{"id":"https://openalex.org/W1971985263","doi":"https://doi.org/10.1093/bib/bbt072","title":"Sequence analysis by iterated maps, a review","display_name":"Sequence analysis by iterated maps, a review","publication_year":2013,"publication_date":"2013-10-25","ids":{"openalex":"https://openalex.org/W1971985263","doi":"https://doi.org/10.1093/bib/bbt072","mag":"1971985263","pmid":"https://pubmed.ncbi.nlm.nih.gov/24162172"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbt072","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbt072","pdf_url":"https://academic.oup.com/bib/article-pdf/15/3/369/450331/bbt072.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/15/3/369/450331/bbt072.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103441563","display_name":"Jonas S. Almeida","orcid":null},"institutions":[{"id":"https://openalex.org/I32389192","display_name":"University of Alabama at Birmingham","ror":"https://ror.org/008s83205","country_code":"US","type":"education","lineage":["https://openalex.org/I32389192"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"J. S. Almeida","raw_affiliation_strings":["Division of Informatics, Department of Pathology, University of Alabama at Birmingham, Birmingham, AL, USA. jalmeida@uab.edu","Division of Informatics, Department of Pathology, University of Alabama at Birmingham, Birmingham AL, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Informatics, Department of Pathology, University of Alabama at Birmingham, Birmingham, AL, USA. jalmeida@uab.edu","institution_ids":["https://openalex.org/I32389192"]},{"raw_affiliation_string":"Division of Informatics, Department of Pathology, University of Alabama at Birmingham, Birmingham AL, USA","institution_ids":["https://openalex.org/I32389192"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5103441563"],"corresponding_institution_ids":["https://openalex.org/I32389192"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":0.8257,"has_fulltext":false,"cited_by_count":48,"citation_normalized_percentile":{"value":0.70842459,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"15","issue":"3","first_page":"369","last_page":"375"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9921000003814697,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9902999997138977,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/iterated-function","display_name":"Iterated function","score":0.6707483530044556},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.6665724515914917},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6573472619056702},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.5969417095184326},{"id":"https://openalex.org/keywords/series","display_name":"Series (stratigraphy)","score":0.5861742496490479},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.5644108057022095},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.5024957656860352},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.42548075318336487},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4067501425743103},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2158794403076172},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.10005101561546326},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09843981266021729}],"concepts":[{"id":"https://openalex.org/C140479938","wikidata":"https://www.wikidata.org/wiki/Q5254619","display_name":"Iterated function","level":2,"score":0.6707483530044556},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.6665724515914917},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6573472619056702},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.5969417095184326},{"id":"https://openalex.org/C143724316","wikidata":"https://www.wikidata.org/wiki/Q312468","display_name":"Series (stratigraphy)","level":2,"score":0.5861742496490479},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.5644108057022095},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.5024957656860352},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.42548075318336487},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4067501425743103},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2158794403076172},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.10005101561546326},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09843981266021729},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017421","descriptor_name":"Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017421","descriptor_name":"Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017421","descriptor_name":"Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017421","descriptor_name":"Sequence Analysis","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D017421","descriptor_name":"Sequence Analysis","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D017421","descriptor_name":"Sequence Analysis","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D017709","descriptor_name":"Fractals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017709","descriptor_name":"Fractals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017709","descriptor_name":"Fractals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017711","descriptor_name":"Nonlinear Dynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017711","descriptor_name":"Nonlinear Dynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017711","descriptor_name":"Nonlinear Dynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbt072","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbt072","pdf_url":"https://academic.oup.com/bib/article-pdf/15/3/369/450331/bbt072.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24162172","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24162172","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:4017330","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4017330","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbt072","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbt072","pdf_url":"https://academic.oup.com/bib/article-pdf/15/3/369/450331/bbt072.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","score":0.7400000095367432,"display_name":"Quality Education"}],"awards":[{"id":"https://openalex.org/G3144121387","display_name":null,"funder_award_id":"5UL1 RR025777-03","funder_id":"https://openalex.org/F4320337375","funder_display_name":"National Center for Research Resources"}],"funders":[{"id":"https://openalex.org/F4320337375","display_name":"National Center for Research Resources","ror":"https://ror.org/04pw6fb54"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1971985263.pdf"},"referenced_works_count":60,"referenced_works":["https://openalex.org/W1485293642","https://openalex.org/W1493769974","https://openalex.org/W1595653788","https://openalex.org/W1810898805","https://openalex.org/W1969234006","https://openalex.org/W1969324628","https://openalex.org/W1970157853","https://openalex.org/W1981343642","https://openalex.org/W1983087557","https://openalex.org/W1993977866","https://openalex.org/W1998466008","https://openalex.org/W2008879046","https://openalex.org/W2009570821","https://openalex.org/W2011398297","https://openalex.org/W2012359195","https://openalex.org/W2016007423","https://openalex.org/W2027378283","https://openalex.org/W2032845906","https://openalex.org/W2034728773","https://openalex.org/W2038221235","https://openalex.org/W2038399775","https://openalex.org/W2041048505","https://openalex.org/W2051039710","https://openalex.org/W2055043387","https://openalex.org/W2055425683","https://openalex.org/W2055578343","https://openalex.org/W2057461700","https://openalex.org/W2058271398","https://openalex.org/W2068308871","https://openalex.org/W2070922095","https://openalex.org/W2071207973","https://openalex.org/W2078206416","https://openalex.org/W2081261120","https://openalex.org/W2094159932","https://openalex.org/W2094519647","https://openalex.org/W2098038521","https://openalex.org/W2098475202","https://openalex.org/W2105805010","https://openalex.org/W2109722477","https://openalex.org/W2110887002","https://openalex.org/W2111588838","https://openalex.org/W2114293764","https://openalex.org/W2117042439","https://openalex.org/W2119180969","https://openalex.org/W2119488386","https://openalex.org/W2121762798","https://openalex.org/W2129103781","https://openalex.org/W2134325994","https://openalex.org/W2150039113","https://openalex.org/W2150774511","https://openalex.org/W2151831732","https://openalex.org/W2160614196","https://openalex.org/W2165927303","https://openalex.org/W2171963266","https://openalex.org/W2173213060","https://openalex.org/W2177218873","https://openalex.org/W2189550636","https://openalex.org/W2984082012","https://openalex.org/W4210962885","https://openalex.org/W4236236547"],"related_works":["https://openalex.org/W3103325625","https://openalex.org/W1486898455","https://openalex.org/W2389214306","https://openalex.org/W2965083567","https://openalex.org/W4235240664","https://openalex.org/W1838576100","https://openalex.org/W2757182831","https://openalex.org/W2095886385","https://openalex.org/W2375527395","https://openalex.org/W2088134950"],"abstract_inverted_index":{"Among":[0],"alignment-free":[1,30,82],"methods,":[2],"Iterated":[3],"Maps":[4],"(IMs)":[5],"are":[6,12],"on":[7],"a":[8,114,183,189,224,229],"particular":[9],"extreme:":[10],"they":[11],"also":[13,26],"scale":[14],"free":[15],"(order":[16],"free).":[17],"The":[18,63,89,124,142,216],"use":[19,53,103,159],"of":[20,39,43,54,60,68,76,94,104,126,136,163,171,178,205,208,226],"IMs":[21,227],"for":[22,149,160,223],"sequence":[23,213],"analysis":[24,66,93,214],"is":[25,71,188],"distinct":[27],"from":[28],"other":[29],"methodologies":[31],"in":[32,35,57,84,118,157,167,173,193,202,232],"being":[33],"rooted":[34],"statistical":[36],"mechanics":[37],"instead":[38],"computational":[40,185,203],"linguistics.":[41],"Both":[42],"these":[44],"roots":[45],"go":[46,130],"back":[47],"over":[48,210],"two":[49],"decades":[50],"to":[51,107,219],"the":[52,58,69,74,77,92,100,133,137,168,176,194],"fractal":[55],"geometry":[56],"characterization":[59],"phase-space":[61],"representations.":[62],"time":[64],"series":[65,98,109],"origin":[67],"field":[70],"betrayed":[72],"by":[73,131],"title":[75],"manuscript":[78],"that":[79,127],"started":[80],"this":[81,146],"subdomain":[83],"1990,":[85],"'Chaos":[86],"Game":[87],"Representation'.":[88],"clash":[90],"between":[91],"sequences":[95],"as":[96,152,154,182],"continuous":[97],"and":[99,180],"better":[101],"established":[102],"Markovian":[105],"approaches":[106],"discrete":[108],"was":[110,140],"almost":[111],"immediate,":[112],"with":[113,175,228],"defining":[115],"critique":[116],"published":[117],"same":[119],"journal":[120],"2":[121],"years":[122],"later.":[123],"rest":[125],"decade":[128,144],"would":[129],"before":[132],"scale-free":[134],"nature":[135],"IM":[138,195],"space":[139],"uncovered.":[141],"ensuing":[143],"saw":[145],"scalability":[147],"generalized":[148],"non-genomic":[150],"alphabets":[151],"well":[153],"an":[155],"interest":[156],"its":[158],"graphic":[161],"representation":[162],"biological":[164],"sequences.":[165],"Finally,":[166],"past":[169],"couple":[170],"years,":[172],"step":[174],"emergence":[177],"BigData":[179],"MapReduce":[181],"new":[184],"paradigm,":[186],"there":[187],"surprising":[190],"third":[191],"act":[192],"story.":[196],"Multiple":[197],"reports":[198],"have":[199],"described":[200],"gains":[201],"efficiency":[204],"multiple":[206],"orders":[207],"magnitude":[209],"more":[211],"conventional":[212],"methodologies.":[215],"stage":[217],"appears":[218],"be":[220],"now":[221],"set":[222],"recasting":[225],"central":[230],"role":[231],"processing":[233],"nextgen":[234],"sequencing":[235],"results.":[236]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":8},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":8},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":3}],"updated_date":"2026-07-29T09:40:50.615796","created_date":"2025-10-10T00:00:00"}
