{"id":"https://openalex.org/W2111796963","doi":"https://doi.org/10.1093/bib/bbs058","title":"Reconciliation of metabolites and biochemical reactions for metabolic networks","display_name":"Reconciliation of metabolites and biochemical reactions for metabolic networks","publication_year":2012,"publication_date":"2012-11-19","ids":{"openalex":"https://openalex.org/W2111796963","doi":"https://doi.org/10.1093/bib/bbs058","mag":"2111796963","pmid":"https://pubmed.ncbi.nlm.nih.gov/23172809"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbs058","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbs058","pdf_url":"https://academic.oup.com/bib/article-pdf/15/1/123/456230/bbs058.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bib/article-pdf/15/1/123/456230/bbs058.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100780234","display_name":"Thomas Bernard","orcid":"https://orcid.org/0000-0003-3736-1507"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I4210108542","display_name":"Schlumberger (Ireland)","ror":"https://ror.org/01mcc7007","country_code":"IE","type":"company","lineage":["https://openalex.org/I4210092184","https://openalex.org/I4210108542"]}],"countries":["CH","IE"],"is_corresponding":false,"raw_author_name":"T. Bernard","raw_affiliation_strings":["Corresponding author. Marco Pagni","Swiss Institute of Bioinformatics [Gen\u00e8ve]"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Corresponding author. Marco Pagni","institution_ids":["https://openalex.org/I4210108542"]},{"raw_affiliation_string":"Swiss Institute of Bioinformatics [Gen\u00e8ve]","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090916579","display_name":"Alan Bridge","orcid":"https://orcid.org/0000-0003-2148-9135"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"A. Bridge","raw_affiliation_strings":["Swiss-Prot Group"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Swiss-Prot Group","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091324355","display_name":"Anne Morgat","orcid":"https://orcid.org/0000-0002-1216-2969"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"A. Morgat","raw_affiliation_strings":["Swiss Institute of Bioinformatics [Gen\u00e8ve]","An algorithmic view on genomes, cells, and environments"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Swiss Institute of Bioinformatics [Gen\u00e8ve]","institution_ids":["https://openalex.org/I12708293"]},{"raw_affiliation_string":"An algorithmic view on genomes, cells, and environments","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039131441","display_name":"S\u00e9bastien Moretti","orcid":"https://orcid.org/0000-0003-3947-488X"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"S. Moretti","raw_affiliation_strings":["Swiss Institute of Bioinformatics [Gen\u00e8ve]"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Swiss Institute of Bioinformatics [Gen\u00e8ve]","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065825020","display_name":"Ioannis X\u00e9narios","orcid":"https://orcid.org/0000-0002-3413-6841"},"institutions":[{"id":"https://openalex.org/I4210097295","display_name":"Vital Research","ror":"https://ror.org/00svqj211","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210097295"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"I. Xenarios","raw_affiliation_strings":["Vital-IT"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Vital-IT","institution_ids":["https://openalex.org/I4210097295"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5006006798","display_name":"Marco Pagni","orcid":"https://orcid.org/0000-0001-9292-9463"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"M. Pagni","raw_affiliation_strings":["Swiss Institute of Bioinformatics [Gen\u00e8ve]"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Swiss Institute of Bioinformatics [Gen\u00e8ve]","institution_ids":["https://openalex.org/I12708293"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":6,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":2.5532,"has_fulltext":true,"cited_by_count":75,"citation_normalized_percentile":{"value":0.89950438,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"15","issue":"1","first_page":"123","last_page":"135"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10171","display_name":"Biofuel production and bioconversion","score":0.9940000176429749,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10404","display_name":"Enzyme Catalysis and Immobilization","score":0.9908000230789185,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metabolic-network","display_name":"Metabolic network","score":0.7161071300506592},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6346501111984253},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.508873462677002},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4855344295501709},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.4618014693260193},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4605916738510132},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.4500093162059784},{"id":"https://openalex.org/keywords/metabolic-pathway","display_name":"Metabolic pathway","score":0.4469704031944275},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2531741261482239},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1054772138595581},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.09776327013969421}],"concepts":[{"id":"https://openalex.org/C101810790","wikidata":"https://www.wikidata.org/wiki/Q2263094","display_name":"Metabolic network","level":2,"score":0.7161071300506592},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6346501111984253},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.508873462677002},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4855344295501709},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.4618014693260193},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4605916738510132},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.4500093162059784},{"id":"https://openalex.org/C192989942","wikidata":"https://www.wikidata.org/wiki/Q68685","display_name":"Metabolic pathway","level":3,"score":0.4469704031944275},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2531741261482239},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1054772138595581},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09776327013969421},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015394","descriptor_name":"Molecular Structure","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015394","descriptor_name":"Molecular Structure","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015394","descriptor_name":"Molecular Structure","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":8,"locations":[{"id":"doi:10.1093/bib/bbs058","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbs058","pdf_url":"https://academic.oup.com/bib/article-pdf/15/1/123/456230/bbs058.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23172809","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23172809","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:serval.unil.ch:BIB_6FC073DA2CF5","is_oa":true,"landing_page_url":"https://serval.unil.ch/notice/serval:BIB_6FC073DA2CF5","pdf_url":null,"source":{"id":"https://openalex.org/S4306401797","display_name":"SERVAL (Universit\u00e9 de Lausanne)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210093590","host_organization_name":"Swiss School of Archaeology in Greece","host_organization_lineage":["https://openalex.org/I4210093590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics, vol. 15, no. 1, pp. 123-135","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:iris.unil.ch:iris/194329","is_oa":true,"landing_page_url":"https://iris.unil.ch/handle/iris/194329","pdf_url":"https://iris.unil.ch/bitstreams/a015dd10-b75f-4ea8-b99b-4ef22738206d/download","source":{"id":"https://openalex.org/S7407055444","display_name":"IRIS","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"journal article"},{"id":"pmh:doi:10.5167/uzh-79186","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4406922384","display_name":"Open MIND","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:HAL:hal-00764412v1","is_oa":false,"landing_page_url":"https://inria.hal.science/hal-00764412","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Briefings in Bioinformatics, 2012, 15 (1), pp.123-135. &#x27E8;10.1093/bib/bbs058&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:europepmc.org:2882851","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3896926","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"doi:10.5167/uzh-79186","is_oa":true,"landing_page_url":"https://doi.org/10.5167/uzh-79186","pdf_url":null,"source":{"id":"https://openalex.org/S7407051291","display_name":"Universit\u00e4t Z\u00fcrich, ZORA","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.1093/bib/bbs058","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbs058","pdf_url":"https://academic.oup.com/bib/article-pdf/15/1/123/456230/bbs058.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320315885","display_name":"Australian Government","ror":"https://ror.org/0314h5y94"},{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320320915","display_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","ror":"https://ror.org/02s376052"},{"id":"https://openalex.org/F4320320924","display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung","ror":"https://ror.org/00yjd3n13"},{"id":"https://openalex.org/F4320323830","display_name":"Universit\u00e9 de Gen\u00e8ve","ror":"https://ror.org/01swzsf04"},{"id":"https://openalex.org/F4320323831","display_name":"Universit\u00e9 de Lausanne","ror":"https://ror.org/019whta54"},{"id":"https://openalex.org/F4320331322","display_name":"Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2111796963.pdf","grobid_xml":"https://content.openalex.org/works/W2111796963.grobid-xml"},"referenced_works_count":35,"referenced_works":["https://openalex.org/W595758097","https://openalex.org/W1604281503","https://openalex.org/W1975147762","https://openalex.org/W1984602113","https://openalex.org/W1985512202","https://openalex.org/W2002635898","https://openalex.org/W2009940763","https://openalex.org/W2028133290","https://openalex.org/W2028232771","https://openalex.org/W2033015112","https://openalex.org/W2033377040","https://openalex.org/W2068526246","https://openalex.org/W2075283200","https://openalex.org/W2078355959","https://openalex.org/W2082649645","https://openalex.org/W2085945924","https://openalex.org/W2085993965","https://openalex.org/W2094399313","https://openalex.org/W2096769282","https://openalex.org/W2097664794","https://openalex.org/W2098749589","https://openalex.org/W2100084634","https://openalex.org/W2103832753","https://openalex.org/W2108723491","https://openalex.org/W2124737787","https://openalex.org/W2135147680","https://openalex.org/W2148703031","https://openalex.org/W2158784643","https://openalex.org/W2159482845","https://openalex.org/W2160648343","https://openalex.org/W2165681080","https://openalex.org/W2167539386","https://openalex.org/W2170427655","https://openalex.org/W4285719527","https://openalex.org/W4294216483"],"related_works":["https://openalex.org/W2063475537","https://openalex.org/W2341681417","https://openalex.org/W1961707331","https://openalex.org/W2012938657","https://openalex.org/W1578136679","https://openalex.org/W2096004952","https://openalex.org/W2087715585","https://openalex.org/W2147962989","https://openalex.org/W4309835295","https://openalex.org/W4223538309"],"abstract_inverted_index":{"Genome-scale":[0],"metabolic":[1,12,44,72,92,129,156],"network":[2,73,157],"reconstructions":[3,22,158],"are":[4],"now":[5],"routinely":[6],"used":[7,128],"in":[8,65,86,111],"the":[9,24,33,82,87,125,133,149],"study":[10],"of":[11,20,26,48,81,91,115,122,124,139,153],"pathways,":[13],"their":[14],"evolution":[15],"and":[16,30,41,69,89,94,108,141,151,159],"design.":[17],"The":[18,46],"development":[19,150],"such":[21],"involves":[23],"integration":[25],"information":[27],"on":[28],"reactions":[29],"metabolites":[31],"from":[32,52],"scientific":[34],"literature":[35],"as":[36,38],"well":[37],"public":[39],"databases":[40],"existing":[42],"genome-scale":[43,71,155],"models.":[45,160],"reconciliation":[47,90,121],"discrepancies":[49],"between":[50],"data":[51],"these":[53,116,144],"sources":[54],"generally":[55],"requires":[56],"significant":[57],"manual":[58,137],"curation,":[59],"which":[60],"constitutes":[61],"a":[62,119],"major":[63,83],"obstacle":[64],"efforts":[66],"to":[67,101,147],"develop":[68],"apply":[70],"reconstructions.":[74],"In":[75],"this":[76,103,112],"work,":[77],"we":[78],"discuss":[79],"some":[80],"difficulties":[84],"encountered":[85],"mapping":[88],"resources":[93,117,145],"review":[95],"three":[96],"recent":[97],"initiatives":[98],"that":[99],"aim":[100,146],"accelerate":[102,148],"process,":[104],"namely":[105],"BKM-react,":[106],"MetRxn":[107],"MNXref":[109],"(presented":[110],"article).":[113],"Each":[114],"provides":[118],"pre-compiled":[120],"many":[123],"most":[126],"commonly":[127],"resources.":[130],"By":[131],"reducing":[132],"time":[134],"required":[135],"for":[136],"curation":[138],"metabolite":[140],"reaction":[142],"discrepancies,":[143],"application":[152],"high-quality":[154]},"counts_by_year":[{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":9},{"year":2017,"cited_by_count":8},{"year":2016,"cited_by_count":12},{"year":2015,"cited_by_count":9},{"year":2014,"cited_by_count":6},{"year":2013,"cited_by_count":4}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
