{"id":"https://openalex.org/W2104108806","doi":"https://doi.org/10.1093/bib/bbt009","title":"BLAST output visualization in the new sequencing era","display_name":"BLAST output visualization in the new sequencing era","publication_year":2013,"publication_date":"2013-04-19","ids":{"openalex":"https://openalex.org/W2104108806","doi":"https://doi.org/10.1093/bib/bbt009","mag":"2104108806","pmid":"https://pubmed.ncbi.nlm.nih.gov/23603091"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbt009","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbt009","pdf_url":"https://academic.oup.com/bib/article-pdf/15/4/484/1140516/bbt009.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/15/4/484/1140516/bbt009.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5064265282","display_name":"Ralf S. Neumann","orcid":"https://orcid.org/0000-0002-5007-3342"},"institutions":[{"id":"https://openalex.org/I163161326","display_name":"Neumann University","ror":"https://ror.org/02sak2w47","country_code":"US","type":"education","lineage":["https://openalex.org/I163161326"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"R. S. Neumann","raw_affiliation_strings":["Ralf Neumann is a PhD student in bioinformatics of MERG at the University of Oslo"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Ralf Neumann is a PhD student in bioinformatics of MERG at the University of Oslo","institution_ids":["https://openalex.org/I163161326"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014777604","display_name":"Surendra Kumar","orcid":"https://orcid.org/0000-0001-5396-5509"},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"S. Kumar","raw_affiliation_strings":["Surendra Kumar is a PhD student in bioinformatics of MERG at the University of Oslo"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Surendra Kumar is a PhD student in bioinformatics of MERG at the University of Oslo","institution_ids":["https://openalex.org/I184942183"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5031283595","display_name":"Kamran Shalchian\u2010Tabrizi","orcid":"https://orcid.org/0000-0002-0911-9126"},"institutions":[{"id":"https://openalex.org/I4210141198","display_name":"Office of the Governor","ror":"https://ror.org/04jjxrc37","country_code":"US","type":"government","lineage":["https://openalex.org/I4210141198"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"K. Shalchian-Tabrizi","raw_affiliation_strings":["Kamran Shalchian-Tabrizi is the group leader of MERG and the inventor of the Bioportal bioinformatics service"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Kamran Shalchian-Tabrizi is the group leader of MERG and the inventor of the Bioportal bioinformatics service","institution_ids":["https://openalex.org/I4210141198"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":1.7699,"has_fulltext":false,"cited_by_count":27,"citation_normalized_percentile":{"value":0.8475995,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"15","issue":"4","first_page":"484","last_page":"503"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9865000247955322,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9857000112533569,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7539989352226257},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.7248375415802002},{"id":"https://openalex.org/keywords/interpreter","display_name":"Interpreter","score":0.5601431727409363},{"id":"https://openalex.org/keywords/throughput","display_name":"Throughput","score":0.5161267518997192},{"id":"https://openalex.org/keywords/parsing","display_name":"Parsing","score":0.43153834342956543},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.2682040333747864},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2147877812385559},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.13830891251564026},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.13820302486419678}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7539989352226257},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.7248375415802002},{"id":"https://openalex.org/C122783720","wikidata":"https://www.wikidata.org/wiki/Q183065","display_name":"Interpreter","level":2,"score":0.5601431727409363},{"id":"https://openalex.org/C157764524","wikidata":"https://www.wikidata.org/wiki/Q1383412","display_name":"Throughput","level":3,"score":0.5161267518997192},{"id":"https://openalex.org/C186644900","wikidata":"https://www.wikidata.org/wiki/Q194152","display_name":"Parsing","level":2,"score":0.43153834342956543},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2682040333747864},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2147877812385559},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.13830891251564026},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.13820302486419678},{"id":"https://openalex.org/C555944384","wikidata":"https://www.wikidata.org/wiki/Q249","display_name":"Wireless","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017421","descriptor_name":"Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017421","descriptor_name":"Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017421","descriptor_name":"Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbt009","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbt009","pdf_url":"https://academic.oup.com/bib/article-pdf/15/4/484/1140516/bbt009.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23603091","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23603091","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bib/bbt009","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbt009","pdf_url":"https://academic.oup.com/bib/article-pdf/15/4/484/1140516/bbt009.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure","score":0.6000000238418579}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2104108806.pdf"},"referenced_works_count":52,"referenced_works":["https://openalex.org/W1570643690","https://openalex.org/W1621436158","https://openalex.org/W1730532538","https://openalex.org/W1825157170","https://openalex.org/W1990765622","https://openalex.org/W1998767819","https://openalex.org/W2032019813","https://openalex.org/W2036149515","https://openalex.org/W2042369712","https://openalex.org/W2047242127","https://openalex.org/W2050077513","https://openalex.org/W2050998650","https://openalex.org/W2055043387","https://openalex.org/W2062475681","https://openalex.org/W2064444082","https://openalex.org/W2064632458","https://openalex.org/W2072486135","https://openalex.org/W2091030812","https://openalex.org/W2097831352","https://openalex.org/W2101289352","https://openalex.org/W2101350700","https://openalex.org/W2101887349","https://openalex.org/W2103017472","https://openalex.org/W2105550995","https://openalex.org/W2116150018","https://openalex.org/W2116895571","https://openalex.org/W2121013757","https://openalex.org/W2122101206","https://openalex.org/W2124023685","https://openalex.org/W2126629871","https://openalex.org/W2128880918","https://openalex.org/W2130792460","https://openalex.org/W2133574572","https://openalex.org/W2136826997","https://openalex.org/W2137075133","https://openalex.org/W2137906189","https://openalex.org/W2140733984","https://openalex.org/W2141062474","https://openalex.org/W2142678478","https://openalex.org/W2144444308","https://openalex.org/W2145100181","https://openalex.org/W2147618358","https://openalex.org/W2150782408","https://openalex.org/W2154883726","https://openalex.org/W2158637000","https://openalex.org/W2158714788","https://openalex.org/W2163910672","https://openalex.org/W2164154943","https://openalex.org/W2170516178","https://openalex.org/W2237203044","https://openalex.org/W4236236547","https://openalex.org/W4242729757"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W1721418433","https://openalex.org/W3209222648","https://openalex.org/W2463512549","https://openalex.org/W2246915267","https://openalex.org/W1844878253","https://openalex.org/W2004305899","https://openalex.org/W2611574984","https://openalex.org/W3089412887","https://openalex.org/W2548985027"],"abstract_inverted_index":{"The":[0],"Basic":[1],"Local":[2],"Alignment":[3],"Search":[4],"Tool":[5],"(BLAST)":[6],"algorithm":[7],"remains":[8],"one":[9],"of":[10,65],"the":[11,29],"most":[12],"widely":[13],"used":[14],"bioinformatic":[15,60],"programs.":[16],"For":[17],"many":[18],"projects,":[19],"new":[20],"sequencing":[21],"technologies":[22],"and":[23,70,107],"increased":[24],"database":[25],"sizes":[26],"will":[27],"increase":[28],"BLAST":[30,50,66,80,87,90,92],"output":[31,35,67,81,88,93],"significantly.":[32],"Frequently,":[33],"this":[34,76],"is":[36,41],"so":[37],"large":[38],"that":[39],"it":[40],"no":[42],"longer":[43],"able":[44],"to":[45,102],"be":[46],"processed":[47],"manually.":[48],"As":[49],"users":[51],"are":[52,72,84,99],"increasingly":[53],"recruited":[54],"from":[55],"mainstream":[56],"biology":[57],"without":[58],"any":[59],"background,":[61],"user-friendly":[62],"programs":[63,83],"capable":[64],"visualization,":[68],"analysis":[69,105],"post-processing":[71],"in":[73],"demand.":[74],"In":[75],"review,":[77],"freely":[78],"available":[79],"processing":[82,110],"categorized":[85],"as":[86],"interpreters,":[89],"environments,":[91],"parsers":[94],"or":[95],"specialized":[96],"tools.":[97],"They":[98],"evaluated":[100],"according":[101],"their":[103],"user-friendliness,":[104],"features":[106],"high-throughput":[108],"data":[109],"capabilities.":[111]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":4}],"updated_date":"2026-06-23T06:36:01.041984","created_date":"2025-10-10T00:00:00"}