{"id":"https://openalex.org/W2047837435","doi":"https://doi.org/10.1093/bib/bbt055","title":"Facilitating the use of large-scale biological data and tools in the era of translational bioinformatics","display_name":"Facilitating the use of large-scale biological data and tools in the era of translational bioinformatics","publication_year":2013,"publication_date":"2013-08-01","ids":{"openalex":"https://openalex.org/W2047837435","doi":"https://doi.org/10.1093/bib/bbt055","mag":"2047837435","pmid":"https://pubmed.ncbi.nlm.nih.gov/23908249"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbt055","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbt055","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5047476347","display_name":"Irene Kouskoumvekaki","orcid":"https://orcid.org/0000-0003-2333-8453"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"I. Kouskoumvekaki","raw_affiliation_strings":["Department of Systems Biology, Center for Biological Sequence Analysis"],"affiliations":[{"raw_affiliation_string":"Department of Systems Biology, Center for Biological Sequence Analysis","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013737526","display_name":"Nour Shublaq","orcid":null},"institutions":[{"id":"https://openalex.org/I2800173700","display_name":"UCL Australia","ror":"https://ror.org/024atcf19","country_code":"AU","type":"education","lineage":["https://openalex.org/I2800173700"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"N. Shublaq","raw_affiliation_strings":["University college London"],"affiliations":[{"raw_affiliation_string":"University college London","institution_ids":["https://openalex.org/I2800173700"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5011862057","display_name":"S\u00f8ren Brunak","orcid":"https://orcid.org/0000-0003-0316-5866"},"institutions":[{"id":"https://openalex.org/I2801134892","display_name":"Novo Nordisk Foundation","ror":"https://ror.org/04txyc737","country_code":"DK","type":"facility","lineage":["https://openalex.org/I2801134892"]},{"id":"https://openalex.org/I2802640032","display_name":"Foundation Center","ror":"https://ror.org/0377f6951","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2802640032"]}],"countries":["DK","US"],"is_corresponding":false,"raw_author_name":"S. Brunak","raw_affiliation_strings":["Department of Systems Biology, Center for Biological Sequence Analysis, Novo Nordisk Foundation Center for Biosustainability, CFB - Metagenomic Systems Biology"],"affiliations":[{"raw_affiliation_string":"Department of Systems Biology, Center for Biological Sequence Analysis, Novo Nordisk Foundation Center for Biosustainability, CFB - Metagenomic Systems Biology","institution_ids":["https://openalex.org/I2801134892","https://openalex.org/I2802640032"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5047476347"],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":1.7968,"has_fulltext":false,"cited_by_count":23,"citation_normalized_percentile":{"value":0.84655597,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"15","issue":"6","first_page":"942","last_page":"952"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.841571033000946},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7278487086296082},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5894359946250916},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5857006311416626},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.5759686231613159},{"id":"https://openalex.org/keywords/biological-database","display_name":"Biological database","score":0.5733238458633423},{"id":"https://openalex.org/keywords/structural-bioinformatics","display_name":"Structural bioinformatics","score":0.5438187718391418},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.5140560865402222},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.4681952893733978},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.42077741026878357},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.4205440580844879},{"id":"https://openalex.org/keywords/translational-bioinformatics","display_name":"Translational bioinformatics","score":0.41420239210128784},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.23448246717453003},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.21520733833312988},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.18047383427619934},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.11790141463279724},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1126510500907898}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.841571033000946},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7278487086296082},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5894359946250916},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5857006311416626},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.5759686231613159},{"id":"https://openalex.org/C20901353","wikidata":"https://www.wikidata.org/wiki/Q4117139","display_name":"Biological database","level":2,"score":0.5733238458633423},{"id":"https://openalex.org/C69131567","wikidata":"https://www.wikidata.org/wiki/Q2068215","display_name":"Structural bioinformatics","level":3,"score":0.5438187718391418},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.5140560865402222},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.4681952893733978},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.42077741026878357},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.4205440580844879},{"id":"https://openalex.org/C163293594","wikidata":"https://www.wikidata.org/wiki/Q7834541","display_name":"Translational bioinformatics","level":5,"score":0.41420239210128784},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.23448246717453003},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.21520733833312988},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.18047383427619934},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.11790141463279724},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1126510500907898},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D057170","descriptor_name":"Translational Research, Biomedical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057170","descriptor_name":"Translational Research, Biomedical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057170","descriptor_name":"Translational Research, Biomedical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bib/bbt055","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbt055","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23908249","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23908249","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/92463430-d7de-46f7-b1d5-640b826fef29","is_oa":false,"landing_page_url":"https://researchprofiles.ku.dk/da/publications/92463430-d7de-46f7-b1d5-640b826fef29","pdf_url":null,"source":{"id":"https://openalex.org/S4306401983","display_name":"Research at the University of Copenhagen (University of Copenhagen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I124055696","host_organization_name":"University of Copenhagen","host_organization_lineage":["https://openalex.org/I124055696"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Kouskoumvekaki , I , Shublaq , N & Brunak , S 2013 , ' Facilitating the use of large-scale biological data and tools in the era of translational bioinformatics ' , Briefings in Bioinformatics . https://doi.org/10.1093/bib/bbt055","raw_type":"article"},{"id":"pmh:oai:pure.atira.dk:publications/070c6775-30b1-42c0-bcce-029ef1d5578f","is_oa":false,"landing_page_url":"https://orbit.dtu.dk/en/publications/070c6775-30b1-42c0-bcce-029ef1d5578f","pdf_url":null,"source":{"id":"https://openalex.org/S4306400705","display_name":"Technical University of Denmark, DTU Orbit (Technical University of Denmark, DTU)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I96673099","host_organization_name":"Technical University of Denmark","host_organization_lineage":["https://openalex.org/I96673099"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Kouskoumvekaki , I , Shublaq , N &amp; Brunak , S 2014 , ' Facilitating the use of large-scale biological data and tools in the era of translational bioinformatics ' , Briefings in Bioinformatics , vol. 15 , no. 6 , pp. 942-952 . https://doi.org/10.1093/bib/bbt055","raw_type":"article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.5299999713897705,"id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":103,"referenced_works":["https://openalex.org/W102787101","https://openalex.org/W1769171304","https://openalex.org/W1968590491","https://openalex.org/W1977856230","https://openalex.org/W1977859620","https://openalex.org/W1983833794","https://openalex.org/W1988186463","https://openalex.org/W1988756388","https://openalex.org/W1988818350","https://openalex.org/W1992297816","https://openalex.org/W1993010157","https://openalex.org/W2000860171","https://openalex.org/W2009671859","https://openalex.org/W2010457001","https://openalex.org/W2010502047","https://openalex.org/W2010798628","https://openalex.org/W2010957046","https://openalex.org/W2013434113","https://openalex.org/W2016382281","https://openalex.org/W2018101086","https://openalex.org/W2018707257","https://openalex.org/W2019509361","https://openalex.org/W2021037350","https://openalex.org/W2022513026","https://openalex.org/W2023098599","https://openalex.org/W2039614939","https://openalex.org/W2041004261","https://openalex.org/W2048495389","https://openalex.org/W2053364844","https://openalex.org/W2054097400","https://openalex.org/W2055051733","https://openalex.org/W2058539819","https://openalex.org/W2062312459","https://openalex.org/W2068606970","https://openalex.org/W2069918359","https://openalex.org/W2076022280","https://openalex.org/W2076479322","https://openalex.org/W2077349551","https://openalex.org/W2080762697","https://openalex.org/W2082565035","https://openalex.org/W2084268683","https://openalex.org/W2092338449","https://openalex.org/W2096435507","https://openalex.org/W2097795961","https://openalex.org/W2099230441","https://openalex.org/W2103017472","https://openalex.org/W2103441770","https://openalex.org/W2103446764","https://openalex.org/W2104224322","https://openalex.org/W2105186755","https://openalex.org/W2105443646","https://openalex.org/W2105924489","https://openalex.org/W2106557940","https://openalex.org/W2109108939","https://openalex.org/W2109933879","https://openalex.org/W2113142309","https://openalex.org/W2113465510","https://openalex.org/W2116096983","https://openalex.org/W2117737004","https://openalex.org/W2120654699","https://openalex.org/W2121401558","https://openalex.org/W2122769974","https://openalex.org/W2123724865","https://openalex.org/W2124993955","https://openalex.org/W2126675803","https://openalex.org/W2130534254","https://openalex.org/W2131660156","https://openalex.org/W2136145671","https://openalex.org/W2136482257","https://openalex.org/W2136850043","https://openalex.org/W2138122783","https://openalex.org/W2140157849","https://openalex.org/W2140665097","https://openalex.org/W2144358847","https://openalex.org/W2145818079","https://openalex.org/W2152135248","https://openalex.org/W2154564841","https://openalex.org/W2155142785","https://openalex.org/W2155399624","https://openalex.org/W2156222477","https://openalex.org/W2156467546","https://openalex.org/W2158217645","https://openalex.org/W2158920723","https://openalex.org/W2159482845","https://openalex.org/W2161271012","https://openalex.org/W2161316901","https://openalex.org/W2162184785","https://openalex.org/W2162419299","https://openalex.org/W2163670493","https://openalex.org/W2166542841","https://openalex.org/W2168204302","https://openalex.org/W2169589032","https://openalex.org/W2170506381","https://openalex.org/W2171030481","https://openalex.org/W2184417913","https://openalex.org/W2395063670","https://openalex.org/W2429898789","https://openalex.org/W2555756618","https://openalex.org/W2916251779","https://openalex.org/W4244949129","https://openalex.org/W4247053599","https://openalex.org/W4294216483","https://openalex.org/W4319308391"],"related_works":["https://openalex.org/W2307569040","https://openalex.org/W2131941936","https://openalex.org/W2541393756","https://openalex.org/W2060096282","https://openalex.org/W2385643360","https://openalex.org/W2739872940","https://openalex.org/W115596161","https://openalex.org/W1983206747","https://openalex.org/W2167730203","https://openalex.org/W2047837435"],"abstract_inverted_index":{"As":[0],"both":[1],"the":[2,9,19,103,123],"amount":[3],"of":[4,21,52,88,105,125],"generated":[5],"biological":[6,53],"data":[7,62,94],"and":[8,48,61,91,97,109,128],"processing":[10],"compute":[11],"power":[12],"increase,":[13],"computational":[14,132],"experimentation":[15],"is":[16,25],"no":[17],"longer":[18],"exclusivity":[20],"bioinformaticians,":[22],"but":[23],"it":[24],"moving":[26],"across":[27],"all":[28],"biomedical":[29,75,126],"domains.":[30],"For":[31],"bioinformatics":[32,65,79,115,129],"to":[33,42,45,58],"realize":[34],"its":[35],"translational":[36],"potential,":[37],"domain":[38],"experts":[39],"need":[40],"access":[41],"user-friendly":[43],"solutions":[44],"navigate,":[46],"integrate":[47],"extract":[49],"information":[50],"out":[51],"databases,":[54],"as":[55,57,111],"well":[56],"combine":[59],"tools":[60,80,130],"resources":[63],"in":[64,77,131],"workflows.":[66,116,133],"In":[67],"this":[68],"review,":[69],"we":[70,101,118],"present":[71],"services":[72,120],"that":[73,121],"assist":[74],"scientists":[76],"incorporating":[78],"into":[81],"their":[82],"research.":[83],"We":[84],"review":[85],"recent":[86],"applications":[87],"Cytoscape,":[89],"BioGPS":[90],"DAVID":[92],"for":[93,114],"visualization,":[95],"integration":[96,124],"functional":[98],"enrichment.":[99],"Moreover,":[100],"illustrate":[102],"use":[104],"Taverna,":[106],"Kepler,":[107],"GenePattern,":[108],"Galaxy":[110],"open-access":[112],"workbenches":[113],"Finally,":[117],"mention":[119],"facilitate":[122],"ontologies":[127]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":4},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":6},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
