{"id":"https://openalex.org/W2148672014","doi":"https://doi.org/10.1093/bib/bbt040","title":"Parallel stochastic systems biology in the cloud","display_name":"Parallel stochastic systems biology in the cloud","publication_year":2013,"publication_date":"2013-06-18","ids":{"openalex":"https://openalex.org/W2148672014","doi":"https://doi.org/10.1093/bib/bbt040","mag":"2148672014","pmid":"https://pubmed.ncbi.nlm.nih.gov/23780997"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbt040","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbt040","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://hdl.handle.net/2318/140080","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5089092418","display_name":"Marco Aldinucci","orcid":"https://orcid.org/0000-0001-8788-0829"},"institutions":[{"id":"https://openalex.org/I55143463","display_name":"University of Turin","ror":"https://ror.org/048tbm396","country_code":"IT","type":"education","lineage":["https://openalex.org/I55143463"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"M. Aldinucci","raw_affiliation_strings":["Computer Science Department, University of Torino, Corso Svizzera 185, 10149 Torino, Italy"],"affiliations":[{"raw_affiliation_string":"Computer Science Department, University of Torino, Corso Svizzera 185, 10149 Torino, Italy","institution_ids":["https://openalex.org/I55143463"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053667707","display_name":"Massimo Torquati","orcid":"https://orcid.org/0000-0001-6323-3459"},"institutions":[{"id":"https://openalex.org/I108290504","display_name":"University of Pisa","ror":"https://ror.org/03ad39j10","country_code":"IT","type":"education","lineage":["https://openalex.org/I108290504"]},{"id":"https://openalex.org/I55143463","display_name":"University of Turin","ror":"https://ror.org/048tbm396","country_code":"IT","type":"education","lineage":["https://openalex.org/I55143463"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"M. Torquati","raw_affiliation_strings":["Computer Science Department, University of Pisa, Largo B. Pontecorvo 3, 56127 Pisa, Italy","Computer Science Department, University of Torino, Corso Svizzera 185, 10149 Torino, Italy"],"affiliations":[{"raw_affiliation_string":"Computer Science Department, University of Pisa, Largo B. Pontecorvo 3, 56127 Pisa, Italy","institution_ids":["https://openalex.org/I108290504"]},{"raw_affiliation_string":"Computer Science Department, University of Torino, Corso Svizzera 185, 10149 Torino, Italy","institution_ids":["https://openalex.org/I55143463"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075815307","display_name":"Concetto Spampinato","orcid":"https://orcid.org/0000-0001-6653-2577"},"institutions":[{"id":"https://openalex.org/I39063666","display_name":"University of Catania","ror":"https://ror.org/03a64bh57","country_code":"IT","type":"education","lineage":["https://openalex.org/I39063666"]},{"id":"https://openalex.org/I55143463","display_name":"University of Turin","ror":"https://ror.org/048tbm396","country_code":"IT","type":"education","lineage":["https://openalex.org/I55143463"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"C. Spampinato","raw_affiliation_strings":["Department of Electrical, Electronics and Computer Engineering, University of Catania, Viale Andrea Doria 6, 95125 Catania, Italy","Computer Science Department, University of Torino, Corso Svizzera 185, 10149 Torino, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Electrical, Electronics and Computer Engineering, University of Catania, Viale Andrea Doria 6, 95125 Catania, Italy","institution_ids":["https://openalex.org/I39063666"]},{"raw_affiliation_string":"Computer Science Department, University of Torino, Corso Svizzera 185, 10149 Torino, Italy","institution_ids":["https://openalex.org/I55143463"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015548694","display_name":"Maurizio Drocco","orcid":"https://orcid.org/0000-0001-6500-7607"},"institutions":[{"id":"https://openalex.org/I55143463","display_name":"University of Turin","ror":"https://ror.org/048tbm396","country_code":"IT","type":"education","lineage":["https://openalex.org/I55143463"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"M. Drocco","raw_affiliation_strings":["Computer Science Department, University of Torino, Corso Svizzera 185, 10149 Torino, Italy"],"affiliations":[{"raw_affiliation_string":"Computer Science Department, University of Torino, Corso Svizzera 185, 10149 Torino, Italy","institution_ids":["https://openalex.org/I55143463"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007904705","display_name":"Claudia Misale","orcid":"https://orcid.org/0000-0003-3737-7373"},"institutions":[{"id":"https://openalex.org/I55143463","display_name":"University of Turin","ror":"https://ror.org/048tbm396","country_code":"IT","type":"education","lineage":["https://openalex.org/I55143463"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"C. Misale","raw_affiliation_strings":["Computer Science Department, University of Torino, Corso Svizzera 185, 10149 Torino, Italy"],"affiliations":[{"raw_affiliation_string":"Computer Science Department, University of Torino, Corso Svizzera 185, 10149 Torino, Italy","institution_ids":["https://openalex.org/I55143463"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075511258","display_name":"C. Calcagno","orcid":null},"institutions":[{"id":"https://openalex.org/I55143463","display_name":"University of Turin","ror":"https://ror.org/048tbm396","country_code":"IT","type":"education","lineage":["https://openalex.org/I55143463"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"C. Calcagno","raw_affiliation_strings":["Department of Life Sciences and Systems Biology, University of Torino, Viale P. A. Mattioli 25, 10125 Torino, Italy","Computer Science Department, University of Torino, Corso Svizzera 185, 10149 Torino, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Life Sciences and Systems Biology, University of Torino, Viale P. A. Mattioli 25, 10125 Torino, Italy","institution_ids":["https://openalex.org/I55143463"]},{"raw_affiliation_string":"Computer Science Department, University of Torino, Corso Svizzera 185, 10149 Torino, Italy","institution_ids":["https://openalex.org/I55143463"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5018907550","display_name":"Massimiliano Coppo","orcid":"https://orcid.org/0000-0002-1255-6263"},"institutions":[{"id":"https://openalex.org/I55143463","display_name":"University of Turin","ror":"https://ror.org/048tbm396","country_code":"IT","type":"education","lineage":["https://openalex.org/I55143463"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"M. Coppo","raw_affiliation_strings":["Computer Science Department, University of Torino, Corso Svizzera 185, 10149 Torino, Italy"],"affiliations":[{"raw_affiliation_string":"Computer Science Department, University of Torino, Corso Svizzera 185, 10149 Torino, Italy","institution_ids":["https://openalex.org/I55143463"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5089092418"],"corresponding_institution_ids":["https://openalex.org/I55143463"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":2.0831,"has_fulltext":false,"cited_by_count":19,"citation_normalized_percentile":{"value":0.87263855,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"15","issue":"5","first_page":"798","last_page":"813"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9915000200271606,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.85295569896698},{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.7892203330993652},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7856874465942383},{"id":"https://openalex.org/keywords/interactivity","display_name":"Interactivity","score":0.7702937126159668},{"id":"https://openalex.org/keywords/merge","display_name":"Merge (version control)","score":0.637312114238739},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.518964946269989},{"id":"https://openalex.org/keywords/monte-carlo-method","display_name":"Monte Carlo method","score":0.4715172052383423},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.470964252948761},{"id":"https://openalex.org/keywords/stochastic-simulation","display_name":"Stochastic simulation","score":0.4702813923358917},{"id":"https://openalex.org/keywords/simulation","display_name":"Simulation","score":0.45111799240112305},{"id":"https://openalex.org/keywords/work-flow","display_name":"Work flow","score":0.4454791247844696},{"id":"https://openalex.org/keywords/computational-science","display_name":"Computational science","score":0.3458464741706848},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.3303235173225403},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.26828455924987793},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.19299748539924622},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.17568397521972656},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.1563102900981903},{"id":"https://openalex.org/keywords/industrial-engineering","display_name":"Industrial engineering","score":0.12307432293891907}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.85295569896698},{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.7892203330993652},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7856874465942383},{"id":"https://openalex.org/C144430266","wikidata":"https://www.wikidata.org/wiki/Q839721","display_name":"Interactivity","level":2,"score":0.7702937126159668},{"id":"https://openalex.org/C197129107","wikidata":"https://www.wikidata.org/wiki/Q1921621","display_name":"Merge (version control)","level":2,"score":0.637312114238739},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.518964946269989},{"id":"https://openalex.org/C19499675","wikidata":"https://www.wikidata.org/wiki/Q232207","display_name":"Monte Carlo method","level":2,"score":0.4715172052383423},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.470964252948761},{"id":"https://openalex.org/C25915931","wikidata":"https://www.wikidata.org/wiki/Q4180825","display_name":"Stochastic simulation","level":2,"score":0.4702813923358917},{"id":"https://openalex.org/C44154836","wikidata":"https://www.wikidata.org/wiki/Q45045","display_name":"Simulation","level":1,"score":0.45111799240112305},{"id":"https://openalex.org/C2985179714","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Work flow","level":2,"score":0.4454791247844696},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.3458464741706848},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.3303235173225403},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.26828455924987793},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.19299748539924622},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.17568397521972656},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.1563102900981903},{"id":"https://openalex.org/C13736549","wikidata":"https://www.wikidata.org/wiki/Q4489420","display_name":"Industrial engineering","level":1,"score":0.12307432293891907},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013269","descriptor_name":"Stochastic Processes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013269","descriptor_name":"Stochastic Processes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013269","descriptor_name":"Stochastic Processes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bib/bbt040","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbt040","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23780997","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23780997","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:arpi.unipi.it:11568/563669","is_oa":false,"landing_page_url":"http://hdl.handle.net/11568/563669","pdf_url":null,"source":{"id":"https://openalex.org/S4377196265","display_name":"CINECA IRIS Institutial research information system (University of Pisa)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I108290504","host_organization_name":"University of Pisa","host_organization_lineage":["https://openalex.org/I108290504"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:iris.unito.it:2318/140080","is_oa":true,"landing_page_url":"http://hdl.handle.net/2318/140080","pdf_url":null,"source":{"id":"https://openalex.org/S4306400637","display_name":"Institutional Research Information System University of Turin (University of Turin)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I55143463","host_organization_name":"University of Turin","host_organization_lineage":["https://openalex.org/I55143463"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"pmh:oai:iris.unito.it:2318/140080","is_oa":true,"landing_page_url":"http://hdl.handle.net/2318/140080","pdf_url":null,"source":{"id":"https://openalex.org/S4306400637","display_name":"Institutional Research Information System University of Turin (University of Turin)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I55143463","host_organization_name":"University of Turin","host_organization_lineage":["https://openalex.org/I55143463"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure","score":0.49000000953674316}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":58,"referenced_works":["https://openalex.org/W192852513","https://openalex.org/W1457703051","https://openalex.org/W1535220465","https://openalex.org/W1568192366","https://openalex.org/W1579108863","https://openalex.org/W1588802060","https://openalex.org/W1597755753","https://openalex.org/W1895464354","https://openalex.org/W1964527851","https://openalex.org/W1965513001","https://openalex.org/W1977997149","https://openalex.org/W1983998787","https://openalex.org/W1990073900","https://openalex.org/W1996572185","https://openalex.org/W1997512351","https://openalex.org/W2002713790","https://openalex.org/W2011411346","https://openalex.org/W2013075149","https://openalex.org/W2032309817","https://openalex.org/W2038192316","https://openalex.org/W2039417226","https://openalex.org/W2041529497","https://openalex.org/W2047331390","https://openalex.org/W2061680337","https://openalex.org/W2062507172","https://openalex.org/W2065783627","https://openalex.org/W2085783269","https://openalex.org/W2091831308","https://openalex.org/W2093931624","https://openalex.org/W2099575742","https://openalex.org/W2101462174","https://openalex.org/W2101768141","https://openalex.org/W2108896820","https://openalex.org/W2111931353","https://openalex.org/W2113317262","https://openalex.org/W2121762798","https://openalex.org/W2124436671","https://openalex.org/W2125359798","https://openalex.org/W2130618526","https://openalex.org/W2131229759","https://openalex.org/W2132536544","https://openalex.org/W2134542242","https://openalex.org/W2136626795","https://openalex.org/W2138261199","https://openalex.org/W2147397672","https://openalex.org/W2149414426","https://openalex.org/W2150952308","https://openalex.org/W2155418451","https://openalex.org/W2157334579","https://openalex.org/W2160820250","https://openalex.org/W2162544437","https://openalex.org/W2162932599","https://openalex.org/W2167875025","https://openalex.org/W2173213060","https://openalex.org/W2256063247","https://openalex.org/W2336894004","https://openalex.org/W2978248818","https://openalex.org/W4237609491"],"related_works":["https://openalex.org/W2319020389","https://openalex.org/W2747851897","https://openalex.org/W1975913006","https://openalex.org/W4240086805","https://openalex.org/W1513662110","https://openalex.org/W2063506784","https://openalex.org/W2013411520","https://openalex.org/W2521348551","https://openalex.org/W2162688250","https://openalex.org/W3004636680"],"abstract_inverted_index":{"The":[0,20],"stochastic":[1],"modelling":[2],"of":[3,11,61,135,146],"biological":[4],"systems,":[5],"coupled":[6],"with":[7],"Monte":[8],"Carlo":[9],"simulation":[10,102,140],"models,":[12,100],"is":[13,70,78,90,141],"an":[14],"increasingly":[15],"popular":[16],"technique":[17],"in":[18,31,108,113,123],"bioinformatics.":[19],"simulation-analysis":[21],"workflow":[22,95,112,129],"may":[23],"result":[24],"computationally":[25],"expensive":[26],"reducing":[27],"the":[28,32,40,55,59,74,84,87,114,128,147,153],"interactivity":[29],"required":[30],"model":[33],"tuning.":[34],"In":[35,57],"this":[36],"work,":[37],"we":[38],"advocate":[39],"high-level":[41,94],"software":[42],"design":[43],"as":[44,92],"a":[45,93,109,125,133],"vehicle":[46],"for":[47,54,66],"building":[48],"efficient":[49],"and":[50,80,104,144],"portable":[51],"parallel":[52,111],"simulators":[53],"cloud.":[56,115],"particular,":[58],"Calculus":[60],"Wrapped":[62],"Components":[63],"(CWC)":[64],"simulator":[65,89,149],"systems":[67],"biology,":[68],"which":[69],"designed":[71,91],"according":[72],"to":[73,83,131],"FastFlow":[75,85],"pattern-based":[76],"approach,":[77],"presented":[79],"discussed.":[81],"Thanks":[82],"framework,":[86],"CWC":[88,99,148],"that":[96,127],"can":[97],"simulate":[98],"merge":[101],"results":[103,137],"statistically":[105],"analyse":[106],"them":[107],"single":[110],"To":[116],"improve":[117],"interactivity,":[118],"successive":[119],"phases":[120],"are":[121,150],"pipelined":[122],"such":[124],"way":[126],"begins":[130],"output":[132],"stream":[134],"analysis":[136],"immediately":[138],"after":[139],"started.":[142],"Performance":[143],"effectiveness":[145],"validated":[151],"on":[152],"Amazon":[154],"Elastic":[155],"Compute":[156],"Cloud.":[157]},"counts_by_year":[{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":6},{"year":2013,"cited_by_count":3}],"updated_date":"2026-03-07T16:01:11.037858","created_date":"2025-10-10T00:00:00"}
