{"id":"https://openalex.org/W2136522326","doi":"https://doi.org/10.1093/bib/bbt003","title":"Understanding and identifying amino acid repeats","display_name":"Understanding and identifying amino acid repeats","publication_year":2013,"publication_date":"2013-02-14","ids":{"openalex":"https://openalex.org/W2136522326","doi":"https://doi.org/10.1093/bib/bbt003","mag":"2136522326","pmid":"https://pubmed.ncbi.nlm.nih.gov/23418055"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbt003","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbt003","pdf_url":"https://academic.oup.com/bib/article-pdf/15/4/582/1137832/bbt003.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bib/article-pdf/15/4/582/1137832/bbt003.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5021602427","display_name":"Hong Luo","orcid":"https://orcid.org/0000-0001-5643-7525"},"institutions":[{"id":"https://openalex.org/I913481162","display_name":"Wageningen University & Research","ror":"https://ror.org/04qw24q55","country_code":"NL","type":"education","lineage":["https://openalex.org/I913481162"]}],"countries":["NL"],"is_corresponding":true,"raw_author_name":"H. Luo","raw_affiliation_strings":["Wageningen University and Research Center","Wageningen University Laboratory of Bioinformatics, Radix, Droevendaalsesteeg 1, 6708 PB Wageningen, the Netherlands"],"affiliations":[{"raw_affiliation_string":"Wageningen University and Research Center","institution_ids":["https://openalex.org/I913481162"]},{"raw_affiliation_string":"Wageningen University Laboratory of Bioinformatics, Radix, Droevendaalsesteeg 1, 6708 PB Wageningen, the Netherlands","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5057335978","display_name":"Harm Nijveen","orcid":"https://orcid.org/0000-0002-9167-4945"},"institutions":[{"id":"https://openalex.org/I913481162","display_name":"Wageningen University & Research","ror":"https://ror.org/04qw24q55","country_code":"NL","type":"education","lineage":["https://openalex.org/I913481162"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"H. Nijveen","raw_affiliation_strings":["Wageningen University and Research Center","Wageningen University Laboratory of Bioinformatics, Radix, Droevendaalsesteeg 1, 6708 PB Wageningen, the Netherlands"],"affiliations":[{"raw_affiliation_string":"Wageningen University and Research Center","institution_ids":["https://openalex.org/I913481162"]},{"raw_affiliation_string":"Wageningen University Laboratory of Bioinformatics, Radix, Droevendaalsesteeg 1, 6708 PB Wageningen, the Netherlands","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5021602427"],"corresponding_institution_ids":["https://openalex.org/I913481162"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":2.9607,"has_fulltext":true,"cited_by_count":88,"citation_normalized_percentile":{"value":0.91368049,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"15","issue":"4","first_page":"582","last_page":"591"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10949","display_name":"Genetic Neurodegenerative Diseases","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/2804","display_name":"Cellular and Molecular Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10949","display_name":"Genetic Neurodegenerative Diseases","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/2804","display_name":"Cellular and Molecular Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10497","display_name":"Fungal and yeast genetics research","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5888720154762268},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.5084266066551208},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5037927031517029},{"id":"https://openalex.org/keywords/protein-domain","display_name":"Protein domain","score":0.48422694206237793},{"id":"https://openalex.org/keywords/proteome","display_name":"Proteome","score":0.4479595124721527},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.42880070209503174},{"id":"https://openalex.org/keywords/leucine-rich-repeat","display_name":"Leucine-rich repeat","score":0.42731574177742004},{"id":"https://openalex.org/keywords/mechanism","display_name":"Mechanism (biology)","score":0.4248828887939453},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3635542392730713}],"concepts":[{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5888720154762268},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.5084266066551208},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5037927031517029},{"id":"https://openalex.org/C144292202","wikidata":"https://www.wikidata.org/wiki/Q898273","display_name":"Protein domain","level":3,"score":0.48422694206237793},{"id":"https://openalex.org/C104397665","wikidata":"https://www.wikidata.org/wiki/Q860947","display_name":"Proteome","level":2,"score":0.4479595124721527},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.42880070209503174},{"id":"https://openalex.org/C99545290","wikidata":"https://www.wikidata.org/wiki/Q935326","display_name":"Leucine-rich repeat","level":3,"score":0.42731574177742004},{"id":"https://openalex.org/C89611455","wikidata":"https://www.wikidata.org/wiki/Q6804646","display_name":"Mechanism (biology)","level":2,"score":0.4248828887939453},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3635542392730713},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020440","descriptor_name":"Gene Duplication","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020440","descriptor_name":"Gene Duplication","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020440","descriptor_name":"Gene Duplication","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020449","descriptor_name":"Repetitive Sequences, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020449","descriptor_name":"Repetitive Sequences, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020449","descriptor_name":"Repetitive Sequences, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bib/bbt003","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbt003","pdf_url":"https://academic.oup.com/bib/article-pdf/15/4/582/1137832/bbt003.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23418055","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23418055","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.939.22","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.939.22","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bib.oxfordjournals.org/content/15/4/582.full.pdf","raw_type":"text"},{"id":"pmh:oai:europepmc.org:3072519","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4103538","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:wur:oai:library.wur.nl:wurpubs/437176","is_oa":false,"landing_page_url":"https://research.wur.nl/en/publications/understanding-and-identifying-amino-acid-repeats","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Briefings in Bioinformatics, 15(4), 582 - 591","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bib/bbt003","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbt003","pdf_url":"https://academic.oup.com/bib/article-pdf/15/4/582/1137832/bbt003.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320328786","display_name":"Norwegian Biodiversity Information Centre","ror":"https://ror.org/04jnzhb65"},{"id":"https://openalex.org/F4320334952","display_name":"Wageningen University and Research","ror":"https://ror.org/04qw24q55"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2136522326.pdf","grobid_xml":"https://content.openalex.org/works/W2136522326.grobid-xml"},"referenced_works_count":106,"referenced_works":["https://openalex.org/W1513332069","https://openalex.org/W1554663460","https://openalex.org/W1573897044","https://openalex.org/W1647671624","https://openalex.org/W1794209129","https://openalex.org/W1935763178","https://openalex.org/W1965998064","https://openalex.org/W1967195968","https://openalex.org/W1967382114","https://openalex.org/W1972394537","https://openalex.org/W1977278056","https://openalex.org/W1978365676","https://openalex.org/W1979319736","https://openalex.org/W1980073965","https://openalex.org/W1980947093","https://openalex.org/W1981045929","https://openalex.org/W1981092387","https://openalex.org/W1987393189","https://openalex.org/W1988688918","https://openalex.org/W1991731239","https://openalex.org/W1992753858","https://openalex.org/W1995972219","https://openalex.org/W1996762225","https://openalex.org/W2008560636","https://openalex.org/W2010407417","https://openalex.org/W2012821335","https://openalex.org/W2013021944","https://openalex.org/W2016685368","https://openalex.org/W2018972218","https://openalex.org/W2022366485","https://openalex.org/W2024831971","https://openalex.org/W2033279214","https://openalex.org/W2041404167","https://openalex.org/W2041814584","https://openalex.org/W2041905826","https://openalex.org/W2045342295","https://openalex.org/W2046239250","https://openalex.org/W2046535373","https://openalex.org/W2049396855","https://openalex.org/W2049631853","https://openalex.org/W2054903577","https://openalex.org/W2055382743","https://openalex.org/W2055644676","https://openalex.org/W2057715520","https://openalex.org/W2059704674","https://openalex.org/W2059805279","https://openalex.org/W2060013127","https://openalex.org/W2061078854","https://openalex.org/W2064470502","https://openalex.org/W2064903987","https://openalex.org/W2073127551","https://openalex.org/W2073745520","https://openalex.org/W2074231493","https://openalex.org/W2076014796","https://openalex.org/W2080892263","https://openalex.org/W2087064593","https://openalex.org/W2092670169","https://openalex.org/W2094104050","https://openalex.org/W2094519647","https://openalex.org/W2096950454","https://openalex.org/W2097838377","https://openalex.org/W2097891553","https://openalex.org/W2105118494","https://openalex.org/W2105144801","https://openalex.org/W2105961968","https://openalex.org/W2106523371","https://openalex.org/W2106612397","https://openalex.org/W2107903949","https://openalex.org/W2107934935","https://openalex.org/W2108570063","https://openalex.org/W2111541375","https://openalex.org/W2112300411","https://openalex.org/W2112792893","https://openalex.org/W2112858958","https://openalex.org/W2114077379","https://openalex.org/W2114436942","https://openalex.org/W2123178347","https://openalex.org/W2124658247","https://openalex.org/W2125838338","https://openalex.org/W2129328366","https://openalex.org/W2132505033","https://openalex.org/W2134889034","https://openalex.org/W2135049964","https://openalex.org/W2135123683","https://openalex.org/W2138751727","https://openalex.org/W2141885858","https://openalex.org/W2143210482","https://openalex.org/W2145268834","https://openalex.org/W2147095787","https://openalex.org/W2147595457","https://openalex.org/W2148563894","https://openalex.org/W2151034762","https://openalex.org/W2152398705","https://openalex.org/W2154610073","https://openalex.org/W2156226201","https://openalex.org/W2156297179","https://openalex.org/W2156875887","https://openalex.org/W2158714788","https://openalex.org/W2161505943","https://openalex.org/W2168475193","https://openalex.org/W2171293165","https://openalex.org/W2342204193","https://openalex.org/W2612240612","https://openalex.org/W2913467544","https://openalex.org/W4205911826","https://openalex.org/W4210623056"],"related_works":["https://openalex.org/W171823940","https://openalex.org/W2559424312","https://openalex.org/W2045152476","https://openalex.org/W2563156805","https://openalex.org/W2111396770","https://openalex.org/W4387296451","https://openalex.org/W1997822911","https://openalex.org/W2123302438","https://openalex.org/W4324133270","https://openalex.org/W2160155425"],"abstract_inverted_index":{"Amino":[0],"acid":[1,222],"repeats":[2],"(AARs)":[3],"are":[4,49,76,83,105,130,167],"abundant":[5,119],"in":[6,13,33,79,100,108,120,136],"protein":[7,14,137,241],"sequences.":[8],"They":[9,82],"have":[10,204],"particular":[11],"roles":[12,99],"function":[15,43,150],"and":[16,30,39,72,91,117,127,151,176,192,227],"evolution.":[17],"Simple":[18],"repeat":[19,34,71,165,195,211],"patterns":[20,58],"generated":[21],"by":[22,93,169],"DNA":[23],"slippage":[24],"tend":[25],"to":[26,45,53,61,185,207,218],"introduce":[27],"length":[28,48],"variations":[29],"point":[31],"mutations":[32],"regions.":[35],"Loss":[36],"of":[37,41,114,147,163,172,236,240],"normal":[38],"gain":[40],"abnormal":[42],"owing":[44],"their":[46,124,148,229],"variable":[47],"potential":[50],"risks":[51],"leading":[52],"diseases.":[54],"Repeats":[55],"with":[56,209],"complex":[57],"mostly":[59],"refer":[60],"the":[62,68,140,144,164,220,237],"functional":[63,128],"domain":[64],"repeats,":[65],"such":[66],"as":[67,161],"well-known":[69],"leucine-rich":[70],"WD":[73],"repeat,":[74],"which":[75,96],"frequently":[77],"involved":[78],"protein\u2013protein":[80],"interaction.":[81],"mainly":[84],"derived":[85],"from":[86],"internal":[87],"gene":[88],"duplication":[89],"events":[90,175],"stabilized":[92],"\u2018gate-keeper\u2019":[94],"residues,":[95],"play":[97],"crucial":[98],"preventing":[101],"inter-domain":[102],"aggregation.":[103],"AARs":[104,135],"widely":[106],"distributed":[107],"different":[109,198,202,210],"proteomes":[110],"across":[111],"a":[112,170,187],"variety":[113],"taxonomic":[115],"ranges,":[116],"especially":[118],"eukaryotic":[121],"proteins.":[122],"However,":[123],"specific":[125],"evolutionary":[126,152,174],"scenarios":[129],"still":[131],"poorly":[132],"understood.":[133],"Identifying":[134],"sequences":[138],"is":[139,157,182],"first":[141],"step":[142],"for":[143,190],"further":[145],"investigation":[146],"biological":[149,238],"mechanism.":[153],"In":[154,213],"principle,":[155],"this":[156,214],"an":[158,233],"NP-hard":[159],"problem,":[160],"most":[162],"fragments":[166],"shaped":[168],"series":[171],"sophisticated":[173],"become":[177],"latent":[178],"periodical":[179],"patterns.":[180,196,212],"It":[181],"not":[183],"possible":[184],"define":[186],"uniform":[188],"criterion":[189],"detecting":[191],"verifying":[193],"various":[194],"Instead,":[197],"algorithms":[199,224],"based":[200,231],"on":[201,232],"strategies":[203,230],"been":[205],"developed":[206],"cope":[208],"review,":[215],"we":[216],"attempt":[217],"describe":[219],"amino":[221],"repeat-detection":[223],"currently":[225],"available":[226],"compare":[228],"in-depth":[234],"analysis":[235],"significance":[239],"repeats.":[242]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":12},{"year":2023,"cited_by_count":12},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":14},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":8},{"year":2015,"cited_by_count":7},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":5}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
