{"id":"https://openalex.org/W2165390431","doi":"https://doi.org/10.1093/bib/bbt062","title":"A comparative evaluation on prediction methods of nucleosome positioning","display_name":"A comparative evaluation on prediction methods of nucleosome positioning","publication_year":2013,"publication_date":"2013-09-10","ids":{"openalex":"https://openalex.org/W2165390431","doi":"https://doi.org/10.1093/bib/bbt062","mag":"2165390431","pmid":"https://pubmed.ncbi.nlm.nih.gov/24023366"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbt062","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbt062","pdf_url":"https://academic.oup.com/bib/article-pdf/15/6/1014/433293/bbt062.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/15/6/1014/433293/bbt062.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100387512","display_name":"Hui Liu","orcid":"https://orcid.org/0000-0001-7158-913X"},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]},{"id":"https://openalex.org/I4210144214","display_name":"Jiangsu University of Technology","ror":"https://ror.org/04jabhf80","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210144214"]},{"id":"https://openalex.org/I4210153482","display_name":"Changzhou University","ror":"https://ror.org/04ymgwq66","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210153482"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"H. Liu","raw_affiliation_strings":["Hui Liu is an assistant professor of Changzhou University, Jiangsu, China. His research interests are computational biology and machine learning","School of Computer Science, Fudan University, Shanghai, China","professor of Changzhou University, Jiangsu, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hui Liu is an assistant professor of Changzhou University, Jiangsu, China. His research interests are computational biology and machine learning","institution_ids":["https://openalex.org/I4210153482"]},{"raw_affiliation_string":"School of Computer Science, Fudan University, Shanghai, China","institution_ids":["https://openalex.org/I24943067"]},{"raw_affiliation_string":"professor of Changzhou University, Jiangsu, China","institution_ids":["https://openalex.org/I4210144214","https://openalex.org/I4210153482"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100422042","display_name":"Rui Zhang","orcid":"https://orcid.org/0000-0002-4003-0015"},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]},{"id":"https://openalex.org/I4210144214","display_name":"Jiangsu University of Technology","ror":"https://ror.org/04jabhf80","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210144214"]},{"id":"https://openalex.org/I4210153482","display_name":"Changzhou University","ror":"https://ror.org/04ymgwq66","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210153482"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"R. Zhang","raw_affiliation_strings":["Ruichang Zhang is a Master student at School of Computer Science, Fudan University, Shanghai, China. His research interests include data mining and bioinformatics","School of Computer Science, Fudan University, Shanghai, China","professor of Changzhou University, Jiangsu, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Ruichang Zhang is a Master student at School of Computer Science, Fudan University, Shanghai, China. His research interests include data mining and bioinformatics","institution_ids":["https://openalex.org/I24943067"]},{"raw_affiliation_string":"School of Computer Science, Fudan University, Shanghai, China","institution_ids":["https://openalex.org/I24943067"]},{"raw_affiliation_string":"professor of Changzhou University, Jiangsu, China","institution_ids":["https://openalex.org/I4210144214","https://openalex.org/I4210153482"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031748715","display_name":"Wenwei Xiong","orcid":"https://orcid.org/0000-0002-1790-7384"},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]},{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]},{"id":"https://openalex.org/I4210144214","display_name":"Jiangsu University of Technology","ror":"https://ror.org/04jabhf80","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210144214"]},{"id":"https://openalex.org/I4210153482","display_name":"Changzhou University","ror":"https://ror.org/04ymgwq66","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210153482"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"W. Xiong","raw_affiliation_strings":["Wei Xiong is a PhD student at School of Computer Science, Fudan University, Shanghai, China. His research interests include protein interaction network and data mining","Department of Computer Science and Technology, Tongji University, Shanghai, China","professor of Changzhou University, Jiangsu, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Wei Xiong is a PhD student at School of Computer Science, Fudan University, Shanghai, China. His research interests include protein interaction network and data mining","institution_ids":["https://openalex.org/I24943067"]},{"raw_affiliation_string":"Department of Computer Science and Technology, Tongji University, Shanghai, China","institution_ids":["https://openalex.org/I116953780"]},{"raw_affiliation_string":"professor of Changzhou University, Jiangsu, China","institution_ids":["https://openalex.org/I4210144214","https://openalex.org/I4210153482"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086316879","display_name":"Jihong Guan","orcid":"https://orcid.org/0000-0003-2313-7635"},"institutions":[{"id":"https://openalex.org/I4210144214","display_name":"Jiangsu University of Technology","ror":"https://ror.org/04jabhf80","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210144214"]},{"id":"https://openalex.org/I4210148697","display_name":"Institute of Bioinformatics","ror":"https://ror.org/04hqfvm50","country_code":"IN","type":"nonprofit","lineage":["https://openalex.org/I4210148697"]},{"id":"https://openalex.org/I4210153482","display_name":"Changzhou University","ror":"https://ror.org/04ymgwq66","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210153482"]}],"countries":["CN","IN"],"is_corresponding":false,"raw_author_name":"J. Guan","raw_affiliation_strings":["Jihong Guan is a professor at Department of Computer Science and Technology, Tongji University, Shanghai, China. Her research interests include database, data mining, complex networks and bioinformatics","professor of Changzhou University, Jiangsu, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Jihong Guan is a professor at Department of Computer Science and Technology, Tongji University, Shanghai, China. Her research interests include database, data mining, complex networks and bioinformatics","institution_ids":["https://openalex.org/I4210148697"]},{"raw_affiliation_string":"professor of Changzhou University, Jiangsu, China","institution_ids":["https://openalex.org/I4210144214","https://openalex.org/I4210153482"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046280394","display_name":"Zhixiang Zhuang","orcid":"https://orcid.org/0000-0001-7262-3440"},"institutions":[{"id":"https://openalex.org/I4210144214","display_name":"Jiangsu University of Technology","ror":"https://ror.org/04jabhf80","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210144214"]},{"id":"https://openalex.org/I4210153482","display_name":"Changzhou University","ror":"https://ror.org/04ymgwq66","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210153482"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Z. Zhuang","raw_affiliation_strings":["Ziheng Zhuang is an assistant professor of Changzhou University, Jiangsu, China. His research interests are drug target screening","professor of Changzhou University, Jiangsu, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Ziheng Zhuang is an assistant professor of Changzhou University, Jiangsu, China. His research interests are drug target screening","institution_ids":["https://openalex.org/I4210144214"]},{"raw_affiliation_string":"professor of Changzhou University, Jiangsu, China","institution_ids":["https://openalex.org/I4210144214","https://openalex.org/I4210153482"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5038002539","display_name":"Shengyu Zhou","orcid":"https://orcid.org/0000-0001-8716-7716"},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]},{"id":"https://openalex.org/I4210144214","display_name":"Jiangsu University of Technology","ror":"https://ror.org/04jabhf80","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210144214"]},{"id":"https://openalex.org/I4210153482","display_name":"Changzhou University","ror":"https://ror.org/04ymgwq66","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210153482"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"S. Zhou","raw_affiliation_strings":["Shuigeng Zhou is a professor at School of Computer Science, Fudan University, Shanghai, China. He is also the Executive Vice Director of Shanghai Key Lab of Intelligent Information Processing. His research interests include database, data mining, complex networks and bioinformatics","School of Computer Science, Fudan University, Shanghai, China","professor of Changzhou University, Jiangsu, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Shuigeng Zhou is a professor at School of Computer Science, Fudan University, Shanghai, China. He is also the Executive Vice Director of Shanghai Key Lab of Intelligent Information Processing. His research interests include database, data mining, complex networks and bioinformatics","institution_ids":["https://openalex.org/I24943067"]},{"raw_affiliation_string":"School of Computer Science, Fudan University, Shanghai, China","institution_ids":["https://openalex.org/I24943067"]},{"raw_affiliation_string":"professor of Changzhou University, Jiangsu, China","institution_ids":["https://openalex.org/I4210144214","https://openalex.org/I4210153482"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5038002539"],"corresponding_institution_ids":["https://openalex.org/I24943067","https://openalex.org/I4210144214","https://openalex.org/I4210153482"],"apc_list":{"value":3885,"currency":"USD","value_usd":3885},"apc_paid":null,"fwci":1.278,"has_fulltext":true,"cited_by_count":31,"citation_normalized_percentile":{"value":0.79914159,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"15","issue":"6","first_page":"1014","last_page":"1027"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/nucleosome","display_name":"Nucleosome","score":0.9239858388900757},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6532059907913208},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5044394731521606},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.45080891251564026},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.44906795024871826},{"id":"https://openalex.org/keywords/dna-replication","display_name":"DNA replication","score":0.4403954744338989},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.43030422925949097},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.39314132928848267},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3346571922302246},{"id":"https://openalex.org/keywords/chromatin","display_name":"Chromatin","score":0.26048147678375244}],"concepts":[{"id":"https://openalex.org/C84772758","wikidata":"https://www.wikidata.org/wiki/Q271794","display_name":"Nucleosome","level":4,"score":0.9239858388900757},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6532059907913208},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5044394731521606},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.45080891251564026},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.44906795024871826},{"id":"https://openalex.org/C73573662","wikidata":"https://www.wikidata.org/wiki/Q130996","display_name":"DNA replication","level":3,"score":0.4403954744338989},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.43030422925949097},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.39314132928848267},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3346571922302246},{"id":"https://openalex.org/C83640560","wikidata":"https://www.wikidata.org/wiki/Q180951","display_name":"Chromatin","level":3,"score":0.26048147678375244}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001482","descriptor_name":"Base Composition","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001482","descriptor_name":"Base Composition","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001482","descriptor_name":"Base Composition","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004331","descriptor_name":"Drosophila melanogaster","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004331","descriptor_name":"Drosophila melanogaster","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004331","descriptor_name":"Drosophila melanogaster","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004331","descriptor_name":"Drosophila melanogaster","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004331","descriptor_name":"Drosophila melanogaster","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004331","descriptor_name":"Drosophila melanogaster","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D005091","descriptor_name":"Exons","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005091","descriptor_name":"Exons","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005091","descriptor_name":"Exons","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009707","descriptor_name":"Nucleosomes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009707","descriptor_name":"Nucleosomes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009707","descriptor_name":"Nucleosomes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009707","descriptor_name":"Nucleosomes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009707","descriptor_name":"Nucleosomes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009707","descriptor_name":"Nucleosomes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020121","descriptor_name":"5' Untranslated Regions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020121","descriptor_name":"5' Untranslated Regions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020121","descriptor_name":"5' Untranslated Regions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbt062","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbt062","pdf_url":"https://academic.oup.com/bib/article-pdf/15/6/1014/433293/bbt062.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24023366","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24023366","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":"Comparative Study"}],"best_oa_location":{"id":"doi:10.1093/bib/bbt062","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbt062","pdf_url":"https://academic.oup.com/bib/article-pdf/15/6/1014/433293/bbt062.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6800000071525574,"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2165390431.pdf","grobid_xml":"https://content.openalex.org/works/W2165390431.grobid-xml"},"referenced_works_count":56,"referenced_works":["https://openalex.org/W1513415281","https://openalex.org/W1798421279","https://openalex.org/W1968916935","https://openalex.org/W1972693577","https://openalex.org/W1973528487","https://openalex.org/W1973850164","https://openalex.org/W1980971292","https://openalex.org/W1994288562","https://openalex.org/W1996270170","https://openalex.org/W2002197756","https://openalex.org/W2005282195","https://openalex.org/W2016597274","https://openalex.org/W2018475069","https://openalex.org/W2024280474","https://openalex.org/W2029521343","https://openalex.org/W2029873987","https://openalex.org/W2039011578","https://openalex.org/W2049361027","https://openalex.org/W2050298575","https://openalex.org/W2060289784","https://openalex.org/W2061111901","https://openalex.org/W2065670261","https://openalex.org/W2067301744","https://openalex.org/W2069545688","https://openalex.org/W2072152932","https://openalex.org/W2073374533","https://openalex.org/W2075907707","https://openalex.org/W2076446466","https://openalex.org/W2077562677","https://openalex.org/W2077838441","https://openalex.org/W2083174529","https://openalex.org/W2088011045","https://openalex.org/W2091272073","https://openalex.org/W2096526406","https://openalex.org/W2101553331","https://openalex.org/W2106448802","https://openalex.org/W2108871359","https://openalex.org/W2109157139","https://openalex.org/W2110725132","https://openalex.org/W2110776599","https://openalex.org/W2113512405","https://openalex.org/W2114752404","https://openalex.org/W2114803986","https://openalex.org/W2115219137","https://openalex.org/W2128377942","https://openalex.org/W2130063415","https://openalex.org/W2134314200","https://openalex.org/W2143658931","https://openalex.org/W2144792857","https://openalex.org/W2147523890","https://openalex.org/W2147734340","https://openalex.org/W2150677967","https://openalex.org/W2154109129","https://openalex.org/W2167764944","https://openalex.org/W2170033314","https://openalex.org/W2170470863"],"related_works":["https://openalex.org/W3124098632","https://openalex.org/W1525192260","https://openalex.org/W3034809213","https://openalex.org/W2082123987","https://openalex.org/W1994506687","https://openalex.org/W2151373518","https://openalex.org/W2348141163","https://openalex.org/W2094588941","https://openalex.org/W2076950513","https://openalex.org/W2950609233"],"abstract_inverted_index":{"Nucleosome":[0],"positioning":[1,37,162],"plays":[2],"an":[3],"essential":[4],"role":[5],"in":[6,67,175],"cellular":[7],"processes":[8],"by":[9],"modulating":[10],"accessibility":[11],"of":[12,32,44,53,103,121,126,160,178],"DNA":[13,28,47],"to":[14,22,63,153,183],"proteins.":[15],"Many":[16],"computational":[17,55,83],"models":[18],"have":[19],"been":[20],"developed":[21],"predict":[23],"genome-wide":[24],"nucleosome":[25,36,161,179],"positions":[26],"from":[27,151],"sequences.":[29],"Comparative":[30],"analysis":[31],"predicted":[33],"and":[34,46,59,92,111,171],"experimental":[35,115],"maps":[38],"facilitates":[39],"understanding":[40],"the":[41,119,122,127,134,157,166,176],"regulatory":[42],"mechanisms":[43],"transcription":[45],"replication.":[48],"Therefore,":[49],"a":[50,76],"comprehensive":[51],"evaluation":[52],"existing":[54],"methods":[56,84,99,140],"is":[57,163],"important":[58],"useful":[60],"for":[61],"biologists":[62],"choose":[64],"appropriate":[65],"ones":[66],"their":[68,147],"research.":[69],"In":[70,94],"this":[71],"article,":[72],"we":[73,96],"carried":[74],"out":[75],"performance":[77],"comparison":[78],"among":[79],"eight":[80],"widely":[81],"used":[82],"on":[85,100,143],"four":[86,136,144],"species":[87,105],"including":[88],"yeast,":[89],"fruitfly,":[90],"mouse":[91],"human.":[93],"particular,":[95],"compared":[97],"these":[98,139],"different":[101],"regions":[102],"each":[104],"such":[106],"as":[107],"gene":[108],"sequences,":[109],"promoters":[110],"5'UTR":[112],"exons.":[113],"The":[114],"results":[116],"show":[117],"that":[118,156],"performances":[120,148],"two":[123],"latest":[124],"versions":[125],"thermodynamic":[128],"model":[129],"are":[130,141],"relatively":[131],"steadier":[132],"than":[133],"other":[135],"methods.":[137],"Moreover,":[138],"workable":[142],"species,":[145],"but":[146,169],"decrease":[149],"gradually":[150],"yeast":[152],"human,":[154],"indicating":[155],"fundamental":[158],"mechanism":[159],"conserved":[164],"through":[165],"evolution":[167],"process,":[168],"more":[170,172],"factors":[173],"participate":[174],"determination":[177],"positions,":[180],"which":[181],"leads":[182],"sophisticated":[184],"regulation":[185],"mechanisms.":[186]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":1}],"updated_date":"2026-08-25T07:29:55.448023","created_date":"2025-10-10T00:00:00"}
