{"id":"https://openalex.org/W2080581393","doi":"https://doi.org/10.1093/bib/bbt071","title":"Pathogenicity phenomena in three model systems: from network mining to emerging system-level properties","display_name":"Pathogenicity phenomena in three model systems: from network mining to emerging system-level properties","publication_year":2013,"publication_date":"2013-10-07","ids":{"openalex":"https://openalex.org/W2080581393","doi":"https://doi.org/10.1093/bib/bbt071","mag":"2080581393","pmid":"https://pubmed.ncbi.nlm.nih.gov/24106130"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbt071","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbt071","pdf_url":"https://academic.oup.com/bib/article-pdf/16/1/169/5027542/bbt071.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/16/1/169/5027542/bbt071.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5111835109","display_name":"N. C. Santos","orcid":null},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"N. C. Santos","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100751103","display_name":"Maria Ol\u00edvia Pereira","orcid":"https://orcid.org/0000-0002-4307-3985"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"M. O. Pereira","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5033016354","display_name":"An\u00e1lia Louren\u00e7o","orcid":"https://orcid.org/0000-0001-8401-5362"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"A. Lourenco","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5111835109"],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":0.3502,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.61987004,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"16","issue":"1","first_page":"169","last_page":"182"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10150","display_name":"Antifungal resistance and susceptibility","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10150","display_name":"Antifungal resistance and susceptibility","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10593","display_name":"Bacterial biofilms and quorum sensing","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":0.9923999905586243,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/quorum-sensing","display_name":"Quorum sensing","score":0.6894108057022095},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6842333078384399},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.6089940071105957},{"id":"https://openalex.org/keywords/repurposing","display_name":"Repurposing","score":0.604117751121521},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5722624659538269},{"id":"https://openalex.org/keywords/pseudomonas-aeruginosa","display_name":"Pseudomonas aeruginosa","score":0.5384914875030518},{"id":"https://openalex.org/keywords/biofilm","display_name":"Biofilm","score":0.5363401770591736},{"id":"https://openalex.org/keywords/pathogen","display_name":"Pathogen","score":0.5129813551902771},{"id":"https://openalex.org/keywords/pathogenicity","display_name":"Pathogenicity","score":0.48736101388931274},{"id":"https://openalex.org/keywords/drug-repositioning","display_name":"Drug repositioning","score":0.4596080780029297},{"id":"https://openalex.org/keywords/microbiology","display_name":"Microbiology","score":0.45699140429496765},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.4250248074531555},{"id":"https://openalex.org/keywords/candida-albicans","display_name":"Candida albicans","score":0.4245005249977112},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.4183204770088196},{"id":"https://openalex.org/keywords/bacteria","display_name":"Bacteria","score":0.274646520614624},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.21999874711036682},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.16915452480316162},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.1582663357257843},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.09354981780052185},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.09345880150794983}],"concepts":[{"id":"https://openalex.org/C118687296","wikidata":"https://www.wikidata.org/wiki/Q905754","display_name":"Quorum sensing","level":4,"score":0.6894108057022095},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6842333078384399},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.6089940071105957},{"id":"https://openalex.org/C519536355","wikidata":"https://www.wikidata.org/wiki/Q21021151","display_name":"Repurposing","level":2,"score":0.604117751121521},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5722624659538269},{"id":"https://openalex.org/C2777637488","wikidata":"https://www.wikidata.org/wiki/Q31856","display_name":"Pseudomonas aeruginosa","level":3,"score":0.5384914875030518},{"id":"https://openalex.org/C58123911","wikidata":"https://www.wikidata.org/wiki/Q467410","display_name":"Biofilm","level":3,"score":0.5363401770591736},{"id":"https://openalex.org/C2776460866","wikidata":"https://www.wikidata.org/wiki/Q170065","display_name":"Pathogen","level":2,"score":0.5129813551902771},{"id":"https://openalex.org/C64502627","wikidata":"https://www.wikidata.org/wiki/Q170065","display_name":"Pathogenicity","level":2,"score":0.48736101388931274},{"id":"https://openalex.org/C103637391","wikidata":"https://www.wikidata.org/wiki/Q5308921","display_name":"Drug repositioning","level":3,"score":0.4596080780029297},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.45699140429496765},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.4250248074531555},{"id":"https://openalex.org/C2780917455","wikidata":"https://www.wikidata.org/wiki/Q310443","display_name":"Candida albicans","level":2,"score":0.4245005249977112},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.4183204770088196},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.274646520614624},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.21999874711036682},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.16915452480316162},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.1582663357257843},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.09354981780052185},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09345880150794983},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D002176","descriptor_name":"Candida albicans","qualifier_ui":"Q000472","qualifier_name":"pathogenicity","is_major_topic":false},{"descriptor_ui":"D002176","descriptor_name":"Candida albicans","qualifier_ui":"Q000472","qualifier_name":"pathogenicity","is_major_topic":false},{"descriptor_ui":"D002176","descriptor_name":"Candida albicans","qualifier_ui":"Q000472","qualifier_name":"pathogenicity","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011550","descriptor_name":"Pseudomonas aeruginosa","qualifier_ui":"Q000472","qualifier_name":"pathogenicity","is_major_topic":false},{"descriptor_ui":"D011550","descriptor_name":"Pseudomonas aeruginosa","qualifier_ui":"Q000472","qualifier_name":"pathogenicity","is_major_topic":false},{"descriptor_ui":"D011550","descriptor_name":"Pseudomonas aeruginosa","qualifier_ui":"Q000472","qualifier_name":"pathogenicity","is_major_topic":false},{"descriptor_ui":"D013211","descriptor_name":"Staphylococcus aureus","qualifier_ui":"Q000472","qualifier_name":"pathogenicity","is_major_topic":false},{"descriptor_ui":"D013211","descriptor_name":"Staphylococcus aureus","qualifier_ui":"Q000472","qualifier_name":"pathogenicity","is_major_topic":false},{"descriptor_ui":"D013211","descriptor_name":"Staphylococcus aureus","qualifier_ui":"Q000472","qualifier_name":"pathogenicity","is_major_topic":false},{"descriptor_ui":"D014774","descriptor_name":"Virulence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014774","descriptor_name":"Virulence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014774","descriptor_name":"Virulence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018441","descriptor_name":"Biofilms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018441","descriptor_name":"Biofilms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018441","descriptor_name":"Biofilms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bib/bbt071","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbt071","pdf_url":"https://academic.oup.com/bib/article-pdf/16/1/169/5027542/bbt071.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24106130","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24106130","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:repositorium.sdum.uminho.pt:1822/33445","is_oa":false,"landing_page_url":"http://hdl.handle.net/1822/33445","pdf_url":null,"source":{"id":"https://openalex.org/S4306400354","display_name":"Reposit\u00f3riUM (Universidade do Minho)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I99682543","host_organization_name":"University of Minho","host_organization_lineage":["https://openalex.org/I99682543"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":null},{"id":"pmh:oai:repositorium.uminho.pt:1822/33445","is_oa":false,"landing_page_url":"https://hdl.handle.net/1822/33445","pdf_url":null,"source":{"id":"https://openalex.org/S4306402433","display_name":"Portuguese National Funding Agency for Science, Research and Technology (RCAAP Project by FCT)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"journal article"}],"best_oa_location":{"id":"doi:10.1093/bib/bbt071","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbt071","pdf_url":"https://academic.oup.com/bib/article-pdf/16/1/169/5027542/bbt071.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2080581393.pdf","grobid_xml":"https://content.openalex.org/works/W2080581393.grobid-xml"},"referenced_works_count":185,"referenced_works":["https://openalex.org/W34783348","https://openalex.org/W48452310","https://openalex.org/W55039786","https://openalex.org/W361121536","https://openalex.org/W1491668332","https://openalex.org/W1503938960","https://openalex.org/W1514441167","https://openalex.org/W1520746228","https://openalex.org/W1535444764","https://openalex.org/W1541663010","https://openalex.org/W1662425722","https://openalex.org/W1782352922","https://openalex.org/W1858850920","https://openalex.org/W1898948095","https://openalex.org/W1963845190","https://openalex.org/W1964344318","https://openalex.org/W1966141113","https://openalex.org/W1970959262","https://openalex.org/W1973843350","https://openalex.org/W1975675040","https://openalex.org/W1978041873","https://openalex.org/W1978245418","https://openalex.org/W1980587680","https://openalex.org/W1984602113","https://openalex.org/W1985213868","https://openalex.org/W1988103622","https://openalex.org/W1988811050","https://openalex.org/W1989874901","https://openalex.org/W1991106306","https://openalex.org/W1991488616","https://openalex.org/W1992458668","https://openalex.org/W1992619479","https://openalex.org/W1994576782","https://openalex.org/W1997051813","https://openalex.org/W1997320565","https://openalex.org/W1998767819","https://openalex.org/W2000860171","https://openalex.org/W2003516452","https://openalex.org/W2007451007","https://openalex.org/W2008274231","https://openalex.org/W2008632223","https://openalex.org/W2008997176","https://openalex.org/W2009682500","https://openalex.org/W2011282364","https://openalex.org/W2012279651","https://openalex.org/W2013469333","https://openalex.org/W2014004132","https://openalex.org/W2015593638","https://openalex.org/W2017349971","https://openalex.org/W2018740272","https://openalex.org/W2018751081","https://openalex.org/W2020653359","https://openalex.org/W2021225422","https://openalex.org/W2025737378","https://openalex.org/W2027021703","https://openalex.org/W2029205241","https://openalex.org/W2029490885","https://openalex.org/W2030096585","https://openalex.org/W2031195737","https://openalex.org/W2031849942","https://openalex.org/W2032249441","https://openalex.org/W2032968787","https://openalex.org/W2034375284","https://openalex.org/W2034700901","https://openalex.org/W2039748234","https://openalex.org/W2040011481","https://openalex.org/W2042242664","https://openalex.org/W2043977568","https://openalex.org/W2045383075","https://openalex.org/W2049505636","https://openalex.org/W2049876083","https://openalex.org/W2052375196","https://openalex.org/W2053305756","https://openalex.org/W2055016234","https://openalex.org/W2055792849","https://openalex.org/W2057583358","https://openalex.org/W2059325738","https://openalex.org/W2059546521","https://openalex.org/W2063642998","https://openalex.org/W2064086754","https://openalex.org/W2065157216","https://openalex.org/W2066918275","https://openalex.org/W2068373367","https://openalex.org/W2071771392","https://openalex.org/W2071865996","https://openalex.org/W2072289081","https://openalex.org/W2072967720","https://openalex.org/W2073751188","https://openalex.org/W2075093963","https://openalex.org/W2075283200","https://openalex.org/W2076583650","https://openalex.org/W2080124756","https://openalex.org/W2083051190","https://openalex.org/W2083233467","https://openalex.org/W2085245980","https://openalex.org/W2088590769","https://openalex.org/W2088701712","https://openalex.org/W2089940194","https://openalex.org/W2093341936","https://openalex.org/W2094183205","https://openalex.org/W2094739913","https://openalex.org/W2094953050","https://openalex.org/W2099198339","https://openalex.org/W2099830835","https://openalex.org/W2101051206","https://openalex.org/W2101730352","https://openalex.org/W2101940366","https://openalex.org/W2102162073","https://openalex.org/W2102837962","https://openalex.org/W2102884567","https://openalex.org/W2103017472","https://openalex.org/W2105924489","https://openalex.org/W2109384743","https://openalex.org/W2109433105","https://openalex.org/W2110892287","https://openalex.org/W2113365252","https://openalex.org/W2114034054","https://openalex.org/W2114372600","https://openalex.org/W2115442028","https://openalex.org/W2115701239","https://openalex.org/W2116185344","https://openalex.org/W2116398954","https://openalex.org/W2116607488","https://openalex.org/W2118258530","https://openalex.org/W2119625211","https://openalex.org/W2122863289","https://openalex.org/W2123280311","https://openalex.org/W2123311799","https://openalex.org/W2124790912","https://openalex.org/W2125283826","https://openalex.org/W2125359633","https://openalex.org/W2125479651","https://openalex.org/W2126467271","https://openalex.org/W2127224553","https://openalex.org/W2127319957","https://openalex.org/W2127872845","https://openalex.org/W2129723345","https://openalex.org/W2129887623","https://openalex.org/W2130479394","https://openalex.org/W2130687290","https://openalex.org/W2131924932","https://openalex.org/W2133425351","https://openalex.org/W2136723682","https://openalex.org/W2137052779","https://openalex.org/W2140405224","https://openalex.org/W2141032537","https://openalex.org/W2142181258","https://openalex.org/W2142792710","https://openalex.org/W2143491155","https://openalex.org/W2144035662","https://openalex.org/W2145952139","https://openalex.org/W2147472054","https://openalex.org/W2147834895","https://openalex.org/W2148502410","https://openalex.org/W2149022159","https://openalex.org/W2149109097","https://openalex.org/W2149353640","https://openalex.org/W2149684014","https://openalex.org/W2152193238","https://openalex.org/W2152269861","https://openalex.org/W2152849400","https://openalex.org/W2153921000","https://openalex.org/W2154811078","https://openalex.org/W2155568318","https://openalex.org/W2155991374","https://openalex.org/W2156183380","https://openalex.org/W2157467689","https://openalex.org/W2162237022","https://openalex.org/W2162821262","https://openalex.org/W2163841023","https://openalex.org/W2163945813","https://openalex.org/W2165253681","https://openalex.org/W2165335121","https://openalex.org/W2166135736","https://openalex.org/W2166167624","https://openalex.org/W2169777166","https://openalex.org/W2170298003","https://openalex.org/W2170382524","https://openalex.org/W2171546784","https://openalex.org/W2171977772","https://openalex.org/W2211093145","https://openalex.org/W2320482245","https://openalex.org/W4233334497","https://openalex.org/W4238101851","https://openalex.org/W4255855797"],"related_works":["https://openalex.org/W2899096130","https://openalex.org/W3190782215","https://openalex.org/W2902729297","https://openalex.org/W3110500039","https://openalex.org/W4255531208","https://openalex.org/W4206422705","https://openalex.org/W4320009247","https://openalex.org/W4226161264","https://openalex.org/W3186872001","https://openalex.org/W3174741986"],"abstract_inverted_index":{"Understanding":[0],"the":[1,33,96,111,118,121,126,132,144,147],"interconnections":[2],"of":[3,52,95,120,139,146,152],"microbial":[4,65],"pathogenicity":[5],"phenomena,":[6],"such":[7],"as":[8],"biofilm":[9,159],"formation,":[10],"quorum":[11],"sensing":[12],"and":[13,29,55,61,88,105,114,131,161],"antimicrobial":[14,164],"resistance,":[15],"is":[16],"a":[17,78],"tremendous":[18],"open":[19],"challenge":[20],"for":[21,117],"biomedical":[22],"research.":[23,84],"Progress":[24],"made":[25],"by":[26],"wet-lab":[27],"researchers":[28],"bioinformaticians":[30],"in":[31,64,73,82,158],"understanding":[32],"underlying":[34],"regulatory":[35,101],"phenomena":[36],"has":[37],"been":[38],"significant,":[39],"with":[40],"converging":[41,149],"evidence":[42],"from":[43],"multiple":[44],"high-throughput":[45],"technologies.":[46],"Notably,":[47],"network":[48],"reconstructions":[49],"are":[50],"already":[51],"considerable":[53],"size":[54],"quality,":[56],"tackling":[57],"both":[58],"intracellular":[59],"regulation":[60],"signal":[62],"mediation":[63],"infection.":[66],"Therefore,":[67],"it":[68],"stands":[69],"to":[70,98],"reason":[71],"that":[72],"silico":[74],"investigations":[75],"would":[76],"play":[77],"more":[79],"active":[80],"part":[81],"this":[83],"Drug":[85],"target":[86],"identification":[87],"drug":[89],"repurposing":[90],"could":[91],"take":[92],"much":[93],"advantage":[94],"ability":[97],"simulate":[99],"pathogen":[100,106],"systems,":[102],"host-pathogen":[103],"interactions":[104],"cross-talking.":[107],"Here,":[108],"we":[109],"review":[110,148],"bioinformatics":[112],"resources":[113],"tools":[115],"available":[116],"study":[119],"gram-negative":[122],"bacterium":[123,128],"Pseudomonas":[124],"aeruginosa,":[125],"gram-positive":[127],"Staphylococcus":[129],"aureus":[130],"fungal":[133],"species":[134],"Candida":[135],"albicans.":[136],"The":[137],"choice":[138],"these":[140],"three":[141],"microorganisms":[142],"fits":[143],"rationale":[145],"into":[150],"pathogens":[151],"great":[153],"clinical":[154],"importance,":[155],"which":[156],"thrive":[157],"consortia":[160],"manifest":[162],"growing":[163],"resistance.":[165]},"counts_by_year":[{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-05-18T08:16:58.900851","created_date":"2025-10-10T00:00:00"}
