{"id":"https://openalex.org/W2127016131","doi":"https://doi.org/10.1093/bib/bbt024","title":"Teaching the bioinformatics of signaling networks: an integrated approach to facilitate multi-disciplinary learning","display_name":"Teaching the bioinformatics of signaling networks: an integrated approach to facilitate multi-disciplinary learning","publication_year":2013,"publication_date":"2013-05-02","ids":{"openalex":"https://openalex.org/W2127016131","doi":"https://doi.org/10.1093/bib/bbt024","mag":"2127016131","pmid":"https://pubmed.ncbi.nlm.nih.gov/23640570"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbt024","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbt024","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5011513198","display_name":"Tam\u00e1s Korcsm\u00e1ros","orcid":"https://orcid.org/0000-0003-1717-996X"},"institutions":[{"id":"https://openalex.org/I106118109","display_name":"E\u00f6tv\u00f6s Lor\u00e1nd University","ror":"https://ror.org/01jsq2704","country_code":"HU","type":"education","lineage":["https://openalex.org/I106118109"]}],"countries":["HU"],"is_corresponding":true,"raw_author_name":"T. Korcsmaros","raw_affiliation_strings":["Department of Genetics, Eotvos Lorand University, H-1117 Budapest, P\u00e1zm\u00e1ny s. 1/C, Hungary. Tel.: +36302686590; korcsmaros@gmail.com","Department of Genetics, Eotvos Lorand University, H-1117 Budapest, P\u00e1zm\u00e1ny s. 1/C, Hungary. Tel.: +36302686590;"],"affiliations":[{"raw_affiliation_string":"Department of Genetics, Eotvos Lorand University, H-1117 Budapest, P\u00e1zm\u00e1ny s. 1/C, Hungary. Tel.: +36302686590; korcsmaros@gmail.com","institution_ids":[]},{"raw_affiliation_string":"Department of Genetics, Eotvos Lorand University, H-1117 Budapest, P\u00e1zm\u00e1ny s. 1/C, Hungary. Tel.: +36302686590;","institution_ids":["https://openalex.org/I106118109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049471924","display_name":"Zsuzsanna A. Dunai","orcid":"https://orcid.org/0009-0008-1880-429X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Z. A. Dunai","raw_affiliation_strings":["korcsmaros@gmail.com"],"affiliations":[{"raw_affiliation_string":"korcsmaros@gmail.com","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029503476","display_name":"Tibor Vellai","orcid":"https://orcid.org/0000-0002-3520-2572"},"institutions":[{"id":"https://openalex.org/I106118109","display_name":"E\u00f6tv\u00f6s Lor\u00e1nd University","ror":"https://ror.org/01jsq2704","country_code":"HU","type":"education","lineage":["https://openalex.org/I106118109"]}],"countries":["HU"],"is_corresponding":false,"raw_author_name":"T. Vellai","raw_affiliation_strings":["E\u00f6tv\u00f6s L\u00f3r\u00e1nd Tudom\u00e1nyegyetem"],"affiliations":[{"raw_affiliation_string":"E\u00f6tv\u00f6s L\u00f3r\u00e1nd Tudom\u00e1nyegyetem","institution_ids":["https://openalex.org/I106118109"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5081215274","display_name":"P\u00e9ter Csermely","orcid":"https://orcid.org/0000-0001-9234-0659"},"institutions":[{"id":"https://openalex.org/I101202996","display_name":"Semmelweis University","ror":"https://ror.org/01g9ty582","country_code":"HU","type":"education","lineage":["https://openalex.org/I101202996"]}],"countries":["HU"],"is_corresponding":false,"raw_author_name":"P. Csermely","raw_affiliation_strings":["Semmelweis University"],"affiliations":[{"raw_affiliation_string":"Semmelweis University","institution_ids":["https://openalex.org/I101202996"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5011513198"],"corresponding_institution_ids":["https://openalex.org/I106118109"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":16,"citation_normalized_percentile":{"value":0.1064328,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"14","issue":"5","first_page":"618","last_page":"632"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9894999861717224,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9751999974250793,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6235463619232178},{"id":"https://openalex.org/keywords/curriculum","display_name":"Curriculum","score":0.5750283002853394},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.5525182485580444},{"id":"https://openalex.org/keywords/discipline","display_name":"Discipline","score":0.5465545058250427},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.4119275212287903},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.34742748737335205},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3441685140132904},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3438442051410675},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.24977251887321472}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6235463619232178},{"id":"https://openalex.org/C47177190","wikidata":"https://www.wikidata.org/wiki/Q207137","display_name":"Curriculum","level":2,"score":0.5750283002853394},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.5525182485580444},{"id":"https://openalex.org/C8795937","wikidata":"https://www.wikidata.org/wiki/Q11862829","display_name":"Discipline","level":2,"score":0.5465545058250427},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.4119275212287903},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.34742748737335205},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3441685140132904},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3438442051410675},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.24977251887321472},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C36289849","wikidata":"https://www.wikidata.org/wiki/Q34749","display_name":"Social science","level":1,"score":0.0},{"id":"https://openalex.org/C19417346","wikidata":"https://www.wikidata.org/wiki/Q7922","display_name":"Pedagogy","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003479","descriptor_name":"Curriculum","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003479","descriptor_name":"Curriculum","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003479","descriptor_name":"Curriculum","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003585","descriptor_name":"Cell Biology","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false},{"descriptor_ui":"D003585","descriptor_name":"Cell Biology","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false},{"descriptor_ui":"D003585","descriptor_name":"Cell Biology","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false},{"descriptor_ui":"D007858","descriptor_name":"Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007858","descriptor_name":"Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007858","descriptor_name":"Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008967","descriptor_name":"Molecular Biology","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false},{"descriptor_ui":"D008967","descriptor_name":"Molecular Biology","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false},{"descriptor_ui":"D008967","descriptor_name":"Molecular Biology","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false},{"descriptor_ui":"D014495","descriptor_name":"Universities","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014495","descriptor_name":"Universities","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014495","descriptor_name":"Universities","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false},{"descriptor_ui":"D033183","descriptor_name":"Interdisciplinary Communication","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D033183","descriptor_name":"Interdisciplinary Communication","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D033183","descriptor_name":"Interdisciplinary Communication","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bib/bbt024","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbt024","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23640570","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23640570","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:real.mtak.hu:17329","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306400081","display_name":"Repository of the Academy's Library (Library of the Hungarian Academy of Sciences)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210140733","host_organization_name":"Library and Information Centre of the Hungarian Academy of Sciences","host_organization_lineage":["https://openalex.org/I4210140733"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:repo.lib.semmelweis.hu:123456789/2439","is_oa":false,"landing_page_url":"http://repo.lib.semmelweis.hu//handle/123456789/2439","pdf_url":null,"source":{"id":"https://openalex.org/S4306402199","display_name":"Semmelweis University Repository (Semmelweis University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I101202996","host_organization_name":"Semmelweis University","host_organization_lineage":["https://openalex.org/I101202996"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":59,"referenced_works":["https://openalex.org/W429422954","https://openalex.org/W1623698862","https://openalex.org/W1974970634","https://openalex.org/W1976937534","https://openalex.org/W1985498517","https://openalex.org/W1998767819","https://openalex.org/W2000821132","https://openalex.org/W2003516452","https://openalex.org/W2004454306","https://openalex.org/W2005818054","https://openalex.org/W2028133290","https://openalex.org/W2033009604","https://openalex.org/W2041063545","https://openalex.org/W2043570667","https://openalex.org/W2044514479","https://openalex.org/W2057545775","https://openalex.org/W2066580949","https://openalex.org/W2074814235","https://openalex.org/W2079908615","https://openalex.org/W2082152835","https://openalex.org/W2082202339","https://openalex.org/W2085963663","https://openalex.org/W2092944822","https://openalex.org/W2096540950","https://openalex.org/W2097128336","https://openalex.org/W2101588822","https://openalex.org/W2103017472","https://openalex.org/W2104093114","https://openalex.org/W2105712639","https://openalex.org/W2107644675","https://openalex.org/W2110205727","https://openalex.org/W2112676113","https://openalex.org/W2116918946","https://openalex.org/W2125984976","https://openalex.org/W2130253098","https://openalex.org/W2131397861","https://openalex.org/W2132450464","https://openalex.org/W2132848728","https://openalex.org/W2134579178","https://openalex.org/W2139924741","https://openalex.org/W2141885858","https://openalex.org/W2142570576","https://openalex.org/W2143593035","https://openalex.org/W2143969914","https://openalex.org/W2144087703","https://openalex.org/W2147566730","https://openalex.org/W2149717791","https://openalex.org/W2154871726","https://openalex.org/W2155142785","https://openalex.org/W2156251895","https://openalex.org/W2157658519","https://openalex.org/W2158050722","https://openalex.org/W2160943260","https://openalex.org/W2163149540","https://openalex.org/W2164813401","https://openalex.org/W2166087446","https://openalex.org/W2168736003","https://openalex.org/W2916767477","https://openalex.org/W4210623056"],"related_works":["https://openalex.org/W2158714033","https://openalex.org/W4386628104","https://openalex.org/W78967844","https://openalex.org/W3213185671","https://openalex.org/W2509687359","https://openalex.org/W4206945140","https://openalex.org/W4212865750","https://openalex.org/W2362023034","https://openalex.org/W2063941210","https://openalex.org/W2598362101"],"abstract_inverted_index":{"The":[0,148,192],"number":[1],"of":[2,52,61,100,187,199,211],"bioinformatics":[3,30,80,103,128],"tools":[4],"and":[5,10,19,26,56,82,89,121,130,137,165,168,195],"resources":[6,81,129],"that":[7,126],"support":[8,207],"molecular":[9],"cell":[11,119],"biology":[12,21,120],"approaches":[13,48],"is":[14,42,86],"continuously":[15],"expanding.":[16],"Moreover,":[17],"systems":[18],"network":[20,73,113,122,146],"analyses":[22],"are":[23],"accompanied":[24],"more":[25,27],"by":[28],"integrated":[29,143],"methods.":[31],"Traditional":[32],"information-centered":[33],"university":[34,102],"teaching":[35,79,210],"methods":[36],"often":[37],"fail,":[38],"as":[39,84,132,134,162,178,184],"(1)":[40],"it":[41,85],"impossible":[43],"to":[44,109,144,157,206],"cover":[45],"all":[46],"existing":[47],"in":[49,68],"the":[50,62,92,155,196,200,203,208],"frame":[51],"a":[53,58,69,101,185,188],"single":[54],"course,":[55],"(2)":[57],"large":[59],"segment":[60],"current":[63,138],"bioinformation":[64],"can":[65,115,140,175],"become":[66],"obsolete":[67],"few":[70],"years.":[71],"Signaling":[72],"offers":[74],"an":[75,98,179],"excellent":[76],"example":[77],"for":[78],"tools,":[83,131],"both":[87],"focused":[88],"complex":[90],"at":[91],"same":[93],"time.":[94],"Here,":[95],"we":[96,152],"present":[97],"outline":[99],"course":[104,173,201],"with":[105],"four":[106],"sample":[107],"practices":[108],"demonstrate":[110],"how":[111],"signaling":[112,145],"studies":[114],"integrate":[116],"biochemistry,":[117],"genetics,":[118],"sciences.":[123],"We":[124],"show":[125,153],"several":[127],"well":[133],"important":[135],"concepts":[136],"trends,":[139],"also":[141],"be":[142,176],"studies.":[147],"research-type":[149],"hands-on":[150],"experiences":[151],"enable":[154],"students":[156],"improve":[158],"key":[159],"competences":[160],"such":[161],"teamworking,":[163],"creative":[164],"critical":[166],"thinking":[167],"problem":[169],"solving.":[170],"Our":[171],"classroom":[172],"curriculum":[174],"re-formulated":[177],"e-learning":[180],"material":[181],"or":[182],"applied":[183],"part":[186],"specific":[189],"training":[190],"course.":[191],"multi-disciplinary":[193],"approach":[194],"mosaic":[197],"setup":[198],"have":[202],"additional":[204],"benefit":[205],"advanced":[209],"talented":[212],"students.":[213]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":2}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
