{"id":"https://openalex.org/W2111870385","doi":"https://doi.org/10.1093/bib/bbs055","title":"Tools for the functional interpretation of metabolomic experiments","display_name":"Tools for the functional interpretation of metabolomic experiments","publication_year":2012,"publication_date":"2012-10-14","ids":{"openalex":"https://openalex.org/W2111870385","doi":"https://doi.org/10.1093/bib/bbs055","mag":"2111870385","pmid":"https://pubmed.ncbi.nlm.nih.gov/23063930"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbs055","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbs055","pdf_url":"https://academic.oup.com/bib/article-pdf/14/6/737/470530/bbs055.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/14/6/737/470530/bbs055.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5030602787","display_name":"M\u00f3nica Chagoyen","orcid":"https://orcid.org/0000-0001-6911-1591"},"institutions":[{"id":"https://openalex.org/I4210104776","display_name":"Centro Nacional de Biotecnolog\u00eda","ror":"https://ror.org/015w4v032","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210104776"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"M. Chagoyen","raw_affiliation_strings":["National Center for Biotechnology (CNB-CSIC), Darwin 3. 28049 Madrid, Spain. pazos@cnb.csic.es"],"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology (CNB-CSIC), Darwin 3. 28049 Madrid, Spain. pazos@cnb.csic.es","institution_ids":["https://openalex.org/I4210104776"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5062274087","display_name":"Florencio Pazos","orcid":"https://orcid.org/0000-0002-2646-6226"},"institutions":[{"id":"https://openalex.org/I4210104776","display_name":"Centro Nacional de Biotecnolog\u00eda","ror":"https://ror.org/015w4v032","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210104776"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"F. Pazos","raw_affiliation_strings":["Computational Systems Biology Group, National Center for Biotechnology (CNB-CSIC), Darwin 3. 28049 Madrid, Spain"],"affiliations":[{"raw_affiliation_string":"Computational Systems Biology Group, National Center for Biotechnology (CNB-CSIC), Darwin 3. 28049 Madrid, Spain","institution_ids":["https://openalex.org/I4210104776"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5062274087"],"corresponding_institution_ids":["https://openalex.org/I4210104776"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":1.7479,"has_fulltext":true,"cited_by_count":68,"citation_normalized_percentile":{"value":0.84370831,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"14","issue":"6","first_page":"737","last_page":"744"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metabolomics","display_name":"Metabolomics","score":0.9044569730758667},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.655889630317688},{"id":"https://openalex.org/keywords/toolbox","display_name":"Toolbox","score":0.6417357325553894},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.508829653263092},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5040282607078552},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.47742021083831787},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.4365043044090271},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.4212058186531067},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.4157494604587555},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.32371824979782104},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.26545944809913635},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.26046478748321533},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.25630664825439453},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1529715657234192},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.05919468402862549}],"concepts":[{"id":"https://openalex.org/C21565614","wikidata":"https://www.wikidata.org/wiki/Q12149006","display_name":"Metabolomics","level":2,"score":0.9044569730758667},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.655889630317688},{"id":"https://openalex.org/C2777655017","wikidata":"https://www.wikidata.org/wiki/Q1501161","display_name":"Toolbox","level":2,"score":0.6417357325553894},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.508829653263092},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5040282607078552},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.47742021083831787},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.4365043044090271},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.4212058186531067},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.4157494604587555},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.32371824979782104},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.26545944809913635},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.26046478748321533},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.25630664825439453},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1529715657234192},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.05919468402862549},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D009682","descriptor_name":"Magnetic Resonance Spectroscopy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009682","descriptor_name":"Magnetic Resonance Spectroscopy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009682","descriptor_name":"Magnetic Resonance Spectroscopy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbs055","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbs055","pdf_url":"https://academic.oup.com/bib/article-pdf/14/6/737/470530/bbs055.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23063930","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23063930","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.939.8843","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.939.8843","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bib.oxfordjournals.org/content/14/6/737.full.pdf","raw_type":"text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbs055","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbs055","pdf_url":"https://academic.oup.com/bib/article-pdf/14/6/737/470530/bbs055.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320338266","display_name":"Centro Nacional de Biotecnolog\u00eda","ror":"https://ror.org/015w4v032"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2111870385.pdf","grobid_xml":"https://content.openalex.org/works/W2111870385.grobid-xml"},"referenced_works_count":53,"referenced_works":["https://openalex.org/W105731480","https://openalex.org/W1946371345","https://openalex.org/W1966981724","https://openalex.org/W1970481425","https://openalex.org/W1970594207","https://openalex.org/W1982185581","https://openalex.org/W1986662234","https://openalex.org/W1997062226","https://openalex.org/W2002405850","https://openalex.org/W2007646009","https://openalex.org/W2010502047","https://openalex.org/W2019240775","https://openalex.org/W2027895157","https://openalex.org/W2033377040","https://openalex.org/W2036282245","https://openalex.org/W2041502250","https://openalex.org/W2051366884","https://openalex.org/W2062090250","https://openalex.org/W2065021234","https://openalex.org/W2071136343","https://openalex.org/W2072378785","https://openalex.org/W2081412654","https://openalex.org/W2085571416","https://openalex.org/W2090347317","https://openalex.org/W2096486669","https://openalex.org/W2099774431","https://openalex.org/W2103017472","https://openalex.org/W2113601822","https://openalex.org/W2118306023","https://openalex.org/W2123106337","https://openalex.org/W2125318012","https://openalex.org/W2130147841","https://openalex.org/W2130410032","https://openalex.org/W2131347449","https://openalex.org/W2132485204","https://openalex.org/W2133465414","https://openalex.org/W2133826923","https://openalex.org/W2134926220","https://openalex.org/W2135435176","https://openalex.org/W2137271300","https://openalex.org/W2145265944","https://openalex.org/W2147714160","https://openalex.org/W2147831097","https://openalex.org/W2148703031","https://openalex.org/W2155158051","https://openalex.org/W2159675211","https://openalex.org/W2160265768","https://openalex.org/W2163132655","https://openalex.org/W2163575083","https://openalex.org/W2165649953","https://openalex.org/W2165681080","https://openalex.org/W2165944862","https://openalex.org/W2167540852"],"related_works":["https://openalex.org/W2166430819","https://openalex.org/W3000606521","https://openalex.org/W1906231076","https://openalex.org/W3150234497","https://openalex.org/W2994725613","https://openalex.org/W2039940120","https://openalex.org/W2109734607","https://openalex.org/W3003414789","https://openalex.org/W2162319041","https://openalex.org/W2483024785"],"abstract_inverted_index":{"The":[0],"so-called":[1],"'omics'":[2,30],"approaches":[3,93],"used":[4,95],"in":[5,43,67,86,96,125,134],"modern":[6],"biology":[7],"aim":[8],"at":[9,18],"massively":[10],"characterizing":[11,56],"the":[12,25,29,36,39,78,126,129,135],"molecular":[13],"repertories":[14],"of":[15,24,38,41,59,128],"living":[16],"systems":[17],"different":[19],"levels.":[20],"Metabolomics":[21],"is":[22],"one":[23],"last":[26],"additions":[27],"to":[28,69],"family":[31],"and":[32,54,98,114],"it":[33],"deals":[34],"with":[35,108],"characterization":[37],"set":[40],"metabolites":[42],"a":[44],"given":[45],"biological":[46,72],"system.":[47],"As":[48],"metabolomic":[49,132],"techniques":[50],"become":[51],"more":[52],"massive":[53],"allow":[55],"larger":[57],"sets":[58,66],"metabolites,":[60],"automatic":[61],"methods":[62],"for":[63,83,111,119,122],"analyzing":[64],"these":[65],"order":[68],"obtain":[70],"meaningful":[71],"information":[73],"are":[74,90],"required.":[75],"Only":[76],"recently":[77],"first":[79],"tools":[80,110],"specifically":[81,117],"designed":[82,118],"this":[84],"task":[85],"metabolomics":[87,120],"appeared.":[88],"They":[89],"based":[91],"on":[92],"previously":[94],"transcriptomics":[97],"other":[99],"'omics',":[100],"such":[101],"as":[102],"annotation":[103],"enrichment":[104],"analysis.":[105],"These,":[106],"together":[107],"generic":[109],"metabolic":[112],"analysis":[113],"visualization":[115],"not":[116],"will":[121],"sure":[123],"be":[124],"toolbox":[127],"researches":[130],"doing":[131],"experiments":[133],"near":[136],"future.":[137]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":7},{"year":2017,"cited_by_count":7},{"year":2016,"cited_by_count":14},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":7},{"year":2013,"cited_by_count":3}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
