{"id":"https://openalex.org/W2112837739","doi":"https://doi.org/10.1093/bib/bbt019","title":"An allometric model for mapping seed development in plants","display_name":"An allometric model for mapping seed development in plants","publication_year":2013,"publication_date":"2013-03-29","ids":{"openalex":"https://openalex.org/W2112837739","doi":"https://doi.org/10.1093/bib/bbt019","mag":"2112837739","pmid":"https://pubmed.ncbi.nlm.nih.gov/23543351"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbt019","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbt019","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5059823184","display_name":"Zhuoli Huang","orcid":"https://orcid.org/0000-0002-0567-7032"},"institutions":[{"id":"https://openalex.org/I4210163247","display_name":"Henan Institute of Science and Technology","ror":"https://ror.org/0578f1k82","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210163247"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Z. Huang","raw_affiliation_strings":["Henan Institute of Science and Technology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Henan Institute of Science and Technology","institution_ids":["https://openalex.org/I4210163247"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070596137","display_name":"Chunfa Tong","orcid":null},"institutions":[{"id":"https://openalex.org/I167027274","display_name":"Nanjing Forestry University","ror":"https://ror.org/03m96p165","country_code":"CN","type":"education","lineage":["https://openalex.org/I167027274"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"C. Tong","raw_affiliation_strings":["Nanjing Forestry University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Nanjing Forestry University","institution_ids":["https://openalex.org/I167027274"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056989115","display_name":"Bo Wang","orcid":"https://orcid.org/0000-0003-2270-2241"},"institutions":[{"id":"https://openalex.org/I31683504","display_name":"Beijing Forestry University","ror":"https://ror.org/04xv2pc41","country_code":"CN","type":"education","lineage":["https://openalex.org/I1327237609","https://openalex.org/I31683504","https://openalex.org/I4210127390"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"W. Bo","raw_affiliation_strings":["Beijing Forestry University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Beijing Forestry University","institution_ids":["https://openalex.org/I31683504"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071705008","display_name":"Xiuhua Pang","orcid":"https://orcid.org/0000-0002-0115-1973"},"institutions":[{"id":"https://openalex.org/I31683504","display_name":"Beijing Forestry University","ror":"https://ror.org/04xv2pc41","country_code":"CN","type":"education","lineage":["https://openalex.org/I1327237609","https://openalex.org/I31683504","https://openalex.org/I4210127390"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"X. Pang","raw_affiliation_strings":["Beijing Forestry University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Beijing Forestry University","institution_ids":["https://openalex.org/I31683504"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100371711","display_name":"Zijian Wang","orcid":"https://orcid.org/0000-0002-9847-9691"},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Z. Wang","raw_affiliation_strings":["Pennsylvania State Univ#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Pennsylvania State Univ#TAB#","institution_ids":["https://openalex.org/I130769515"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065687418","display_name":"Jichen Xu","orcid":"https://orcid.org/0000-0001-6496-7120"},"institutions":[{"id":"https://openalex.org/I31683504","display_name":"Beijing Forestry University","ror":"https://ror.org/04xv2pc41","country_code":"CN","type":"education","lineage":["https://openalex.org/I1327237609","https://openalex.org/I31683504","https://openalex.org/I4210127390"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"J. Xu","raw_affiliation_strings":["Beijing Forestry University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Beijing Forestry University","institution_ids":["https://openalex.org/I31683504"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111855806","display_name":"Gai Junyi","orcid":"https://orcid.org/0000-0001-6222-2010"},"institutions":[{"id":"https://openalex.org/I119454577","display_name":"Nanjing Agricultural University","ror":"https://ror.org/05td3s095","country_code":"CN","type":"education","lineage":["https://openalex.org/I119454577"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"J. Gai","raw_affiliation_strings":["Nanjing Agricultural University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Nanjing Agricultural University","institution_ids":["https://openalex.org/I119454577"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5031422180","display_name":"Rongling Wu","orcid":"https://orcid.org/0000-0001-8350-7779"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"R. Wu","raw_affiliation_strings":["Department of Public Health Sciences"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Public Health Sciences","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":0.461,"has_fulltext":false,"cited_by_count":16,"citation_normalized_percentile":{"value":0.76170146,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"15","issue":"4","first_page":"562","last_page":"570"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12571","display_name":"Soybean genetics and cultivation","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12571","display_name":"Soybean genetics and cultivation","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11229","display_name":"Genetics and Plant Breeding","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/quantitative-trait-locus","display_name":"Quantitative trait locus","score":0.7917086482048035},{"id":"https://openalex.org/keywords/allometry","display_name":"Allometry","score":0.7835347652435303},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6610957980155945},{"id":"https://openalex.org/keywords/trait","display_name":"Trait","score":0.6446870565414429},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.4687595069408417},{"id":"https://openalex.org/keywords/linkage","display_name":"Linkage (software)","score":0.4571741223335266},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.42726951837539673},{"id":"https://openalex.org/keywords/agronomy","display_name":"Agronomy","score":0.33281633257865906},{"id":"https://openalex.org/keywords/biotechnology","display_name":"Biotechnology","score":0.3233248293399811},{"id":"https://openalex.org/keywords/botany","display_name":"Botany","score":0.26193779706954956},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.18665876984596252},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.17554771900177002},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.17109635472297668},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.16704460978507996},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08075916767120361}],"concepts":[{"id":"https://openalex.org/C81941488","wikidata":"https://www.wikidata.org/wiki/Q853421","display_name":"Quantitative trait locus","level":3,"score":0.7917086482048035},{"id":"https://openalex.org/C153026981","wikidata":"https://www.wikidata.org/wiki/Q519888","display_name":"Allometry","level":2,"score":0.7835347652435303},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6610957980155945},{"id":"https://openalex.org/C106934330","wikidata":"https://www.wikidata.org/wiki/Q1971873","display_name":"Trait","level":2,"score":0.6446870565414429},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.4687595069408417},{"id":"https://openalex.org/C31266012","wikidata":"https://www.wikidata.org/wiki/Q6554340","display_name":"Linkage (software)","level":3,"score":0.4571741223335266},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.42726951837539673},{"id":"https://openalex.org/C6557445","wikidata":"https://www.wikidata.org/wiki/Q173113","display_name":"Agronomy","level":1,"score":0.33281633257865906},{"id":"https://openalex.org/C150903083","wikidata":"https://www.wikidata.org/wiki/Q7108","display_name":"Biotechnology","level":1,"score":0.3233248293399811},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.26193779706954956},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.18665876984596252},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.17554771900177002},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.17109635472297668},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.16704460978507996},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08075916767120361},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000196","qualifier_name":"embryology","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000196","qualifier_name":"embryology","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000196","qualifier_name":"embryology","is_major_topic":false},{"descriptor_ui":"D012639","descriptor_name":"Seeds","qualifier_ui":"Q000254","qualifier_name":"growth & development","is_major_topic":false},{"descriptor_ui":"D012639","descriptor_name":"Seeds","qualifier_ui":"Q000254","qualifier_name":"growth & development","is_major_topic":false},{"descriptor_ui":"D012639","descriptor_name":"Seeds","qualifier_ui":"Q000254","qualifier_name":"growth & development","is_major_topic":false},{"descriptor_ui":"D040641","descriptor_name":"Quantitative Trait Loci","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040641","descriptor_name":"Quantitative Trait Loci","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040641","descriptor_name":"Quantitative Trait Loci","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbt019","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbt019","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23543351","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23543351","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/2","display_name":"Zero hunger","score":0.7599999904632568}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":44,"referenced_works":["https://openalex.org/W592206274","https://openalex.org/W1509909912","https://openalex.org/W1561461159","https://openalex.org/W1569837076","https://openalex.org/W1614755592","https://openalex.org/W1763240259","https://openalex.org/W1841573652","https://openalex.org/W1847290645","https://openalex.org/W1864995317","https://openalex.org/W1944381374","https://openalex.org/W1966914107","https://openalex.org/W1967731019","https://openalex.org/W1968676313","https://openalex.org/W1974247082","https://openalex.org/W1980262037","https://openalex.org/W1980803758","https://openalex.org/W1986306522","https://openalex.org/W1994114715","https://openalex.org/W1995299768","https://openalex.org/W1996952375","https://openalex.org/W2000541616","https://openalex.org/W2001002354","https://openalex.org/W2024611223","https://openalex.org/W2033459780","https://openalex.org/W2043262216","https://openalex.org/W2050180108","https://openalex.org/W2061456938","https://openalex.org/W2074042528","https://openalex.org/W2082197908","https://openalex.org/W2091818178","https://openalex.org/W2108539011","https://openalex.org/W2121344045","https://openalex.org/W2130499440","https://openalex.org/W2133467365","https://openalex.org/W2135786441","https://openalex.org/W2148720618","https://openalex.org/W2154058060","https://openalex.org/W2155689086","https://openalex.org/W2156588882","https://openalex.org/W2159772932","https://openalex.org/W2162673875","https://openalex.org/W2168710850","https://openalex.org/W2504433001","https://openalex.org/W4205627967"],"related_works":["https://openalex.org/W2885409393","https://openalex.org/W4231021975","https://openalex.org/W2356844369","https://openalex.org/W1991811939","https://openalex.org/W2010495877","https://openalex.org/W1482174728","https://openalex.org/W1929586949","https://openalex.org/W2092217893","https://openalex.org/W4254885610","https://openalex.org/W1978345147"],"abstract_inverted_index":{"Despite":[0],"a":[1,23,43,137,194,198,204],"tremendous":[2],"effort":[3],"to":[4,96,135,141,165,179,196],"map":[5],"quantitative":[6],"trait":[7],"loci":[8],"(QTLs)":[9],"responsible":[10],"for":[11,45,93],"agriculturally":[12],"and":[13,59,74,103,110],"biologically":[14],"important":[15],"traits":[16],"in":[17,158,193],"plants,":[18],"our":[19],"understanding":[20],"of":[21,29,48,54,65,81,87,114,120,124,144,150,169,190,201],"how":[22],"QTL":[24],"governs":[25],"the":[26,52,55,79,85,117,121,125,133,142,148,188],"developmental":[27],"process":[28],"plant":[30],"seeds":[31,202],"remains":[32],"elusive.":[33],"In":[34],"this":[35,39,82],"article,":[36],"we":[37],"address":[38],"issue":[40],"by":[41,72,186],"describing":[42],"model":[44,134],"functional":[46,88],"mapping":[47,89],"seed":[49,94,115,151,170,181,191],"development":[50,95,192],"through":[51],"incorporation":[53],"relationship":[56],"between":[57],"vegetative":[58,68],"reproductive":[60,66],"growth.":[61],"The":[62,173],"time":[63],"difference":[64],"from":[67],"growth":[69,149,167],"is":[70],"described":[71],"Reeve":[73,109],"Huxley\u2019s":[75,111],"allometric":[76,112],"equation.":[77],"Thus,":[78],"implementation":[80],"equation":[83],"into":[84],"framework":[86],"allows":[90],"dynamic":[91,118,155],"QTLs":[92,126,145,174],"be":[97,129,177],"identified":[98,127],"more":[99],"precisely.":[100],"By":[101],"estimating":[102],"testing":[104],"mathematical":[105],"parameters":[106],"that":[107,146],"define":[108],"equations":[113],"growth,":[116],"pattern":[119,189],"genetic":[122],"effects":[123],"can":[128],"analyzed.":[130],"We":[131],"used":[132,178],"analyze":[136],"soybean":[138],"data,":[139],"leading":[140],"detection":[143],"control":[147],"dry":[152,171],"weight.":[153,172],"Three":[154],"QTLs,":[156],"located":[157],"two":[159],"different":[160],"linkage":[161],"groups,":[162],"were":[163],"detected":[164,175],"affect":[166],"curves":[168],"may":[176],"improve":[180],"yield":[182],"with":[183],"marker-assisted":[184],"selection":[185],"altering":[187],"hope":[195],"achieve":[197],"maximum":[199],"size":[200],"at":[203],"harvest":[205],"time.":[206]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":1},{"year":2015,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
