{"id":"https://openalex.org/W2160349075","doi":"https://doi.org/10.1093/bib/bbt005","title":"A first course in computing with applications to biology","display_name":"A first course in computing with applications to biology","publication_year":2013,"publication_date":"2013-02-28","ids":{"openalex":"https://openalex.org/W2160349075","doi":"https://doi.org/10.1093/bib/bbt005","mag":"2160349075","pmid":"https://pubmed.ncbi.nlm.nih.gov/23449003"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbt005","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbt005","pdf_url":"https://academic.oup.com/bib/article-pdf/14/5/610/580191/bbt005.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/14/5/610/580191/bbt005.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5081839833","display_name":"Ran Libeskind-Hadas","orcid":"https://orcid.org/0000-0001-9120-1948"},"institutions":[{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]},{"id":"https://openalex.org/I133543626","display_name":"Harvey Mudd College","ror":"https://ror.org/025ecfn45","country_code":"US","type":"education","lineage":["https://openalex.org/I133543626"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"R. Libeskind-Hadas","raw_affiliation_strings":["Department of Computer Science, Harvey Mudd College, Claremont, CA 91711, USA. Tel.: +909-621-8976; Fax: +909-621-8465; hadas@cs.hmc.edu","University of Illinois at Urbana-Champaign","Department of Computer Science, Harvey Mudd College, Claremont, CA 91711, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Harvey Mudd College, Claremont, CA 91711, USA. Tel.: +909-621-8976; Fax: +909-621-8465; hadas@cs.hmc.edu","institution_ids":[]},{"raw_affiliation_string":"University of Illinois at Urbana-Champaign","institution_ids":["https://openalex.org/I157725225"]},{"raw_affiliation_string":"Department of Computer Science, Harvey Mudd College, Claremont, CA 91711, USA","institution_ids":["https://openalex.org/I133543626"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5010020076","display_name":"Eliot Bush","orcid":"https://orcid.org/0000-0001-5476-8005"},"institutions":[{"id":"https://openalex.org/I133543626","display_name":"Harvey Mudd College","ror":"https://ror.org/025ecfn45","country_code":"US","type":"education","lineage":["https://openalex.org/I133543626"]},{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"E. Bush","raw_affiliation_strings":["Department of Computer Science, Harvey Mudd College, Claremont, CA 91711, USA","University of Illinois at Urbana-Champaign"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Harvey Mudd College, Claremont, CA 91711, USA","institution_ids":["https://openalex.org/I133543626"]},{"raw_affiliation_string":"University of Illinois at Urbana-Champaign","institution_ids":["https://openalex.org/I157725225"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5081839833"],"corresponding_institution_ids":["https://openalex.org/I133543626","https://openalex.org/I157725225"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":0.7486,"has_fulltext":true,"cited_by_count":29,"citation_normalized_percentile":{"value":0.72633706,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"14","issue":"5","first_page":"610","last_page":"617"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13280","display_name":"Biomedical and Engineering Education","score":0.9747999906539917,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9472000002861023,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/course","display_name":"Course (navigation)","score":0.7362968921661377},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6106407642364502},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5072876811027527},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.29044678807258606},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.10588666796684265}],"concepts":[{"id":"https://openalex.org/C2777552389","wikidata":"https://www.wikidata.org/wiki/Q1962728","display_name":"Course (navigation)","level":2,"score":0.7362968921661377},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6106407642364502},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5072876811027527},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.29044678807258606},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.10588666796684265},{"id":"https://openalex.org/C146978453","wikidata":"https://www.wikidata.org/wiki/Q3798668","display_name":"Aerospace engineering","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002140","descriptor_name":"California","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002140","descriptor_name":"California","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002140","descriptor_name":"California","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003479","descriptor_name":"Curriculum","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003479","descriptor_name":"Curriculum","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003479","descriptor_name":"Curriculum","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007858","descriptor_name":"Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007858","descriptor_name":"Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007858","descriptor_name":"Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014495","descriptor_name":"Universities","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014495","descriptor_name":"Universities","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014495","descriptor_name":"Universities","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbt005","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbt005","pdf_url":"https://academic.oup.com/bib/article-pdf/14/5/610/580191/bbt005.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23449003","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23449003","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:scholarship.claremont.edu:hmc_fac_pub-1892","is_oa":false,"landing_page_url":"http://bib.oxfordjournals.org/content/early/2013/02/28/bib.bbt005","pdf_url":null,"source":{"id":"https://openalex.org/S4377196412","display_name":"Scholarship - Claremont (Claremont Colleges)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I872248612","host_organization_name":"Claremont Colleges","host_organization_lineage":["https://openalex.org/I872248612"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"All HMC Faculty Publications and Research","raw_type":"text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbt005","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbt005","pdf_url":"https://academic.oup.com/bib/article-pdf/14/5/610/580191/bbt005.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education","score":0.8500000238418579}],"awards":[{"id":"https://openalex.org/G1857234051","display_name":"Laptop Robotics: Expanding students access and robotics application by mobilizing existing resources","funder_award_id":"0536173","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G2841039000","display_name":null,"funder_award_id":"52006301","funder_id":"https://openalex.org/F4320306082","funder_display_name":"Howard Hughes Medical Institute"},{"id":"https://openalex.org/G3008467821","display_name":"CPATH-2: Modular CS1 from the Inside Out: Computational Thinking for all STEM Students","funder_award_id":"0939149","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306082","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90"},{"id":"https://openalex.org/F4320309332","display_name":"Harvey Mudd College","ror":"https://ror.org/025ecfn45"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2160349075.pdf","grobid_xml":"https://content.openalex.org/works/W2160349075.grobid-xml"},"referenced_works_count":8,"referenced_works":["https://openalex.org/W1520972049","https://openalex.org/W1978766282","https://openalex.org/W1979196954","https://openalex.org/W1982170558","https://openalex.org/W2066639500","https://openalex.org/W2074765208","https://openalex.org/W2108943567","https://openalex.org/W2134579178"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W4318717247","https://openalex.org/W2317874921","https://openalex.org/W2736755255","https://openalex.org/W4362648715","https://openalex.org/W3180276870","https://openalex.org/W2009385780","https://openalex.org/W3082623308","https://openalex.org/W3120503679","https://openalex.org/W2359390960"],"abstract_inverted_index":{"We":[0],"believe":[1],"that":[2,56,77],"undergraduate":[3,75],"biology":[4],"students":[5,50,79],"must":[6],"acquire":[7,51],"a":[8,17,52,73],"foundational":[9],"background":[10],"in":[11,27,46,87,92],"computing":[12],"including":[13],"how":[14],"to":[15,37],"formulate":[16],"computational":[18,83],"problem;":[19],"develop":[20],"an":[21],"algorithmic":[22],"solution;":[23],"implement":[24],"their":[25,35,64],"solution":[26],"software":[28],"and":[29,33,60,85,99,104,111],"then":[30],"test,":[31],"document":[32],"use":[34,59],"code":[36],"explore":[38],"biological":[39],"phenomena.":[40],"Moreover,":[41],"by":[42],"learning":[43,112],"these":[44],"skills":[45],"the":[47,80,88,97,102],"first":[48],"year,":[49],"powerful":[53],"tool":[54],"set":[55],"they":[57],"can":[58],"build":[61],"on":[62,108],"throughout":[63],"studies.":[65],"To":[66],"address":[67],"this":[68],"need,":[69],"we":[70],"have":[71],"developed":[72],"first-year":[74],"course":[76,103],"teaches":[78],"foundations":[81],"of":[82,90,101],"thinking":[84],"programming":[86],"context":[89],"problems":[91],"biology.":[93],"This":[94],"article":[95],"describes":[96],"structure":[98],"content":[100],"summarizes":[105],"assessment":[106],"data":[107],"both":[109],"affective":[110],"outcomes.":[113]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":2},{"year":2014,"cited_by_count":5}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
