{"id":"https://openalex.org/W2142153593","doi":"https://doi.org/10.1093/bib/bbs078","title":"Comparability and reproducibility of biomedical data","display_name":"Comparability and reproducibility of biomedical data","publication_year":2012,"publication_date":"2012-11-27","ids":{"openalex":"https://openalex.org/W2142153593","doi":"https://doi.org/10.1093/bib/bbs078","mag":"2142153593","pmid":"https://pubmed.ncbi.nlm.nih.gov/23193203"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbs078","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbs078","pdf_url":"https://academic.oup.com/bib/article-pdf/14/4/391/479412/bbs078.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bib/article-pdf/14/4/391/479412/bbs078.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5009785426","display_name":"Yunda Huang","orcid":"https://orcid.org/0000-0003-1546-6172"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Y. Huang","raw_affiliation_strings":["Fred Hutchinson Cancer Research Center, 1100 Fairview Avenue North, Mailstop M2-C200, Seattle, WA 98109-1024, USA"],"affiliations":[{"raw_affiliation_string":"Fred Hutchinson Cancer Research Center, 1100 Fairview Avenue North, Mailstop M2-C200, Seattle, WA 98109-1024, USA","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5005741024","display_name":"Rapha\u00ebl Gottardo","orcid":"https://orcid.org/0000-0002-3867-0232"},"institutions":[{"id":"https://openalex.org/I4210089486","display_name":"Fred Hutch Cancer Center","ror":"https://ror.org/007ps6h72","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210089486"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"R. Gottardo","raw_affiliation_strings":["Fred Hutchinson Cancer Research Center","University of Washingon","Fred Hutchinson Cancer Research Center, 1100 Fairview Avenue North, Mailstop M2-C200, Seattle, WA 98109-1024, USA"],"affiliations":[{"raw_affiliation_string":"Fred Hutchinson Cancer Research Center","institution_ids":["https://openalex.org/I4210089486"]},{"raw_affiliation_string":"University of Washingon","institution_ids":[]},{"raw_affiliation_string":"Fred Hutchinson Cancer Research Center, 1100 Fairview Avenue North, Mailstop M2-C200, Seattle, WA 98109-1024, USA","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5005741024"],"corresponding_institution_ids":["https://openalex.org/I4210089486"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":1.8825,"has_fulltext":true,"cited_by_count":52,"citation_normalized_percentile":{"value":0.85680977,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"14","issue":"4","first_page":"391","last_page":"401"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9921000003814697,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9847999811172485,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/comparability","display_name":"Comparability","score":0.8915075063705444},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7685929536819458},{"id":"https://openalex.org/keywords/protocol","display_name":"Protocol (science)","score":0.6264098882675171},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.6158367395401001},{"id":"https://openalex.org/keywords/risk-analysis","display_name":"Risk analysis (engineering)","score":0.5000917911529541},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.48852837085723877},{"id":"https://openalex.org/keywords/quality","display_name":"Quality (philosophy)","score":0.4495837986469269},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.4408004581928253},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4111180305480957},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.15714946389198303},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.08600270748138428}],"concepts":[{"id":"https://openalex.org/C197947376","wikidata":"https://www.wikidata.org/wiki/Q5155608","display_name":"Comparability","level":2,"score":0.8915075063705444},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7685929536819458},{"id":"https://openalex.org/C2780385302","wikidata":"https://www.wikidata.org/wiki/Q367158","display_name":"Protocol (science)","level":3,"score":0.6264098882675171},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.6158367395401001},{"id":"https://openalex.org/C112930515","wikidata":"https://www.wikidata.org/wiki/Q4389547","display_name":"Risk analysis (engineering)","level":1,"score":0.5000917911529541},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.48852837085723877},{"id":"https://openalex.org/C2779530757","wikidata":"https://www.wikidata.org/wiki/Q1207505","display_name":"Quality (philosophy)","level":2,"score":0.4495837986469269},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.4408004581928253},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4111180305480957},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.15714946389198303},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.08600270748138428},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C204787440","wikidata":"https://www.wikidata.org/wiki/Q188504","display_name":"Alternative medicine","level":2,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D015201","descriptor_name":"Meta-Analysis as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015201","descriptor_name":"Meta-Analysis as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015201","descriptor_name":"Meta-Analysis as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017712","descriptor_name":"Peer Review, Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017712","descriptor_name":"Peer Review, Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017712","descriptor_name":"Peer Review, Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbs078","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbs078","pdf_url":"https://academic.oup.com/bib/article-pdf/14/4/391/479412/bbs078.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23193203","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23193203","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:2708833","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3713713","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbs078","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbs078","pdf_url":"https://academic.oup.com/bib/article-pdf/14/4/391/479412/bbs078.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2058371029","display_name":"Gay City Health Project - to reduce HIV transmission among gay and bisexual men through an innovative, science-based health promotion intervention","funder_award_id":"OPP103","funder_id":"https://openalex.org/F4320306137","funder_display_name":"Bill and Melinda Gates Foundation"},{"id":"https://openalex.org/G2963058703","display_name":null,"funder_award_id":"AI08998","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3301824161","display_name":null,"funder_award_id":"OPP1032317","funder_id":"https://openalex.org/F4320306137","funder_display_name":"Bill and Melinda Gates Foundation"},{"id":"https://openalex.org/G3832624520","display_name":null,"funder_award_id":"AI068635","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4672800965","display_name":"Save the Children Federation, Inc. - to help prevent large-scale population displacements by continuing drought-relief activities in northern Afghanistan","funder_award_id":"OPP10323","funder_id":"https://openalex.org/F4320306137","funder_display_name":"Bill and Melinda Gates Foundation"},{"id":"https://openalex.org/G4917697489","display_name":"International Planned Parenthood Worldwide, Inc. - to strengthen family planning and education services and develop Gates Youth Centers for young people in nine South African communities","funder_award_id":"OPP10","funder_id":"https://openalex.org/F4320306137","funder_display_name":"Bill and Melinda Gates Foundation"}],"funders":[{"id":"https://openalex.org/F4320306137","display_name":"Bill and Melinda Gates Foundation","ror":"https://ror.org/0456r8d26"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2142153593.pdf","grobid_xml":"https://content.openalex.org/works/W2142153593.grobid-xml"},"referenced_works_count":53,"referenced_works":["https://openalex.org/W45420720","https://openalex.org/W611112179","https://openalex.org/W1544923801","https://openalex.org/W1941148137","https://openalex.org/W1965827638","https://openalex.org/W1969761972","https://openalex.org/W1972416794","https://openalex.org/W1977032720","https://openalex.org/W1977859620","https://openalex.org/W1988607812","https://openalex.org/W1988790447","https://openalex.org/W1992794281","https://openalex.org/W2011633952","https://openalex.org/W2024360391","https://openalex.org/W2031398997","https://openalex.org/W2031739072","https://openalex.org/W2049801811","https://openalex.org/W2053556067","https://openalex.org/W2059288813","https://openalex.org/W2065258600","https://openalex.org/W2084105363","https://openalex.org/W2087090401","https://openalex.org/W2087295215","https://openalex.org/W2089604928","https://openalex.org/W2096192437","https://openalex.org/W2096435507","https://openalex.org/W2104279568","https://openalex.org/W2107018762","https://openalex.org/W2107208924","https://openalex.org/W2107665951","https://openalex.org/W2108759026","https://openalex.org/W2109384743","https://openalex.org/W2114850508","https://openalex.org/W2116650193","https://openalex.org/W2118030557","https://openalex.org/W2118957901","https://openalex.org/W2120865735","https://openalex.org/W2123831736","https://openalex.org/W2137499573","https://openalex.org/W2138019532","https://openalex.org/W2139834510","https://openalex.org/W2140804850","https://openalex.org/W2141222206","https://openalex.org/W2141407136","https://openalex.org/W2142846876","https://openalex.org/W2143964357","https://openalex.org/W2150038257","https://openalex.org/W2150934173","https://openalex.org/W2153006842","https://openalex.org/W2160697532","https://openalex.org/W2167963368","https://openalex.org/W2412409504","https://openalex.org/W2912934387"],"related_works":["https://openalex.org/W2365594754","https://openalex.org/W2575292835","https://openalex.org/W4287902769","https://openalex.org/W3001140700","https://openalex.org/W2995453361","https://openalex.org/W3021704418","https://openalex.org/W4390295458","https://openalex.org/W1990407237","https://openalex.org/W2092282998","https://openalex.org/W2050526033"],"abstract_inverted_index":{"With":[0,80],"the":[1,50,55,61,81,85,94,99,116,128,172,224,236,239],"development":[2],"of":[3,26,33,39,49,63,87,96,98,130,132,174,194,223,235],"novel":[4,190],"assay":[5],"technologies,":[6],"biomedical":[7,228],"experiments":[8],"and":[9,46,58,60,152,187,230,232],"analyses":[10,204],"have":[11],"gone":[12],"through":[13],"substantial":[14],"evolution.":[15],"Today,":[16],"a":[17,77,88,146,175],"typical":[18],"experiment":[19],"can":[20,67],"simultaneously":[21],"measure":[22],"hundreds":[23],"to":[24,43,73,75,93,108,127,177,183,201,213],"thousands":[25],"individual":[27],"features":[28],"(e.g.":[29],"genes)":[30],"in":[31,37,54,155],"dozens":[32],"biological":[34],"conditions,":[35],"resulting":[36,154],"gigabytes":[38],"data":[40,56,135,197,209],"that":[41,110],"need":[42],"be":[44,68,178,243],"processed":[45],"analyzed.":[47],"Because":[48],"multiple":[51,208],"steps":[52],"involved":[53],"generation":[57],"analysis":[59],"lack":[62,95,129],"details":[64],"provided,":[65],"it":[66,168],"difficult":[69],"for":[70,171],"independent":[71],"researchers":[72,102],"try":[74],"reproduce":[76],"published":[78,100,121,147],"study.":[79],"recent":[82,225],"outrage":[83],"following":[84],"halt":[86],"cancer":[89],"clinical":[90,160],"trial":[91],"due":[92,126],"reproducibility":[97,229],"study,":[101],"are":[103,113,211],"now":[104],"facing":[105],"heavy":[106],"pressure":[107],"ensure":[109],"their":[111],"results":[112,173],"reproducible.":[114],"Despite":[115],"global":[117],"demand,":[118],"too":[119],"many":[120],"studies":[122,158],"remain":[123],"non-reproducible":[124],"mainly":[125],"availability":[131,193],"experimental":[133],"protocol,":[134],"and/or":[136],"computer":[137],"code.":[138],"Scientific":[139],"discovery":[140],"is":[141,169],"an":[142],"iterative":[143],"process,":[144],"where":[145,207,238],"study":[148,176],"generates":[149],"new":[150,156,215],"knowledge":[151],"data,":[153],"follow-up":[157],"or":[159,181],"trials":[161],"based":[162],"on":[163,189],"these":[164],"results.":[165],"As":[166],"such,":[167],"important":[170],"quickly":[179],"confirmed":[180],"discarded":[182],"avoid":[184],"wasting":[185],"time":[186],"money":[188],"projects.":[191],"The":[192],"high-quality,":[195],"reproducible":[196],"will":[198],"also":[199],"lead":[200],"more":[202],"powerful":[203],"(or":[205],"meta-analyses)":[206],"sets":[210],"combined":[212],"generate":[214],"knowledge.":[216],"In":[217],"this":[218],"article,":[219],"we":[220],"review":[221],"some":[222,234],"developments":[226],"regarding":[227],"comparability":[231],"discuss":[233],"areas":[237],"overall":[240],"field":[241],"could":[242],"improved.":[244]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":6},{"year":2015,"cited_by_count":6},{"year":2014,"cited_by_count":6},{"year":2013,"cited_by_count":2}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
