{"id":"https://openalex.org/W2144550002","doi":"https://doi.org/10.1093/bib/bbs039","title":"Current opportunities and challenges in microbial metagenome analysis--a bioinformatic perspective","display_name":"Current opportunities and challenges in microbial metagenome analysis--a bioinformatic perspective","publication_year":2012,"publication_date":"2012-09-09","ids":{"openalex":"https://openalex.org/W2144550002","doi":"https://doi.org/10.1093/bib/bbs039","mag":"2144550002","pmid":"https://pubmed.ncbi.nlm.nih.gov/22966151"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbs039","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbs039","pdf_url":"https://academic.oup.com/bib/article-pdf/13/6/728/481476/bbs039.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/13/6/728/481476/bbs039.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5026855883","display_name":"Hanno Teeling","orcid":"https://orcid.org/0000-0003-1889-7859"},"institutions":[{"id":"https://openalex.org/I4210103014","display_name":"Max Planck Institute for Marine Microbiology","ror":"https://ror.org/02385fa51","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210103014"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"H. Teeling","raw_affiliation_strings":["Max Planck Institute for Marine Microbiology, Bremen, Germany"],"affiliations":[{"raw_affiliation_string":"Max Planck Institute for Marine Microbiology, Bremen, Germany","institution_ids":["https://openalex.org/I4210103014"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5091470163","display_name":"Frank Oliver Gl\u00f6ckner","orcid":"https://orcid.org/0000-0001-8528-9023"},"institutions":[{"id":"https://openalex.org/I149899117","display_name":"Max Planck Society","ror":"https://ror.org/01hhn8329","country_code":"DE","type":"funder","lineage":["https://openalex.org/I149899117"]},{"id":"https://openalex.org/I4210103014","display_name":"Max Planck Institute for Marine Microbiology","ror":"https://ror.org/02385fa51","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210103014"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"F. O. Glockner","raw_affiliation_strings":["Microbial Genomics Group, Department of Molecular Ecology, Max Planck Institute for Marine Microbiology, Max Planck Society"],"affiliations":[{"raw_affiliation_string":"Microbial Genomics Group, Department of Molecular Ecology, Max Planck Institute for Marine Microbiology, Max Planck Society","institution_ids":["https://openalex.org/I4210103014","https://openalex.org/I149899117"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5026855883"],"corresponding_institution_ids":["https://openalex.org/I4210103014"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":19.7861,"has_fulltext":true,"cited_by_count":224,"citation_normalized_percentile":{"value":0.99642559,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"13","issue":"6","first_page":"728","last_page":"742"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.9523706436157227},{"id":"https://openalex.org/keywords/perspective","display_name":"Perspective (graphical)","score":0.5545262694358826},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5364181995391846},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5180342793464661},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.49291372299194336},{"id":"https://openalex.org/keywords/biodiversity","display_name":"Biodiversity","score":0.45280033349990845},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.417010635137558},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.336111843585968},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3238376975059509},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09550046920776367},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.08444830775260925},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.06690111756324768}],"concepts":[{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.9523706436157227},{"id":"https://openalex.org/C12713177","wikidata":"https://www.wikidata.org/wiki/Q1900281","display_name":"Perspective (graphical)","level":2,"score":0.5545262694358826},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5364181995391846},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5180342793464661},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.49291372299194336},{"id":"https://openalex.org/C130217890","wikidata":"https://www.wikidata.org/wiki/Q47041","display_name":"Biodiversity","level":2,"score":0.45280033349990845},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.417010635137558},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.336111843585968},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3238376975059509},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09550046920776367},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.08444830775260925},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.06690111756324768},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020745","descriptor_name":"Genome, Archaeal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020745","descriptor_name":"Genome, Archaeal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020745","descriptor_name":"Genome, Archaeal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020745","descriptor_name":"Genome, Archaeal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D044822","descriptor_name":"Biodiversity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D044822","descriptor_name":"Biodiversity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D044822","descriptor_name":"Biodiversity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D044822","descriptor_name":"Biodiversity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bib/bbs039","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbs039","pdf_url":"https://academic.oup.com/bib/article-pdf/13/6/728/481476/bbs039.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22966151","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22966151","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pure.mpg.de:item_2484611","is_oa":true,"landing_page_url":"https://hdl.handle.net/21.11116/0000-0001-C79A-1","pdf_url":"https://hdl.handle.net/21.11116/0000-0006-F7DE-A","source":{"id":"https://openalex.org/S4306400654","display_name":"MPG.PuRe (Max Planck Society)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I149899117","host_organization_name":"Max Planck Society","host_organization_lineage":["https://openalex.org/I149899117"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Briefings in Bioinformatics","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:escidoc.org:escidoc:2484611","is_oa":false,"landing_page_url":"http://hdl.handle.net/21.11116/0000-0001-C79A-1","pdf_url":null,"source":{"id":"https://openalex.org/S7407052962","display_name":"Max Planck Digital Library","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:europepmc.org:2501830","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3504927","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbs039","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbs039","pdf_url":"https://academic.oup.com/bib/article-pdf/13/6/728/481476/bbs039.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land","score":0.6700000166893005}],"awards":[{"id":"https://openalex.org/G2078995544","display_name":null,"funder_award_id":"Biodiversity","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G352791218","display_name":null,"funder_award_id":"(BMBF)","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2144550002.pdf","grobid_xml":"https://content.openalex.org/works/W2144550002.grobid-xml"},"referenced_works_count":149,"referenced_works":["https://openalex.org/W180513472","https://openalex.org/W1511782473","https://openalex.org/W1514613807","https://openalex.org/W1525521077","https://openalex.org/W1539550196","https://openalex.org/W1589513205","https://openalex.org/W1922909364","https://openalex.org/W1966952999","https://openalex.org/W1969018883","https://openalex.org/W1969295076","https://openalex.org/W1969346416","https://openalex.org/W1969542238","https://openalex.org/W1969715921","https://openalex.org/W1970684977","https://openalex.org/W1976855715","https://openalex.org/W1977800104","https://openalex.org/W1979006961","https://openalex.org/W1982888743","https://openalex.org/W1985283768","https://openalex.org/W1989348205","https://openalex.org/W1991056282","https://openalex.org/W1991357951","https://openalex.org/W1992715872","https://openalex.org/W1992840351","https://openalex.org/W1995117714","https://openalex.org/W1997673861","https://openalex.org/W2004652640","https://openalex.org/W2006941904","https://openalex.org/W2007153665","https://openalex.org/W2007447692","https://openalex.org/W2018686814","https://openalex.org/W2020302957","https://openalex.org/W2022269454","https://openalex.org/W2023829651","https://openalex.org/W2029437806","https://openalex.org/W2031207772","https://openalex.org/W2033705779","https://openalex.org/W2033971632","https://openalex.org/W2039752257","https://openalex.org/W2040547956","https://openalex.org/W2040704692","https://openalex.org/W2042893247","https://openalex.org/W2047927409","https://openalex.org/W2050169817","https://openalex.org/W2050322157","https://openalex.org/W2053703914","https://openalex.org/W2053801811","https://openalex.org/W2054239827","https://openalex.org/W2054720302","https://openalex.org/W2055043387","https://openalex.org/W2055503200","https://openalex.org/W2058982051","https://openalex.org/W2069689025","https://openalex.org/W2072812562","https://openalex.org/W2075716829","https://openalex.org/W2077191430","https://openalex.org/W2078447778","https://openalex.org/W2079048673","https://openalex.org/W2081676964","https://openalex.org/W2082521980","https://openalex.org/W2084092121","https://openalex.org/W2085249999","https://openalex.org/W2085987071","https://openalex.org/W2086025298","https://openalex.org/W2087242711","https://openalex.org/W2087671769","https://openalex.org/W2089047063","https://openalex.org/W2090237271","https://openalex.org/W2091232725","https://openalex.org/W2091693057","https://openalex.org/W2091922579","https://openalex.org/W2093239605","https://openalex.org/W2094684607","https://openalex.org/W2095200684","https://openalex.org/W2099006507","https://openalex.org/W2099991744","https://openalex.org/W2100450322","https://openalex.org/W2100742794","https://openalex.org/W2101181144","https://openalex.org/W2103461849","https://openalex.org/W2106104287","https://openalex.org/W2107247090","https://openalex.org/W2109848222","https://openalex.org/W2110982705","https://openalex.org/W2113129488","https://openalex.org/W2113206173","https://openalex.org/W2113915152","https://openalex.org/W2114347076","https://openalex.org/W2115026474","https://openalex.org/W2116895571","https://openalex.org/W2120365168","https://openalex.org/W2121984048","https://openalex.org/W2124817677","https://openalex.org/W2125609193","https://openalex.org/W2127391962","https://openalex.org/W2128301652","https://openalex.org/W2129448726","https://openalex.org/W2129687578","https://openalex.org/W2129861764","https://openalex.org/W2131186249","https://openalex.org/W2131988453","https://openalex.org/W2137896807","https://openalex.org/W2139156166","https://openalex.org/W2140059069","https://openalex.org/W2140175819","https://openalex.org/W2140320695","https://openalex.org/W2140604849","https://openalex.org/W2141461779","https://openalex.org/W2141885858","https://openalex.org/W2142619120","https://openalex.org/W2143777131","https://openalex.org/W2144944670","https://openalex.org/W2145044321","https://openalex.org/W2148474327","https://openalex.org/W2149202898","https://openalex.org/W2149429041","https://openalex.org/W2150337627","https://openalex.org/W2150484441","https://openalex.org/W2150914285","https://openalex.org/W2151186216","https://openalex.org/W2151671981","https://openalex.org/W2152770371","https://openalex.org/W2153138305","https://openalex.org/W2153990926","https://openalex.org/W2154139219","https://openalex.org/W2154375983","https://openalex.org/W2155545841","https://openalex.org/W2156296225","https://openalex.org/W2156701707","https://openalex.org/W2156995746","https://openalex.org/W2159788862","https://openalex.org/W2160072419","https://openalex.org/W2161257366","https://openalex.org/W2161618076","https://openalex.org/W2162210683","https://openalex.org/W2162704968","https://openalex.org/W2163352587","https://openalex.org/W2164327068","https://openalex.org/W2166278306","https://openalex.org/W2170089054","https://openalex.org/W2171309014","https://openalex.org/W4211049762","https://openalex.org/W4211258437","https://openalex.org/W4214952473","https://openalex.org/W4234736813","https://openalex.org/W4235333019","https://openalex.org/W4236236547","https://openalex.org/W4300835539","https://openalex.org/W4320301318"],"related_works":["https://openalex.org/W2899084033","https://openalex.org/W638577851","https://openalex.org/W2968354375","https://openalex.org/W2359440920","https://openalex.org/W2889550857","https://openalex.org/W3013372948","https://openalex.org/W3135997498","https://openalex.org/W4242417330","https://openalex.org/W4388282505","https://openalex.org/W3198631238"],"abstract_inverted_index":{"Metagenomics":[0],"has":[1,49],"become":[2],"an":[3],"indispensable":[4],"tool":[5],"for":[6,28,123],"studying":[7,34],"the":[8,67],"diversity":[9],"and":[10,33,59,106,115,126],"metabolic":[11],"potential":[12,68],"of":[13,45,75,108],"environmental":[14,76],"microbes,":[15],"whose":[16],"bulk":[17],"is":[18],"as":[19,119],"yet":[20],"non-cultivable.":[21],"Continual":[22],"progress":[23],"in":[24,91],"next-generation":[25],"sequencing":[26],"allows":[27],"generating":[29],"increasingly":[30],"large":[31],"metagenomes":[32,36],"multiple":[35],"over":[37],"time":[38],"or":[39],"space.":[40],"Recently,":[41],"a":[42,79,112,120],"new":[43,80],"type":[44],"holistic":[46],"ecosystem":[47],"study":[48],"emerged":[50],"that":[51],"seeks":[52],"to":[53,69,78,87,95,102],"combine":[54],"metagenomics":[55,110],"with":[56,93],"biodiversity,":[57],"meta-expression":[58],"contextual":[60],"data.":[61],"Such":[62],"'ecosystems":[63],"biology'":[64],"approaches":[65],"bear":[66],"not":[70],"only":[71],"advance":[72],"our":[73],"understanding":[74],"microbes":[77],"level":[81],"but":[82],"also":[83],"impose":[84],"challenges":[85,107],"due":[86],"increasing":[88],"data":[89],"complexities,":[90],"particular":[92],"respect":[94],"bioinformatic":[96],"post-processing.":[97],"This":[98],"mini":[99],"review":[100],"aims":[101],"address":[103],"selected":[104],"opportunities":[105],"modern":[109],"from":[111],"bioinformatics":[113],"perspective":[114],"hopefully":[116],"will":[117],"serve":[118],"useful":[121],"resource":[122],"microbial":[124],"ecologists":[125],"bioinformaticians":[127],"alike.":[128]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":11},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":12},{"year":2022,"cited_by_count":19},{"year":2021,"cited_by_count":16},{"year":2020,"cited_by_count":12},{"year":2019,"cited_by_count":18},{"year":2018,"cited_by_count":29},{"year":2017,"cited_by_count":15},{"year":2016,"cited_by_count":17},{"year":2015,"cited_by_count":28},{"year":2014,"cited_by_count":23},{"year":2013,"cited_by_count":16}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
