{"id":"https://openalex.org/W2130674027","doi":"https://doi.org/10.1093/bib/bbt021","title":"Visualizing time-related data in biology, a review","display_name":"Visualizing time-related data in biology, a review","publication_year":2013,"publication_date":"2013-04-12","ids":{"openalex":"https://openalex.org/W2130674027","doi":"https://doi.org/10.1093/bib/bbt021","mag":"2130674027","pmid":"https://pubmed.ncbi.nlm.nih.gov/23585583"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbt021","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbt021","pdf_url":"https://academic.oup.com/bib/article-pdf/15/5/771/17488522/bbt021.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bib/article-pdf/15/5/771/17488522/bbt021.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103028167","display_name":"Maria Secrier","orcid":"https://orcid.org/0000-0003-2758-1741"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Maria Secrier","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5079833473","display_name":"Reinhard Schneider","orcid":"https://orcid.org/0000-0002-8278-1618"},"institutions":[{"id":"https://openalex.org/I186903577","display_name":"University of Luxembourg","ror":"https://ror.org/036x5ad56","country_code":"LU","type":"education","lineage":["https://openalex.org/I186903577"]}],"countries":["LU"],"is_corresponding":false,"raw_author_name":"Reinhard Schneider","raw_affiliation_strings":["University of Luxembourg > Luxembourg Centre for Systems Biomedicine (LCSB)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Luxembourg > Luxembourg Centre for Systems Biomedicine (LCSB)","institution_ids":["https://openalex.org/I186903577"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5103028167"],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":1.9442,"has_fulltext":false,"cited_by_count":46,"citation_normalized_percentile":{"value":0.86242251,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"15","issue":"5","first_page":"771","last_page":"782"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9919999837875366,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.9736999869346619,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/timeline","display_name":"Timeline","score":0.9027389287948608},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.7010496854782104},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6637917757034302},{"id":"https://openalex.org/keywords/exploit","display_name":"Exploit","score":0.594699501991272},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5769940614700317},{"id":"https://openalex.org/keywords/interpretation","display_name":"Interpretation (philosophy)","score":0.4762965738773346},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.4754328727722168},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.20597168803215027},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.20399713516235352},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.17447561025619507}],"concepts":[{"id":"https://openalex.org/C4438859","wikidata":"https://www.wikidata.org/wiki/Q186117","display_name":"Timeline","level":2,"score":0.9027389287948608},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.7010496854782104},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6637917757034302},{"id":"https://openalex.org/C165696696","wikidata":"https://www.wikidata.org/wiki/Q11287","display_name":"Exploit","level":2,"score":0.594699501991272},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5769940614700317},{"id":"https://openalex.org/C527412718","wikidata":"https://www.wikidata.org/wiki/Q855395","display_name":"Interpretation (philosophy)","level":2,"score":0.4762965738773346},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.4754328727722168},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.20597168803215027},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.20399713516235352},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.17447561025619507},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001695","descriptor_name":"Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001695","descriptor_name":"Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001695","descriptor_name":"Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013995","descriptor_name":"Time","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013995","descriptor_name":"Time","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013995","descriptor_name":"Time","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bib/bbt021","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbt021","pdf_url":"https://academic.oup.com/bib/article-pdf/15/5/771/17488522/bbt021.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23585583","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23585583","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:3143146","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4171679","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:orbilu.uni.lu:10993/16771","is_oa":true,"landing_page_url":"https://orbilu.uni.lu/handle/10993/16771","pdf_url":null,"source":{"id":"https://openalex.org/S4306401815","display_name":"Open Repository and Bibliography (University of Luxembourg)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I186903577","host_organization_name":"University of Luxembourg","host_organization_lineage":["https://openalex.org/I186903577"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Briefings in Bioinformatics. Briefings in Bioinformatics (2013).","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bib/bbt021","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbt021","pdf_url":"https://academic.oup.com/bib/article-pdf/15/5/771/17488522/bbt021.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.5600000023841858}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W2130674027.pdf"},"referenced_works_count":124,"referenced_works":["https://openalex.org/W96334552","https://openalex.org/W1486227877","https://openalex.org/W1494031014","https://openalex.org/W1515226261","https://openalex.org/W1521186529","https://openalex.org/W1523838071","https://openalex.org/W1541206712","https://openalex.org/W1567943728","https://openalex.org/W1576664335","https://openalex.org/W1599969036","https://openalex.org/W1826431536","https://openalex.org/W1946371345","https://openalex.org/W1965112674","https://openalex.org/W1965551074","https://openalex.org/W1970156673","https://openalex.org/W1971471239","https://openalex.org/W1972153212","https://openalex.org/W1973354049","https://openalex.org/W1975017523","https://openalex.org/W1976443465","https://openalex.org/W1978486653","https://openalex.org/W1979833590","https://openalex.org/W1980676977","https://openalex.org/W1990095531","https://openalex.org/W1991105970","https://openalex.org/W1992110266","https://openalex.org/W1994698160","https://openalex.org/W1994941778","https://openalex.org/W1996681236","https://openalex.org/W1996952375","https://openalex.org/W2002944058","https://openalex.org/W2002967134","https://openalex.org/W2007452808","https://openalex.org/W2008199711","https://openalex.org/W2010099799","https://openalex.org/W2013493447","https://openalex.org/W2015094506","https://openalex.org/W2016088798","https://openalex.org/W2019472515","https://openalex.org/W2020541351","https://openalex.org/W2023116290","https://openalex.org/W2024138709","https://openalex.org/W2024290096","https://openalex.org/W2025540189","https://openalex.org/W2027448315","https://openalex.org/W2027531009","https://openalex.org/W2028529745","https://openalex.org/W2029030701","https://openalex.org/W2029667189","https://openalex.org/W2037594820","https://openalex.org/W2038264484","https://openalex.org/W2038979616","https://openalex.org/W2040890820","https://openalex.org/W2049008768","https://openalex.org/W2059147903","https://openalex.org/W2073363564","https://openalex.org/W2079875740","https://openalex.org/W2080884697","https://openalex.org/W2081681829","https://openalex.org/W2081781433","https://openalex.org/W2081840472","https://openalex.org/W2082340690","https://openalex.org/W2082545088","https://openalex.org/W2083034544","https://openalex.org/W2084191969","https://openalex.org/W2088412871","https://openalex.org/W2091789479","https://openalex.org/W2091940856","https://openalex.org/W2099901798","https://openalex.org/W2100296291","https://openalex.org/W2101142880","https://openalex.org/W2101462174","https://openalex.org/W2102653059","https://openalex.org/W2103822396","https://openalex.org/W2105811945","https://openalex.org/W2107316538","https://openalex.org/W2108334394","https://openalex.org/W2108883386","https://openalex.org/W2109490332","https://openalex.org/W2111288686","https://openalex.org/W2113310577","https://openalex.org/W2114463320","https://openalex.org/W2117792884","https://openalex.org/W2118233996","https://openalex.org/W2118571345","https://openalex.org/W2120906159","https://openalex.org/W2124967403","https://openalex.org/W2126218947","https://openalex.org/W2127157300","https://openalex.org/W2128362727","https://openalex.org/W2130618526","https://openalex.org/W2131067724","https://openalex.org/W2132034930","https://openalex.org/W2132262459","https://openalex.org/W2132352688","https://openalex.org/W2132585078","https://openalex.org/W2132629607","https://openalex.org/W2132632499","https://openalex.org/W2144738674","https://openalex.org/W2147272585","https://openalex.org/W2148047088","https://openalex.org/W2148541040","https://openalex.org/W2148803358","https://openalex.org/W2150375898","https://openalex.org/W2150981663","https://openalex.org/W2153228625","https://openalex.org/W2153490111","https://openalex.org/W2153909418","https://openalex.org/W2154976095","https://openalex.org/W2156340241","https://openalex.org/W2158804744","https://openalex.org/W2159675211","https://openalex.org/W2162032011","https://openalex.org/W2165867280","https://openalex.org/W2166106382","https://openalex.org/W2170798597","https://openalex.org/W2171268876","https://openalex.org/W2188254984","https://openalex.org/W2416234265","https://openalex.org/W3037896947","https://openalex.org/W4243340826","https://openalex.org/W6630786662","https://openalex.org/W6682449849","https://openalex.org/W6687350183"],"related_works":["https://openalex.org/W2615108550","https://openalex.org/W4379644810","https://openalex.org/W3173544188","https://openalex.org/W2100621367","https://openalex.org/W2130674027","https://openalex.org/W2149213058","https://openalex.org/W2588258456","https://openalex.org/W2153490111","https://openalex.org/W2291683808","https://openalex.org/W2917441627"],"abstract_inverted_index":{"Time":[0],"is":[1,23,53,121],"of":[2,20,28,37,41,62,117,136],"the":[3,18,26,38,60,118,125],"essence":[4],"in":[5,8,67,79,87,112,133],"biology":[6],"as":[7],"so":[9],"much":[10],"else.":[11],"For":[12],"example,":[13],"monitoring":[14],"disease":[15],"progression":[16],"or":[17],"timing":[19,74],"developmental":[21],"defects":[22],"important":[24],"for":[25],"processes":[27,138],"drug":[29],"discovery":[30],"and":[31,78,89,139,146],"therapy":[32],"trials.":[33],"Furthermore,":[34],"an":[35],"understanding":[36],"basic":[39],"dynamics":[40],"biological":[42,63,134],"phenomena":[43],"that":[44,92],"are":[45],"often":[46],"strictly":[47],"time":[48],"regulated":[49],"(e.g.":[50],"circadian":[51],"rhythms)":[52],"needed":[54],"to":[55,72,94],"make":[56],"accurate":[57],"inferences":[58],"about":[59],"evolution":[61],"processes.":[64],"Recent":[65],"advances":[66,86,132],"technologies":[68],"have":[69,109],"enabled":[70],"us":[71],"measure":[73],"effects":[75],"more":[76,80,105],"accurately":[77],"detail.":[81],"This":[82],"has":[83],"driven":[84],"related":[85],"visualization":[88,135],"analysis":[90,145],"tools":[91],"try":[93],"effectively":[95],"exploit":[96],"this":[97],"data.":[98],"Beyond":[99],"timeline":[100],"plots,":[101],"notable":[102],"attempts":[103],"at":[104],"involved":[106],"temporal":[107],"interpretation":[108],"been":[110],"made":[111],"recent":[113],"years,":[114],"but":[115],"awareness":[116],"available":[119],"resources":[120],"still":[122],"limited":[123],"within":[124],"scientific":[126],"community.":[127],"Here,":[128],"we":[129],"review":[130],"some":[131],"time-driven":[137],"consider":[140],"how":[141],"they":[142],"aid":[143],"data":[144],"interpretation.":[147]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":9},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":6},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":1}],"updated_date":"2026-05-22T06:13:13.366637","created_date":"2025-10-10T00:00:00"}
