{"id":"https://openalex.org/W2025536812","doi":"https://doi.org/10.1093/bib/bbu009","title":"Advances in network-based metabolic pathway analysis and gene expression data integration","display_name":"Advances in network-based metabolic pathway analysis and gene expression data integration","publication_year":2014,"publication_date":"2014-03-13","ids":{"openalex":"https://openalex.org/W2025536812","doi":"https://doi.org/10.1093/bib/bbu009","mag":"2025536812","pmid":"https://pubmed.ncbi.nlm.nih.gov/24626528"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbu009","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbu009","pdf_url":"https://academic.oup.com/bib/article-pdf/16/2/265/681613/bbu009.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/16/2/265/681613/bbu009.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5062088195","display_name":"Alberto Rezola","orcid":"https://orcid.org/0000-0001-9942-5487"},"institutions":[{"id":"https://openalex.org/I59433898","display_name":"Brunel University of London","ror":"https://ror.org/00dn4t376","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I59433898"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"A. Rezola","raw_affiliation_strings":["Paseo Mikeletegi, No 48, 20009, San Sebastia \u00b4n, SPAIN","Brunel University"],"affiliations":[{"raw_affiliation_string":"Paseo Mikeletegi, No 48, 20009, San Sebastia \u00b4n, SPAIN","institution_ids":[]},{"raw_affiliation_string":"Brunel University","institution_ids":["https://openalex.org/I59433898"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046646488","display_name":"Jon Pey","orcid":null},"institutions":[{"id":"https://openalex.org/I59433898","display_name":"Brunel University of London","ror":"https://ror.org/00dn4t376","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I59433898"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"J. Pey","raw_affiliation_strings":["Paseo Mikeletegi, No 48, 20009, San Sebastia \u00b4n, SPAIN","Brunel University"],"affiliations":[{"raw_affiliation_string":"Paseo Mikeletegi, No 48, 20009, San Sebastia \u00b4n, SPAIN","institution_ids":[]},{"raw_affiliation_string":"Brunel University","institution_ids":["https://openalex.org/I59433898"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070151783","display_name":"Luis Tobalina","orcid":"https://orcid.org/0000-0002-1947-8309"},"institutions":[{"id":"https://openalex.org/I59433898","display_name":"Brunel University of London","ror":"https://ror.org/00dn4t376","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I59433898"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"L. Tobalina","raw_affiliation_strings":["Brunel University","Paseo Mikeletegi, No 48, 20009, San Sebastia \u00b4n, SPAIN"],"affiliations":[{"raw_affiliation_string":"Brunel University","institution_ids":["https://openalex.org/I59433898"]},{"raw_affiliation_string":"Paseo Mikeletegi, No 48, 20009, San Sebastia \u00b4n, SPAIN","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046603247","display_name":"\u00c1ngel Rubio","orcid":"https://orcid.org/0000-0002-3274-2450"},"institutions":[{"id":"https://openalex.org/I59433898","display_name":"Brunel University of London","ror":"https://ror.org/00dn4t376","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I59433898"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"A. Rubio","raw_affiliation_strings":["Brunel University","Paseo Mikeletegi, No 48, 20009, San Sebastia \u00b4n, SPAIN"],"affiliations":[{"raw_affiliation_string":"Brunel University","institution_ids":["https://openalex.org/I59433898"]},{"raw_affiliation_string":"Paseo Mikeletegi, No 48, 20009, San Sebastia \u00b4n, SPAIN","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079112547","display_name":"J. E. Beasley","orcid":"https://orcid.org/0000-0002-4758-9970"},"institutions":[{"id":"https://openalex.org/I59433898","display_name":"Brunel University of London","ror":"https://ror.org/00dn4t376","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I59433898"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"J. E. Beasley","raw_affiliation_strings":["Paseo Mikeletegi, No 48, 20009, San Sebastia \u00b4n, SPAIN","Brunel University"],"affiliations":[{"raw_affiliation_string":"Paseo Mikeletegi, No 48, 20009, San Sebastia \u00b4n, SPAIN","institution_ids":[]},{"raw_affiliation_string":"Brunel University","institution_ids":["https://openalex.org/I59433898"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5010754980","display_name":"Francisco J. Planes","orcid":"https://orcid.org/0000-0003-1155-3105"},"institutions":[{"id":"https://openalex.org/I59433898","display_name":"Brunel University of London","ror":"https://ror.org/00dn4t376","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I59433898"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"F. J. Planes","raw_affiliation_strings":["Paseo Mikeletegi, No 48, 20009, San Sebastia \u00b4n, SPAIN","Brunel University"],"affiliations":[{"raw_affiliation_string":"Paseo Mikeletegi, No 48, 20009, San Sebastia \u00b4n, SPAIN","institution_ids":[]},{"raw_affiliation_string":"Brunel University","institution_ids":["https://openalex.org/I59433898"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5010754980"],"corresponding_institution_ids":["https://openalex.org/I59433898"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":2.0915,"has_fulltext":true,"cited_by_count":34,"citation_normalized_percentile":{"value":0.86933584,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"16","issue":"2","first_page":"265","last_page":"279"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metabolic-network","display_name":"Metabolic network","score":0.7326492071151733},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6457078456878662},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5856305360794067},{"id":"https://openalex.org/keywords/metabolic-pathway","display_name":"Metabolic pathway","score":0.5829374194145203},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.525905966758728},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.5162374973297119},{"id":"https://openalex.org/keywords/flux-balance-analysis","display_name":"Flux balance analysis","score":0.4792363941669464},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.44290781021118164},{"id":"https://openalex.org/keywords/flux","display_name":"Flux (metallurgy)","score":0.4357847571372986},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.43398240208625793},{"id":"https://openalex.org/keywords/computation","display_name":"Computation","score":0.41670462489128113},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.41073736548423767},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3256889581680298},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2958587408065796},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.28841501474380493},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.27465468645095825},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1443682610988617},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.08162140846252441},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.08122789859771729}],"concepts":[{"id":"https://openalex.org/C101810790","wikidata":"https://www.wikidata.org/wiki/Q2263094","display_name":"Metabolic network","level":2,"score":0.7326492071151733},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6457078456878662},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5856305360794067},{"id":"https://openalex.org/C192989942","wikidata":"https://www.wikidata.org/wiki/Q68685","display_name":"Metabolic pathway","level":3,"score":0.5829374194145203},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.525905966758728},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.5162374973297119},{"id":"https://openalex.org/C167091322","wikidata":"https://www.wikidata.org/wiki/Q5463029","display_name":"Flux balance analysis","level":2,"score":0.4792363941669464},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.44290781021118164},{"id":"https://openalex.org/C68709404","wikidata":"https://www.wikidata.org/wiki/Q1134475","display_name":"Flux (metallurgy)","level":2,"score":0.4357847571372986},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.43398240208625793},{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.41670462489128113},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.41073736548423767},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3256889581680298},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2958587408065796},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.28841501474380493},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.27465468645095825},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1443682610988617},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.08162140846252441},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.08122789859771729},{"id":"https://openalex.org/C191897082","wikidata":"https://www.wikidata.org/wiki/Q11467","display_name":"Metallurgy","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbu009","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbu009","pdf_url":"https://academic.oup.com/bib/article-pdf/16/2/265/681613/bbu009.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24626528","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24626528","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bib/bbu009","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbu009","pdf_url":"https://academic.oup.com/bib/article-pdf/16/2/265/681613/bbu009.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320322649","display_name":"Universidad de Navarra","ror":"https://ror.org/02rxc7m23"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2025536812.pdf","grobid_xml":"https://content.openalex.org/works/W2025536812.grobid-xml"},"referenced_works_count":107,"referenced_works":["https://openalex.org/W286100003","https://openalex.org/W1487827847","https://openalex.org/W1534151975","https://openalex.org/W1535641839","https://openalex.org/W1546952499","https://openalex.org/W1595961914","https://openalex.org/W1621975707","https://openalex.org/W1642162696","https://openalex.org/W1757722203","https://openalex.org/W1758395617","https://openalex.org/W1964491374","https://openalex.org/W1966279131","https://openalex.org/W1967190757","https://openalex.org/W1970556744","https://openalex.org/W1977340584","https://openalex.org/W1985591441","https://openalex.org/W1985695385","https://openalex.org/W1987816069","https://openalex.org/W1990144966","https://openalex.org/W1993170943","https://openalex.org/W1994656497","https://openalex.org/W1996529795","https://openalex.org/W1998767819","https://openalex.org/W2003835605","https://openalex.org/W2008818443","https://openalex.org/W2010707723","https://openalex.org/W2015854959","https://openalex.org/W2019801716","https://openalex.org/W2020859582","https://openalex.org/W2024858956","https://openalex.org/W2024963167","https://openalex.org/W2034250960","https://openalex.org/W2034285024","https://openalex.org/W2037261891","https://openalex.org/W2037614307","https://openalex.org/W2038478640","https://openalex.org/W2039760291","https://openalex.org/W2046760236","https://openalex.org/W2054321273","https://openalex.org/W2057012490","https://openalex.org/W2065432632","https://openalex.org/W2070020713","https://openalex.org/W2071828122","https://openalex.org/W2075283200","https://openalex.org/W2075846943","https://openalex.org/W2078116112","https://openalex.org/W2082382448","https://openalex.org/W2087139200","https://openalex.org/W2090846925","https://openalex.org/W2091841926","https://openalex.org/W2092899907","https://openalex.org/W2094678200","https://openalex.org/W2099039198","https://openalex.org/W2100083453","https://openalex.org/W2102992354","https://openalex.org/W2104108767","https://openalex.org/W2108590631","https://openalex.org/W2109521384","https://openalex.org/W2110355460","https://openalex.org/W2111825982","https://openalex.org/W2113004492","https://openalex.org/W2113816218","https://openalex.org/W2115604365","https://openalex.org/W2116324021","https://openalex.org/W2117486132","https://openalex.org/W2118069309","https://openalex.org/W2122638857","https://openalex.org/W2125037436","https://openalex.org/W2126994347","https://openalex.org/W2127844534","https://openalex.org/W2128601422","https://openalex.org/W2129014750","https://openalex.org/W2130410032","https://openalex.org/W2130687290","https://openalex.org/W2131989143","https://openalex.org/W2132105526","https://openalex.org/W2132218677","https://openalex.org/W2132232959","https://openalex.org/W2132992030","https://openalex.org/W2133465414","https://openalex.org/W2136623181","https://openalex.org/W2137970956","https://openalex.org/W2138284860","https://openalex.org/W2139036189","https://openalex.org/W2140703956","https://openalex.org/W2142747156","https://openalex.org/W2143534289","https://openalex.org/W2152274187","https://openalex.org/W2154066017","https://openalex.org/W2155681752","https://openalex.org/W2157239641","https://openalex.org/W2157795344","https://openalex.org/W2158069895","https://openalex.org/W2163855763","https://openalex.org/W2163871517","https://openalex.org/W2165932090","https://openalex.org/W2166927282","https://openalex.org/W2167065750","https://openalex.org/W2168790777","https://openalex.org/W2492353954","https://openalex.org/W2892585814","https://openalex.org/W3195881304","https://openalex.org/W4237293127","https://openalex.org/W4250067018","https://openalex.org/W4285719527","https://openalex.org/W4294107304","https://openalex.org/W4298226842"],"related_works":["https://openalex.org/W1999460937","https://openalex.org/W2133150343","https://openalex.org/W3033588432","https://openalex.org/W2020641517","https://openalex.org/W2216418212","https://openalex.org/W2075919068","https://openalex.org/W2158163767","https://openalex.org/W2137898013","https://openalex.org/W1566184819","https://openalex.org/W2540651481"],"abstract_inverted_index":{"With":[0],"the":[1,13,23,37,59,63,68,102],"emergence":[2],"of":[3,25,70,104],"metabolic":[4,51,72,105],"networks,":[5],"novel":[6,81],"mathematical":[7],"pathway":[8,73,91,116],"concepts":[9],"were":[10],"introduced":[11],"in":[12,48,62,67,79,93],"past":[14,64],"decade,":[15],"aiming":[16],"to":[17,28,36,84],"go":[18],"beyond":[19],"canonical":[20],"maps.":[21],"However,":[22],"use":[24],"network-based":[26,71,115],"pathways":[27,106],"interpret":[29],"'omics'":[30],"data":[31],"has":[32],"been":[33,46],"limited":[34],"owing":[35],"fact":[38],"that":[39],"their":[40],"computation":[41],"has,":[42],"until":[43],"very":[44],"recently,":[45],"infeasible":[47],"large":[49],"(genome-scale)":[50],"networks.":[52],"In":[53,75,96],"this":[54,94],"review":[55,78],"article,":[56],"we":[57,77,98],"describe":[58],"progress":[60],"made":[61],"few":[65],"years":[66],"field":[69],"analysis.":[74],"particular,":[76],"detail":[80],"optimization":[82],"techniques":[83],"compute":[85],"elementary":[86],"flux":[87],"modes,":[88],"an":[89],"important":[90],"concept":[92],"field.":[95],"addition,":[97],"summarize":[99],"approaches":[100],"for":[101],"integration":[103],"with":[107],"gene":[108],"expression":[109],"data,":[110],"discussing":[111],"recent":[112],"advances":[113],"using":[114],"concepts.":[117]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":7}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
