{"id":"https://openalex.org/W2154552837","doi":"https://doi.org/10.1093/bib/bbs063","title":"State-of-the-art technology in modern computer-aided drug design","display_name":"State-of-the-art technology in modern computer-aided drug design","publication_year":2012,"publication_date":"2012-11-12","ids":{"openalex":"https://openalex.org/W2154552837","doi":"https://doi.org/10.1093/bib/bbs063","mag":"2154552837","pmid":"https://pubmed.ncbi.nlm.nih.gov/23148324"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbs063","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbs063","pdf_url":"https://academic.oup.com/bib/article-pdf/14/6/745/471080/bbs063.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/14/6/745/471080/bbs063.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5062612772","display_name":"\u0393\u03b5\u03ce\u03c1\u03b3\u03b9\u03bf\u03c2 \u0394\u03ac\u03bb\u03ba\u03b1\u03c2","orcid":"https://orcid.org/0000-0003-2628-047X"},"institutions":[{"id":"https://openalex.org/I4210119046","display_name":"Zero to Three","ror":"https://ror.org/01qvk6016","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210119046"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"G. A. Dalkas","raw_affiliation_strings":["*These authors contributed equally to this work","Bioinformatics and Medical Informatics Team, Biomedical Research Foundation, Academy of Athens, Soranou Efessiou 4, Athens 11527, Greece"],"affiliations":[{"raw_affiliation_string":"*These authors contributed equally to this work","institution_ids":["https://openalex.org/I4210119046"]},{"raw_affiliation_string":"Bioinformatics and Medical Informatics Team, Biomedical Research Foundation, Academy of Athens, Soranou Efessiou 4, Athens 11527, Greece","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036815066","display_name":"Dimitri\u03bfs Vlachakis","orcid":"https://orcid.org/0000-0003-1823-6102"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"D. Vlachakis","raw_affiliation_strings":["Bioinformatics and Medical Informatics Team, Biomedical Research Foundation, Academy of Athens, Soranou Efessiou 4, Athens 11527, Greece"],"affiliations":[{"raw_affiliation_string":"Bioinformatics and Medical Informatics Team, Biomedical Research Foundation, Academy of Athens, Soranou Efessiou 4, Athens 11527, Greece","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068957160","display_name":"Dimosthenis Tsagkrasoulis","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"D. Tsagkrasoulis","raw_affiliation_strings":["Bioinformatics and Medical Informatics Team, Biomedical Research Foundation, Academy of Athens, Soranou Efessiou 4, Athens 11527, Greece"],"affiliations":[{"raw_affiliation_string":"Bioinformatics and Medical Informatics Team, Biomedical Research Foundation, Academy of Athens, Soranou Efessiou 4, Athens 11527, Greece","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013473990","display_name":"Anastasia Kastania","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"A. Kastania","raw_affiliation_strings":["Bioinformatics and Medical Informatics Team, Biomedical Research Foundation, Academy of Athens, Soranou Efessiou 4, Athens 11527, Greece"],"affiliations":[{"raw_affiliation_string":"Bioinformatics and Medical Informatics Team, Biomedical Research Foundation, Academy of Athens, Soranou Efessiou 4, Athens 11527, Greece","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5052164166","display_name":"\u03a3\u03bf\u03c6\u03af\u03b1 \u039a\u03bf\u03c3\u03c3\u03af\u03b4\u03b1","orcid":"https://orcid.org/0000-0002-8841-2864"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"S. Kossida","raw_affiliation_strings":["Bioinformatics and Medical Informatics Team, Biomedical Research Foundation, Academy of Athens, Soranou Efessiou 4, Athens 11527, Greece"],"affiliations":[{"raw_affiliation_string":"Bioinformatics and Medical Informatics Team, Biomedical Research Foundation, Academy of Athens, Soranou Efessiou 4, Athens 11527, Greece","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5052164166"],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":3.7064,"has_fulltext":true,"cited_by_count":39,"citation_normalized_percentile":{"value":0.93627168,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"14","issue":"6","first_page":"745","last_page":"752"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11663","display_name":"Viral Infectious Diseases and Gene Expression in Insects","score":0.9332000017166138,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/expediting","display_name":"Expediting","score":0.9555492401123047},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.6805432438850403},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6194373369216919},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.5162649154663086},{"id":"https://openalex.org/keywords/pharmaceutical-industry","display_name":"Pharmaceutical industry","score":0.5137994885444641},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4299238920211792},{"id":"https://openalex.org/keywords/risk-analysis","display_name":"Risk analysis (engineering)","score":0.38911232352256775},{"id":"https://openalex.org/keywords/nanotechnology","display_name":"Nanotechnology","score":0.3367350101470947},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.190270334482193},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.17795255780220032},{"id":"https://openalex.org/keywords/systems-engineering","display_name":"Systems engineering","score":0.1639382541179657},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.14335286617279053},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.12945568561553955},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09655380249023438},{"id":"https://openalex.org/keywords/materials-science","display_name":"Materials science","score":0.07449230551719666}],"concepts":[{"id":"https://openalex.org/C134448949","wikidata":"https://www.wikidata.org/wiki/Q1384274","display_name":"Expediting","level":2,"score":0.9555492401123047},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.6805432438850403},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6194373369216919},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.5162649154663086},{"id":"https://openalex.org/C2779652045","wikidata":"https://www.wikidata.org/wiki/Q507443","display_name":"Pharmaceutical industry","level":2,"score":0.5137994885444641},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4299238920211792},{"id":"https://openalex.org/C112930515","wikidata":"https://www.wikidata.org/wiki/Q4389547","display_name":"Risk analysis (engineering)","level":1,"score":0.38911232352256775},{"id":"https://openalex.org/C171250308","wikidata":"https://www.wikidata.org/wiki/Q11468","display_name":"Nanotechnology","level":1,"score":0.3367350101470947},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.190270334482193},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.17795255780220032},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.1639382541179657},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.14335286617279053},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.12945568561553955},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09655380249023438},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.07449230551719666}],"mesh":[{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017076","descriptor_name":"Computer-Aided Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017076","descriptor_name":"Computer-Aided Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017076","descriptor_name":"Computer-Aided Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbs063","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbs063","pdf_url":"https://academic.oup.com/bib/article-pdf/14/6/745/471080/bbs063.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23148324","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23148324","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bib/bbs063","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbs063","pdf_url":"https://academic.oup.com/bib/article-pdf/14/6/745/471080/bbs063.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.6200000047683716}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2154552837.pdf","grobid_xml":"https://content.openalex.org/works/W2154552837.grobid-xml"},"referenced_works_count":38,"referenced_works":["https://openalex.org/W32559065","https://openalex.org/W102519392","https://openalex.org/W182082329","https://openalex.org/W1963745691","https://openalex.org/W1971049801","https://openalex.org/W1974645077","https://openalex.org/W1977362373","https://openalex.org/W1978082383","https://openalex.org/W1978795084","https://openalex.org/W1983211449","https://openalex.org/W1989038175","https://openalex.org/W1993077783","https://openalex.org/W2000196103","https://openalex.org/W2022655521","https://openalex.org/W2024012070","https://openalex.org/W2026141986","https://openalex.org/W2033528502","https://openalex.org/W2041812519","https://openalex.org/W2077488776","https://openalex.org/W2085581041","https://openalex.org/W2085732173","https://openalex.org/W2087978484","https://openalex.org/W2091552567","https://openalex.org/W2095619330","https://openalex.org/W2096705956","https://openalex.org/W2107774002","https://openalex.org/W2115763420","https://openalex.org/W2118571345","https://openalex.org/W2118605391","https://openalex.org/W2120551199","https://openalex.org/W2127290087","https://openalex.org/W2135244004","https://openalex.org/W2148635114","https://openalex.org/W2149302140","https://openalex.org/W2153983456","https://openalex.org/W2161134038","https://openalex.org/W2165408431","https://openalex.org/W2622928986"],"related_works":["https://openalex.org/W2071999521","https://openalex.org/W2085395339","https://openalex.org/W2024632604","https://openalex.org/W2068005943","https://openalex.org/W4317792299","https://openalex.org/W2010478499","https://openalex.org/W2050011582","https://openalex.org/W2051220639","https://openalex.org/W2071715249","https://openalex.org/W2091881573"],"abstract_inverted_index":{"The":[0],"quest":[1],"for":[2,47,109,113],"small":[3,55,68],"drug-like":[4],"compounds":[5],"that":[6,53,105],"selectively":[7],"inhibit":[8],"the":[9,21,40,62,67,85,111],"function":[10],"of":[11,31,42,66,84,97],"biological":[12],"targets":[13,59],"has":[14],"always":[15],"been":[16,107],"a":[17],"major":[18],"focus":[19],"in":[20,25,73,101],"pharmaceutical":[22],"industry":[23],"and":[24,37,60,64,76,78,87],"academia":[26],"as":[27],"well.":[28],"High-throughput":[29],"screening":[30],"compound":[32],"libraries":[33],"requires":[34],"time,":[35],"cost":[36],"resources.":[38],"Therefore,":[39],"use":[41],"alternative":[43],"methods":[44],"is":[45],"necessary":[46],"facilitating":[48],"lead":[49],"discovery.":[50],"Computational":[51],"techniques":[52],"dock":[54],"molecules":[56],"into":[57],"macromolecular":[58],"predict":[61],"affinity":[63],"activity":[65],"molecule":[69],"are":[70],"widely":[71],"used":[72],"drug":[74,103,115],"design":[75,104],"discovery,":[77],"have":[79,106],"become":[80],"an":[81,95],"integral":[82],"part":[83],"industrial":[86],"academic":[88],"research.":[89],"In":[90],"this":[91],"review,":[92],"we":[93],"present":[94],"overview":[96],"some":[98],"state-of-the-art":[99],"technologies":[100],"modern":[102],"developed":[108],"expediting":[110],"search":[112],"novel":[114],"candidates.":[116]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":9},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":2},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":6}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}
