{"id":"https://openalex.org/W2128629540","doi":"https://doi.org/10.1093/bib/bbt065","title":"Teaching the ABCs of bioinformatics: a brief introduction to the Applied Bioinformatics Course","display_name":"Teaching the ABCs of bioinformatics: a brief introduction to the Applied Bioinformatics Course","publication_year":2013,"publication_date":"2013-09-05","ids":{"openalex":"https://openalex.org/W2128629540","doi":"https://doi.org/10.1093/bib/bbt065","mag":"2128629540","pmid":"https://pubmed.ncbi.nlm.nih.gov/24008274"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbt065","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbt065","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4239802","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102864254","display_name":"Juan Luo","orcid":"https://orcid.org/0000-0003-3775-9187"},"institutions":[{"id":"https://openalex.org/I4391767842","display_name":"State Key Laboratory of Protein and Plant Gene Research","ror":"https://ror.org/05xbqrp21","country_code":null,"type":"facility","lineage":["https://openalex.org/I20231570","https://openalex.org/I4391767842"]},{"id":"https://openalex.org/I4210112230","display_name":"State Key Laboratory of Plant Genomics","ror":"https://ror.org/0205xz563","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210112230"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"J. Luo","raw_affiliation_strings":["Center for Bioinformatics, Peking University, Beijing 100871, P.R. China","State Key Laboratory of Protein and Plant Gene Research, College of Life Sciences and"],"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics, Peking University, Beijing 100871, P.R. China","institution_ids":[]},{"raw_affiliation_string":"State Key Laboratory of Protein and Plant Gene Research, College of Life Sciences and","institution_ids":["https://openalex.org/I4210112230","https://openalex.org/I4391767842"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5102864254"],"corresponding_institution_ids":["https://openalex.org/I4210112230","https://openalex.org/I4391767842"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":0.298,"has_fulltext":false,"cited_by_count":9,"citation_normalized_percentile":{"value":0.62817896,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"15","issue":"6","first_page":"1004","last_page":"1013"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.963100016117096,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9513000249862671,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/course","display_name":"Course (navigation)","score":0.6562285423278809},{"id":"https://openalex.org/keywords/online-teaching","display_name":"Online teaching","score":0.5306761860847473},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5196184515953064},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.5109423995018005},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.388725221157074},{"id":"https://openalex.org/keywords/mathematics-education","display_name":"Mathematics education","score":0.3388460874557495},{"id":"https://openalex.org/keywords/medical-education","display_name":"Medical education","score":0.32828229665756226},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3035428524017334},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2220461070537567},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.18910542130470276},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.1633557677268982},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.1392037272453308}],"concepts":[{"id":"https://openalex.org/C2777552389","wikidata":"https://www.wikidata.org/wiki/Q1962728","display_name":"Course (navigation)","level":2,"score":0.6562285423278809},{"id":"https://openalex.org/C3020513065","wikidata":"https://www.wikidata.org/wiki/Q1068473","display_name":"Online teaching","level":2,"score":0.5306761860847473},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5196184515953064},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.5109423995018005},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.388725221157074},{"id":"https://openalex.org/C145420912","wikidata":"https://www.wikidata.org/wiki/Q853077","display_name":"Mathematics education","level":1,"score":0.3388460874557495},{"id":"https://openalex.org/C509550671","wikidata":"https://www.wikidata.org/wiki/Q126945","display_name":"Medical education","level":1,"score":0.32828229665756226},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3035428524017334},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2220461070537567},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.18910542130470276},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.1633557677268982},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.1392037272453308},{"id":"https://openalex.org/C146978453","wikidata":"https://www.wikidata.org/wiki/Q3798668","display_name":"Aerospace engineering","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002681","descriptor_name":"China","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002681","descriptor_name":"China","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002681","descriptor_name":"China","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003479","descriptor_name":"Curriculum","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003479","descriptor_name":"Curriculum","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003479","descriptor_name":"Curriculum","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004500","descriptor_name":"Education, Graduate","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004500","descriptor_name":"Education, Graduate","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004500","descriptor_name":"Education, Graduate","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005777","descriptor_name":"Geese","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005777","descriptor_name":"Geese","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005777","descriptor_name":"Geese","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006454","descriptor_name":"Hemoglobins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006454","descriptor_name":"Hemoglobins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006454","descriptor_name":"Hemoglobins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014495","descriptor_name":"Universities","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014495","descriptor_name":"Universities","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014495","descriptor_name":"Universities","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018749","descriptor_name":"RNA, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018749","descriptor_name":"RNA, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018749","descriptor_name":"RNA, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false},{"descriptor_ui":"D023741","descriptor_name":"Takifugu","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D023741","descriptor_name":"Takifugu","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D023741","descriptor_name":"Takifugu","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D057386","descriptor_name":"Search Engine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057386","descriptor_name":"Search Engine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057386","descriptor_name":"Search Engine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbt065","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbt065","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24008274","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24008274","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:4239802","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4239802","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:4239802","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4239802","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":21,"referenced_works":["https://openalex.org/W1585779470","https://openalex.org/W1592614241","https://openalex.org/W1979019747","https://openalex.org/W1996423252","https://openalex.org/W2005308099","https://openalex.org/W2015642465","https://openalex.org/W2053568974","https://openalex.org/W2054493178","https://openalex.org/W2059276386","https://openalex.org/W2067947995","https://openalex.org/W2101588822","https://openalex.org/W2110899053","https://openalex.org/W2125476159","https://openalex.org/W2154871726","https://openalex.org/W2156090412","https://openalex.org/W2156545100","https://openalex.org/W2158050722","https://openalex.org/W2168736003","https://openalex.org/W2281739452","https://openalex.org/W4205911826","https://openalex.org/W4248317602"],"related_works":["https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W1871685927","https://openalex.org/W2384344023","https://openalex.org/W2361777686","https://openalex.org/W2369866024","https://openalex.org/W2388672873","https://openalex.org/W2375804900","https://openalex.org/W2371719660","https://openalex.org/W2359625913"],"abstract_inverted_index":{"With":[0,89],"the":[1,4,7,37,47,51,58,94,97,102,106,111,119,125,143],"development":[2],"of":[3,9,22,54,96,105,118],"Internet":[5],"and":[6,50,142,156],"growth":[8],"online":[10,73,144],"resources,":[11],"bioinformatics":[12,74,151],"training":[13],"for":[14,57],"wet-lab":[15],"biologists":[16],"became":[17],"necessary":[18],"as":[19],"a":[20,28,64,90],"part":[21],"their":[23,82],"education.":[24],"This":[25],"article":[26],"describes":[27],"one-semester":[29],"course":[30,67,107,120],"'Applied":[31],"Bioinformatics":[32],"Course'":[33],"(ABC,":[34],"http://abc.cbi.pku.edu.cn/)":[35],"that":[36],"author":[38,135],"has":[39],"been":[40],"teaching":[41,103,140,145],"to":[42,68,71,76,81,93,113,127,137],"biological":[43,78],"graduate":[44],"students":[45,70],"at":[46],"Peking":[48],"University":[49],"Chinese":[52],"Academy":[53],"Agricultural":[55],"Sciences":[56],"past":[59],"13":[60],"years.":[61],"ABC":[62],"is":[63],"hands-on":[65],"practical":[66],"teach":[69],"use":[72],"resources":[75],"solve":[77],"problems":[79],"related":[80],"ongoing":[83],"research":[84],"projects":[85],"in":[86,110,124,150,154],"molecular":[87],"biology.":[88],"brief":[91],"introduction":[92],"background":[95],"course,":[98],"detailed":[99],"information":[100],"about":[101],"strategies":[104],"are":[108,121],"outlined":[109],"'How":[112],"teach'":[114,128],"section.":[115],"The":[116,134],"contents":[117],"briefly":[122],"described":[123],"'What":[126],"section":[129],"with":[130,147],"some":[131],"real":[132],"examples.":[133],"wishes":[136],"share":[138],"his":[139],"experiences":[141],"materials":[146],"colleagues":[148],"working":[149],"education":[152],"both":[153],"local":[155],"international":[157],"universities.":[158]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2018,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2014,"cited_by_count":1}],"updated_date":"2026-03-10T16:38:18.471706","created_date":"2025-10-10T00:00:00"}
