{"id":"https://openalex.org/W2025884426","doi":"https://doi.org/10.1093/bib/bbu004","title":"Comparative analysis of methods for identifying somatic copy number alterations from deep sequencing data","display_name":"Comparative analysis of methods for identifying somatic copy number alterations from deep sequencing data","publication_year":2014,"publication_date":"2014-03-05","ids":{"openalex":"https://openalex.org/W2025884426","doi":"https://doi.org/10.1093/bib/bbu004","mag":"2025884426","pmid":"https://pubmed.ncbi.nlm.nih.gov/24599115"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbu004","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbu004","pdf_url":"https://academic.oup.com/bib/article-pdf/16/2/242/680381/bbu004.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/16/2/242/680381/bbu004.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5040964007","display_name":"Amjad Alkodsi","orcid":"https://orcid.org/0000-0003-3528-4683"},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"A. Alkodsi","raw_affiliation_strings":["Amjad Alkodsi is a P h D student in the Systems Biology Laboratory, Research Programs Unit, Genome-Scale Biology and Institute of Biomedicine, University of Helsinki, Finland","Research Programs Unit"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Amjad Alkodsi is a P h D student in the Systems Biology Laboratory, Research Programs Unit, Genome-Scale Biology and Institute of Biomedicine, University of Helsinki, Finland","institution_ids":["https://openalex.org/I133731052"]},{"raw_affiliation_string":"Research Programs Unit","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008587244","display_name":"Riku Louhimo","orcid":null},"institutions":[{"id":"https://openalex.org/I4210118579","display_name":"Systems Biology Institute","ror":"https://ror.org/02c7akf81","country_code":"JP","type":"nonprofit","lineage":["https://openalex.org/I4210118579"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"R. Louhimo","raw_affiliation_strings":["Riku Louhimo is a P h D student in the Systems Biology Laboratory, Research Programs Unit, Genome-Scale Biology and Institute of Biomedicine, University of Helsinki, Finland","Research Programs Unit"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Riku Louhimo is a P h D student in the Systems Biology Laboratory, Research Programs Unit, Genome-Scale Biology and Institute of Biomedicine, University of Helsinki, Finland","institution_ids":["https://openalex.org/I4210118579"]},{"raw_affiliation_string":"Research Programs Unit","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5033102814","display_name":"Sampsa Hautaniemi","orcid":"https://orcid.org/0000-0002-7749-2694"},"institutions":[{"id":"https://openalex.org/I4210107997","display_name":"Finland University","ror":"https://ror.org/014rks409","country_code":"FI","type":"education","lineage":["https://openalex.org/I4210107997"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"S. Hautaniemi","raw_affiliation_strings":["Sampsa Hautaniemi is the Professor of Systems Biology at the Faculty of Medicine in University of Helsinki, Finland","Medicum"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Sampsa Hautaniemi is the Professor of Systems Biology at the Faculty of Medicine in University of Helsinki, Finland","institution_ids":["https://openalex.org/I4210107997"]},{"raw_affiliation_string":"Medicum","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":3.7561,"has_fulltext":true,"cited_by_count":66,"citation_normalized_percentile":{"value":0.93924715,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"16","issue":"2","first_page":"242","last_page":"254"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/exome-sequencing","display_name":"Exome sequencing","score":0.7708336114883423},{"id":"https://openalex.org/keywords/exome","display_name":"Exome","score":0.6480779647827148},{"id":"https://openalex.org/keywords/copy-number-variation","display_name":"Copy-number variation","score":0.6088705062866211},{"id":"https://openalex.org/keywords/deep-sequencing","display_name":"Deep sequencing","score":0.598730206489563},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5849270224571228},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.5731717348098755},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5522310137748718},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.5515081286430359},{"id":"https://openalex.org/keywords/copy-number-analysis","display_name":"Copy number analysis","score":0.5486425757408142},{"id":"https://openalex.org/keywords/cancer-genome-sequencing","display_name":"Cancer genome sequencing","score":0.5082959532737732},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4733086824417114},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4238972067832947},{"id":"https://openalex.org/keywords/whole-genome-sequencing","display_name":"Whole genome sequencing","score":0.41600149869918823},{"id":"https://openalex.org/keywords/somatic-cell","display_name":"Somatic cell","score":0.41363027691841125},{"id":"https://openalex.org/keywords/mutation","display_name":"Mutation","score":0.25026142597198486},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1991417109966278}],"concepts":[{"id":"https://openalex.org/C16671776","wikidata":"https://www.wikidata.org/wiki/Q5420592","display_name":"Exome sequencing","level":4,"score":0.7708336114883423},{"id":"https://openalex.org/C10590036","wikidata":"https://www.wikidata.org/wiki/Q417664","display_name":"Exome","level":5,"score":0.6480779647827148},{"id":"https://openalex.org/C120821319","wikidata":"https://www.wikidata.org/wiki/Q1501491","display_name":"Copy-number variation","level":4,"score":0.6088705062866211},{"id":"https://openalex.org/C132917006","wikidata":"https://www.wikidata.org/wiki/Q5250436","display_name":"Deep sequencing","level":4,"score":0.598730206489563},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5849270224571228},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.5731717348098755},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5522310137748718},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.5515081286430359},{"id":"https://openalex.org/C166608930","wikidata":"https://www.wikidata.org/wiki/Q5169175","display_name":"Copy number analysis","level":5,"score":0.5486425757408142},{"id":"https://openalex.org/C205270622","wikidata":"https://www.wikidata.org/wiki/Q17082639","display_name":"Cancer genome sequencing","level":5,"score":0.5082959532737732},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4733086824417114},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4238972067832947},{"id":"https://openalex.org/C24432333","wikidata":"https://www.wikidata.org/wiki/Q2068526","display_name":"Whole genome sequencing","level":4,"score":0.41600149869918823},{"id":"https://openalex.org/C134305767","wikidata":"https://www.wikidata.org/wiki/Q725508","display_name":"Somatic cell","level":3,"score":0.41363027691841125},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.25026142597198486},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1991417109966278}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004273","descriptor_name":"DNA, Neoplasm","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004273","descriptor_name":"DNA, Neoplasm","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004273","descriptor_name":"DNA, Neoplasm","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D018628","descriptor_name":"Gene Dosage","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018628","descriptor_name":"Gene Dosage","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018628","descriptor_name":"Gene Dosage","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056915","descriptor_name":"DNA Copy Number Variations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056915","descriptor_name":"DNA Copy Number Variations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056915","descriptor_name":"DNA Copy Number Variations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D059472","descriptor_name":"Exome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059472","descriptor_name":"Exome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059472","descriptor_name":"Exome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbu004","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbu004","pdf_url":"https://academic.oup.com/bib/article-pdf/16/2/242/680381/bbu004.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24599115","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24599115","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.907.6419","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.907.6419","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bib.oxfordjournals.org/content/16/2/242.full.pdf","raw_type":"text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbu004","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbu004","pdf_url":"https://academic.oup.com/bib/article-pdf/16/2/242/680381/bbu004.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2025884426.pdf","grobid_xml":"https://content.openalex.org/works/W2025884426.grobid-xml"},"referenced_works_count":42,"referenced_works":["https://openalex.org/W1484187172","https://openalex.org/W1538419182","https://openalex.org/W1665488395","https://openalex.org/W1968046362","https://openalex.org/W1973978516","https://openalex.org/W1990347487","https://openalex.org/W2002738091","https://openalex.org/W2044499590","https://openalex.org/W2061308322","https://openalex.org/W2069792474","https://openalex.org/W2075304537","https://openalex.org/W2080809959","https://openalex.org/W2085918869","https://openalex.org/W2090144921","https://openalex.org/W2096283457","https://openalex.org/W2097331151","https://openalex.org/W2102140136","https://openalex.org/W2103441770","https://openalex.org/W2104224322","https://openalex.org/W2108234281","https://openalex.org/W2112706474","https://openalex.org/W2116089873","https://openalex.org/W2120950849","https://openalex.org/W2121144826","https://openalex.org/W2121743948","https://openalex.org/W2123402141","https://openalex.org/W2126298009","https://openalex.org/W2126838526","https://openalex.org/W2131088968","https://openalex.org/W2133174470","https://openalex.org/W2133314880","https://openalex.org/W2141119617","https://openalex.org/W2143362349","https://openalex.org/W2144759168","https://openalex.org/W2150264767","https://openalex.org/W2155943701","https://openalex.org/W2156166905","https://openalex.org/W2166542854","https://openalex.org/W2170551349","https://openalex.org/W2255107171","https://openalex.org/W2318933236","https://openalex.org/W4247053599"],"related_works":["https://openalex.org/W1995063759","https://openalex.org/W1804576807","https://openalex.org/W2610790664","https://openalex.org/W1577380053","https://openalex.org/W2890042127","https://openalex.org/W2025884426","https://openalex.org/W2486584072","https://openalex.org/W4379282908","https://openalex.org/W4297038142","https://openalex.org/W4214557503"],"abstract_inverted_index":{"Somatic":[0],"copy-number":[1],"alterations":[2,136],"(SCNAs)":[3],"are":[4,127,142],"an":[5],"important":[6],"type":[7],"of":[8,16,32,47,101,132],"structural":[9],"variation":[10],"affecting":[11],"tumor":[12,90],"pathogenesis.":[13],"Accurate":[14],"detection":[15,83,125],"genomic":[17,41],"regions":[18,28],"with":[19],"SCNAs":[20,63],"is":[21,44],"crucial":[22],"for":[23,105,144],"cancer":[24,33],"genomics":[25],"as":[26],"these":[27],"contain":[29],"likely":[30],"drivers":[31],"development.":[34],"Deep":[35],"sequencing":[36,68,92,103,140],"technology":[37],"provides":[38],"single-nucleotide":[39],"resolution":[40],"data":[42,104,141],"and":[43,66,88,118,137],"considered":[45],"one":[46],"the":[48,99,121,133],"best":[49],"measurement":[50],"technologies":[51],"to":[52,61,129],"detect":[53,62],"SCNAs.":[54],"Although":[55],"several":[56],"algorithms":[57,84,126],"have":[58,79,97],"been":[59,75],"developed":[60],"from":[64],"whole-genome":[65],"whole-exome":[67],"data,":[69],"their":[70],"relative":[71],"performance":[72],"has":[73],"not":[74],"studied.":[76],"Here,":[77],"we":[78,96],"compared":[80],"ten":[81],"SCNA":[82,106,124,145],"in":[85,116],"both":[86],"simulated":[87],"primary":[89],"deep":[91],"data.":[93],"In":[94],"addition,":[95],"evaluated":[98],"applicability":[100],"exome":[102,139],"detection.":[107,146],"Our":[108],"results":[109],"show":[110],"that":[111],"(i)":[112],"clear":[113],"differences":[114],"exist":[115],"sensitivity":[117],"specificity":[119],"between":[120],"algorithms,":[122],"(ii)":[123],"able":[128],"identify":[130],"most":[131],"complex":[134],"chromosomal":[135],"(iii)":[138],"suitable":[143]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":7},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":7},{"year":2015,"cited_by_count":15},{"year":2014,"cited_by_count":7}],"updated_date":"2026-06-17T06:14:20.161405","created_date":"2025-10-10T00:00:00"}
