{"id":"https://openalex.org/W1992360682","doi":"https://doi.org/10.1093/bib/bbu052","title":"Sample size calculation in metabolic phenotyping studies","display_name":"Sample size calculation in metabolic phenotyping studies","publication_year":2015,"publication_date":"2015-01-19","ids":{"openalex":"https://openalex.org/W1992360682","doi":"https://doi.org/10.1093/bib/bbu052","mag":"1992360682","pmid":"https://pubmed.ncbi.nlm.nih.gov/25600654"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbu052","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbu052","pdf_url":"https://academic.oup.com/bib/article-pdf/16/5/813/5032587/bbu052.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/16/5/813/5032587/bbu052.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5035797914","display_name":"\u00c9lise Billoir","orcid":"https://orcid.org/0000-0001-9012-3298"},"institutions":[{"id":"https://openalex.org/I4210145544","display_name":"Laboratoire Interdisciplinaire des Environnements Continentaux","ror":"https://ror.org/05je79696","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I4210107625","https://openalex.org/I4210145544","https://openalex.org/I4210148025","https://openalex.org/I4387156182","https://openalex.org/I90183372","https://openalex.org/I90183372"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Elise Billoir","raw_affiliation_strings":["Laboratoire Interdisciplinaire des Environnements Continentaux"],"affiliations":[{"raw_affiliation_string":"Laboratoire Interdisciplinaire des Environnements Continentaux","institution_ids":["https://openalex.org/I4210145544"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015988270","display_name":"Vincent Navratil","orcid":"https://orcid.org/0000-0001-9974-1877"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Vincent Navratil","raw_affiliation_strings":["Universit\u00e9 Claude Bernard. Lyon-1"],"affiliations":[{"raw_affiliation_string":"Universit\u00e9 Claude Bernard. Lyon-1","institution_ids":["https://openalex.org/I100532134"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5003236045","display_name":"Benjamin J. Blaise","orcid":"https://orcid.org/0000-0002-7009-276X"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Benjamin J. Blaise","raw_affiliation_strings":["Universit\u00e9 Claude Bernard. Lyon-1"],"affiliations":[{"raw_affiliation_string":"Universit\u00e9 Claude Bernard. Lyon-1","institution_ids":["https://openalex.org/I100532134"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5035797914"],"corresponding_institution_ids":["https://openalex.org/I4210145544"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":0.8752,"has_fulltext":true,"cited_by_count":54,"citation_normalized_percentile":{"value":0.73271248,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"16","issue":"5","first_page":"813","last_page":"819"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9940000176429749,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11235","display_name":"Statistical Methods in Clinical Trials","score":0.9812999963760376,"subfield":{"id":"https://openalex.org/subfields/2613","display_name":"Statistics and Probability"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sample-size-determination","display_name":"Sample size determination","score":0.7636552453041077},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5908668041229248},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5637384653091431},{"id":"https://openalex.org/keywords/matlab","display_name":"MATLAB","score":0.5013942718505859},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.49950218200683594},{"id":"https://openalex.org/keywords/a-priori-and-a-posteriori","display_name":"A priori and a posteriori","score":0.4964485764503479},{"id":"https://openalex.org/keywords/smoothing","display_name":"Smoothing","score":0.4901174008846283},{"id":"https://openalex.org/keywords/kernel-density-estimation","display_name":"Kernel density estimation","score":0.4840502142906189},{"id":"https://openalex.org/keywords/kernel","display_name":"Kernel (algebra)","score":0.41798636317253113},{"id":"https://openalex.org/keywords/sample","display_name":"Sample (material)","score":0.41498082876205444},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.34512123465538025},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3386465311050415},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.29536646604537964},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1006021797657013}],"concepts":[{"id":"https://openalex.org/C129848803","wikidata":"https://www.wikidata.org/wiki/Q2564360","display_name":"Sample size determination","level":2,"score":0.7636552453041077},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5908668041229248},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5637384653091431},{"id":"https://openalex.org/C2780365114","wikidata":"https://www.wikidata.org/wiki/Q169478","display_name":"MATLAB","level":2,"score":0.5013942718505859},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.49950218200683594},{"id":"https://openalex.org/C75553542","wikidata":"https://www.wikidata.org/wiki/Q178161","display_name":"A priori and a posteriori","level":2,"score":0.4964485764503479},{"id":"https://openalex.org/C3770464","wikidata":"https://www.wikidata.org/wiki/Q775963","display_name":"Smoothing","level":2,"score":0.4901174008846283},{"id":"https://openalex.org/C71134354","wikidata":"https://www.wikidata.org/wiki/Q458825","display_name":"Kernel density estimation","level":3,"score":0.4840502142906189},{"id":"https://openalex.org/C74193536","wikidata":"https://www.wikidata.org/wiki/Q574844","display_name":"Kernel (algebra)","level":2,"score":0.41798636317253113},{"id":"https://openalex.org/C198531522","wikidata":"https://www.wikidata.org/wiki/Q485146","display_name":"Sample (material)","level":2,"score":0.41498082876205444},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.34512123465538025},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3386465311050415},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.29536646604537964},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1006021797657013},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C185429906","wikidata":"https://www.wikidata.org/wiki/Q1130160","display_name":"Estimator","level":2,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D008660","descriptor_name":"Metabolism","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008660","descriptor_name":"Metabolism","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008660","descriptor_name":"Metabolism","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018401","descriptor_name":"Sample Size","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018401","descriptor_name":"Sample Size","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018401","descriptor_name":"Sample Size","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbu052","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbu052","pdf_url":"https://academic.oup.com/bib/article-pdf/16/5/813/5032587/bbu052.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:25600654","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25600654","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:HAL:hal-01251729v1","is_oa":true,"landing_page_url":"https://hal.science/hal-01251729","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Briefings in Bioinformatics, 2015, 16 (5), pp.813-819. &#x27E8;10.1093/bib/bbu052&#x27E9;","raw_type":"Journal articles"}],"best_oa_location":{"id":"doi:10.1093/bib/bbu052","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbu052","pdf_url":"https://academic.oup.com/bib/article-pdf/16/5/813/5032587/bbu052.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1992360682.pdf","grobid_xml":"https://content.openalex.org/works/W1992360682.grobid-xml"},"referenced_works_count":40,"referenced_works":["https://openalex.org/W35082804","https://openalex.org/W1534340623","https://openalex.org/W1578032204","https://openalex.org/W1582448311","https://openalex.org/W1596515083","https://openalex.org/W1938091964","https://openalex.org/W1971059510","https://openalex.org/W1971857036","https://openalex.org/W1980863985","https://openalex.org/W1986523067","https://openalex.org/W1997182468","https://openalex.org/W2003524197","https://openalex.org/W2003560892","https://openalex.org/W2013036395","https://openalex.org/W2014788561","https://openalex.org/W2016020185","https://openalex.org/W2016949610","https://openalex.org/W2017411281","https://openalex.org/W2028545055","https://openalex.org/W2033743210","https://openalex.org/W2035715038","https://openalex.org/W2045759042","https://openalex.org/W2049509720","https://openalex.org/W2052568053","https://openalex.org/W2055256526","https://openalex.org/W2081441045","https://openalex.org/W2087228724","https://openalex.org/W2089468765","https://openalex.org/W2099657218","https://openalex.org/W2104787245","https://openalex.org/W2107869090","https://openalex.org/W2110065044","https://openalex.org/W2129571249","https://openalex.org/W2132073384","https://openalex.org/W2139734952","https://openalex.org/W2145229405","https://openalex.org/W2151873232","https://openalex.org/W2153513927","https://openalex.org/W2154563407","https://openalex.org/W3105630349"],"related_works":["https://openalex.org/W2383807498","https://openalex.org/W1978572805","https://openalex.org/W1997992934","https://openalex.org/W1987225439","https://openalex.org/W4238188170","https://openalex.org/W2125114371","https://openalex.org/W2019977573","https://openalex.org/W2149980199","https://openalex.org/W3125766170","https://openalex.org/W2040641410"],"abstract_inverted_index":{"The":[0,120,137],"number":[1],"of":[2,87,111,140,177,189,203],"samples":[3],"needed":[4],"to":[5,40,65,131,145],"identify":[6,146],"significant":[7,163,196,205],"effects":[8],"is":[9,37,143,184,209,240],"a":[10,33,52,127,187,245],"key":[11],"question":[12],"in":[13,116,186,211,223,236],"biomedical":[14],"studies,":[15,28],"with":[16,50,244],"consequences":[17],"on":[18],"experimental":[19],"designs,":[20],"costs":[21],"and":[22,45,97,149,172,219,222],"potential":[23],"discoveries.":[24],"In":[25,69],"metabolic":[26,55,79,117,147,164,199],"phenotyping":[27,80,118],"sample":[29,74,114,181],"size":[30,75,91,115,182],"determination":[31,110,183],"remains":[32],"complex":[34],"step.":[35],"This":[36],"due":[38],"particularly":[39],"the":[41,46,88,109,169],"multiple":[42],"hypothesis-testing":[43],"framework":[44],"top-down":[47],"hypothesis-free":[48],"approach,":[49],"no":[51,61],"priori":[53],"known":[54],"target.":[56],"Until":[57],"now,":[58],"there":[59],"was":[60,104],"standard":[62],"procedure":[63,121,142],"available":[64,241],"address":[66],"this":[67,70],"purpose.":[68],"review,":[71],"we":[72],"discuss":[73],"estimation":[76],"procedures":[77],"for":[78,95,174,217,226],"studies.":[81,119],"We":[82],"release":[83],"an":[84,112,133],"automated":[85],"implementation":[86],"Data-driven":[89],"Sample":[90],"Determination":[92],"(DSD)":[93],"algorithm":[94],"MATLAB":[96,212],"GNU":[98,224,237],"Octave.":[99],"Original":[100],"research":[101],"concerning":[102],"DSD":[103,107,207],"published":[105],"elsewhere.":[106],"allows":[108],"optimized":[113],"uses":[122],"analytical":[123],"data":[124,135,175],"only":[125],"from":[126],"small":[128],"pilot":[129],"cohort":[130],"generate":[132],"expanded":[134],"set.":[136],"statistical":[138],"recoupling":[139],"variables":[141],"used":[144],"variables,":[148],"their":[150],"intensity":[151],"distributions":[152],"are":[153,166,232],"estimated":[154],"by":[155],"Kernel":[156,218],"smoothing":[157],"or":[158,198],"log-normal":[159,220,227],"density":[160,230],"fitting.":[161],"Statistically":[162],"variations":[165],"evaluated":[167],"using":[168],"Benjamini-Yekutieli":[170],"correction":[171],"processed":[173],"sets":[176],"various":[178],"sizes.":[179],"Optimal":[180],"achieved":[185],"context":[188],"biomarker":[190],"discovery":[191],"(at":[192],"least":[193],"one":[194],"statistically":[195,204],"variation)":[197],"exploration":[200],"(a":[201],"maximum":[202],"variations).":[206],"toolbox":[208],"encoded":[210],"R2008A":[213],"(Mathworks,":[214],"Natick,":[215],"MA)":[216],"estimates,":[221],"Octave":[225],"estimates":[228,231],"(Kernel":[229],"not":[233],"robust":[234],"enough":[235],"octave).":[238],"It":[239],"at":[242,247],"http://www.prabi.fr/redmine/projects/dsd/repository,":[243],"tutorial":[246],"http://www.prabi.fr/redmine/projects/dsd/wiki.":[248]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":9},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":13},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":1},{"year":2015,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
