":[33],"the":[34,51,55,62,77,103],"phenomena":[35],"within":[36],"a":[37,41,44,98,122],"domain;":[38,45],"vocabulary":[42],"metadata":[48],"describes":[50],"intended":[52],"meaning":[53,78],"ontologies;":[60],"machine-readable":[65],"axioms":[66],"definitions":[68],"enable":[70],"computational":[71],"access":[72,95],"to":[73,110],"some":[74],"aspects":[75],"relations.":[82],"While":[83],"each":[84],"these":[86,107],"enables":[88],"applications":[89],"facilitate":[91],"data":[92,94,165],"integration,":[93],"analysis,":[97],"great":[99],"potential":[100],"possibility":[104],"combining":[106],"support":[111,145],"integrative":[112,147],"analysis":[113],"interpretation":[115],"multimodal":[117],"data.":[118],"Here,":[119],"we":[120],"provide":[121],"functional":[123],"perspective":[124],"on":[125,132],"ontologies":[126,134,155],"biology":[128],"biomedicine,":[130],"focusing":[131],"what":[133],"can":[135,141],"do":[136],"describing":[138],"how":[139],"they":[140],"be":[142],"We":[149],"also":[150],"outline":[151],"perspectives":[152],"using":[154],"data-driven":[157],"science,":[158],"particular":[160],"application":[162],"structured":[164],"mining":[166],"machine":[168],"learning":[169],"applications.":[170]},"counts_by_year":[{"year":2026,"cited_by_count":7},{"year":2025,"cited_by_count":10},{"year":2024,"cited_by_count":21},{"year":2023,"cited_by_count":25},{"year":2022,"cited_by_count":32},{"year":2021,"cited_by_count":36},{"year":2020,"cited_by_count":47},{"year":2019,"cited_by_count":35},{"year":2018,"cited_by_count":30},{"year":2017,"cited_by_count":18},{"year":2016,"cited_by_count":18},{"year":2015,"cited_by_count":1}],"updated_date":"2026-07-30T17:31:21.811387","created_date":"2025-10-10T00:00:00"}
