{"id":"https://openalex.org/W2132522861","doi":"https://doi.org/10.1093/bib/bbs038","title":"The UCSC genome browser and associated tools","display_name":"The UCSC genome browser and associated tools","publication_year":2012,"publication_date":"2012-08-20","ids":{"openalex":"https://openalex.org/W2132522861","doi":"https://doi.org/10.1093/bib/bbs038","mag":"2132522861","pmid":"https://pubmed.ncbi.nlm.nih.gov/22908213"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbs038","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbs038","pdf_url":"https://academic.oup.com/bib/article-pdf/14/2/144/547922/bbs038.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/14/2/144/547922/bbs038.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5072909873","display_name":"Robert M. Kuhn","orcid":"https://orcid.org/0000-0001-8103-7793"},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"R. M. Kuhn","raw_affiliation_strings":["Center for Biomolecular Science and Engineering, University of California, Santa Cruz, 1156 High Street, Santa Cruz, CA 95064, USA. kuhn@soe.ucsc.edu","Center for Biomolecular Science & Engineering, University of California, Santa Cruz, 1156 High Street, Santa Cruz, CA 95064, USA"],"affiliations":[{"raw_affiliation_string":"Center for Biomolecular Science and Engineering, University of California, Santa Cruz, 1156 High Street, Santa Cruz, CA 95064, USA. kuhn@soe.ucsc.edu","institution_ids":["https://openalex.org/I185103710"]},{"raw_affiliation_string":"Center for Biomolecular Science & Engineering, University of California, Santa Cruz, 1156 High Street, Santa Cruz, CA 95064, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083310324","display_name":"D. Haussler","orcid":null},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]},{"id":"https://openalex.org/I1344073410","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90","country_code":"US","type":"facility","lineage":["https://openalex.org/I1344073410"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"D. Haussler","raw_affiliation_strings":["Center for Biomolecular Science and Engineering, University of California, Santa Cruz, 1156 High Street, Santa Cruz, CA 95064, USA,","University of California, Santa","Howard Hughes Medical Institute and Distinguished Professor of Biomolecular Engineering at the University of California, Santa Cruz"],"affiliations":[{"raw_affiliation_string":"Center for Biomolecular Science and Engineering, University of California, Santa Cruz, 1156 High Street, Santa Cruz, CA 95064, USA,","institution_ids":["https://openalex.org/I185103710"]},{"raw_affiliation_string":"University of California, Santa","institution_ids":[]},{"raw_affiliation_string":"Howard Hughes Medical Institute and Distinguished Professor of Biomolecular Engineering at the University of California, Santa Cruz","institution_ids":["https://openalex.org/I1344073410","https://openalex.org/I185103710"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5006195366","display_name":"W. James Kent","orcid":"https://orcid.org/0000-0002-2564-9303"},"institutions":[{"id":"https://openalex.org/I1344073410","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90","country_code":"US","type":"facility","lineage":["https://openalex.org/I1344073410"]},{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"W. J. Kent","raw_affiliation_strings":["Howard Hughes Medical Institute and Distinguished Professor of Biomolecular Engineering at the University of California, Santa Cruz","University of California, Santa","Center for Biomolecular Science and Engineering, University of California, Santa Cruz, 1156 High Street, Santa Cruz, CA 95064, USA,"],"affiliations":[{"raw_affiliation_string":"Howard Hughes Medical Institute and Distinguished Professor of Biomolecular Engineering at the University of California, Santa Cruz","institution_ids":["https://openalex.org/I1344073410","https://openalex.org/I185103710"]},{"raw_affiliation_string":"University of California, Santa","institution_ids":[]},{"raw_affiliation_string":"Center for Biomolecular Science and Engineering, University of California, Santa Cruz, 1156 High Street, Santa Cruz, CA 95064, USA,","institution_ids":["https://openalex.org/I185103710"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5072909873"],"corresponding_institution_ids":["https://openalex.org/I185103710"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":14.7903,"has_fulltext":true,"cited_by_count":1012,"citation_normalized_percentile":{"value":0.99430657,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"14","issue":"2","first_page":"144","last_page":"161"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9943000078201294,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9868000149726868,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome-browser","display_name":"Genome browser","score":0.9523267149925232},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6469241380691528},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.49730899930000305},{"id":"https://openalex.org/keywords/reference-genome","display_name":"Reference genome","score":0.48585960268974304},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.4567706286907196},{"id":"https://openalex.org/keywords/encode","display_name":"ENCODE","score":0.4399607181549072},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.40028682351112366},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3400300443172455},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3049851059913635},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.21994903683662415},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.16851577162742615},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.10934770107269287}],"concepts":[{"id":"https://openalex.org/C2781148417","wikidata":"https://www.wikidata.org/wiki/Q5533486","display_name":"Genome browser","level":5,"score":0.9523267149925232},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6469241380691528},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.49730899930000305},{"id":"https://openalex.org/C192953774","wikidata":"https://www.wikidata.org/wiki/Q7307127","display_name":"Reference genome","level":4,"score":0.48585960268974304},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.4567706286907196},{"id":"https://openalex.org/C66746571","wikidata":"https://www.wikidata.org/wiki/Q1134833","display_name":"ENCODE","level":3,"score":0.4399607181549072},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.40028682351112366},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3400300443172455},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3049851059913635},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.21994903683662415},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.16851577162742615},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.10934770107269287}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003626","descriptor_name":"Data Display","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003626","descriptor_name":"Data Display","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003626","descriptor_name":"Data Display","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057386","descriptor_name":"Search Engine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057386","descriptor_name":"Search Engine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057386","descriptor_name":"Search Engine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bib/bbs038","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbs038","pdf_url":"https://academic.oup.com/bib/article-pdf/14/2/144/547922/bbs038.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22908213","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22908213","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.817.571","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.817.571","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/2a/86/bbs038.PMC3603215.pdf","raw_type":"text"},{"id":"pmh:oai:europepmc.org:2601050","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3603215","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbs038","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbs038","pdf_url":"https://academic.oup.com/bib/article-pdf/14/2/144/547922/bbs038.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5,"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2132522861.pdf","grobid_xml":"https://content.openalex.org/works/W2132522861.grobid-xml"},"referenced_works_count":51,"referenced_works":["https://openalex.org/W1560200430","https://openalex.org/W1829137581","https://openalex.org/W1921457844","https://openalex.org/W1971646616","https://openalex.org/W2021341670","https://openalex.org/W2029833898","https://openalex.org/W2036841261","https://openalex.org/W2037500862","https://openalex.org/W2045040686","https://openalex.org/W2047253404","https://openalex.org/W2070510621","https://openalex.org/W2071501400","https://openalex.org/W2072393958","https://openalex.org/W2084160423","https://openalex.org/W2085755265","https://openalex.org/W2088442470","https://openalex.org/W2097771645","https://openalex.org/W2102304447","https://openalex.org/W2104570606","https://openalex.org/W2106650442","https://openalex.org/W2108234281","https://openalex.org/W2112132489","https://openalex.org/W2116753165","https://openalex.org/W2120550813","https://openalex.org/W2122598328","https://openalex.org/W2122732537","https://openalex.org/W2127640118","https://openalex.org/W2128016314","https://openalex.org/W2129785061","https://openalex.org/W2136145671","https://openalex.org/W2136514583","https://openalex.org/W2145186656","https://openalex.org/W2145191876","https://openalex.org/W2145477956","https://openalex.org/W2149992227","https://openalex.org/W2151253278","https://openalex.org/W2152320398","https://openalex.org/W2156443053","https://openalex.org/W2158272128","https://openalex.org/W2158714788","https://openalex.org/W2164683872","https://openalex.org/W2167827709","https://openalex.org/W2247766769","https://openalex.org/W2772934464","https://openalex.org/W2916083703","https://openalex.org/W2916408032","https://openalex.org/W2918025614","https://openalex.org/W4210347168","https://openalex.org/W4210450218","https://openalex.org/W4211208250","https://openalex.org/W4230606671"],"related_works":["https://openalex.org/W2158272128","https://openalex.org/W2160379721","https://openalex.org/W2009935171","https://openalex.org/W2144311691","https://openalex.org/W2146734921","https://openalex.org/W2057568687","https://openalex.org/W2088343901","https://openalex.org/W2989829966","https://openalex.org/W4361984506","https://openalex.org/W2171622167"],"abstract_inverted_index":{"The":[0,55,100,146,163],"UCSC":[1,144],"Genome":[2,24,196],"Browser":[3,46,101,148],"(http://genome.ucsc.edu)":[4],"is":[5,112,149],"a":[6,93,150,207],"graphical":[7,152],"viewer":[8],"for":[9,42,114,181,205,230],"genomic":[10,33,53],"data":[11,34,65,72,85,121,141,161,201,219,237],"now":[12],"in":[13,129,142],"its":[14],"13th":[15],"year.":[16],"Since":[17],"the":[18,22,45,74,136,143,176,179,194,215,218,222],"early":[19],"days":[20],"of":[21,32,35,49,60,139,160,178,185,248],"Human":[23],"Project,":[25],"it":[26],"has":[27],"presented":[28],"an":[29,97],"integrated":[30],"view":[31],"many":[36,61,104,130],"kinds.":[37],"Now":[38],"home":[39],"to":[40,52,57,96,169,234],"assemblies":[41],"58":[43],"organisms,":[44],"presents":[47],"visualization":[48,247],"annotations":[50,59],"mapped":[51],"coordinates.":[54],"ability":[56],"juxtapose":[58],"types":[62],"facilitates":[63],"inquiry-driven":[64],"mining.":[66],"Gene":[67],"predictions,":[68],"mRNA":[69],"alignments,":[70],"epigenomic":[71],"from":[73,79,92,116,251],"ENCODE":[75],"project,":[76],"conservation":[77],"scores":[78],"vertebrate":[80],"whole-genome":[81],"alignments":[82,115],"and":[83,126,158,171,193,221,243,253],"variation":[84],"may":[86,132,225],"be":[87,133,226],"viewed":[88],"at":[89],"any":[90],"scale":[91],"single":[94],"base":[95],"entire":[98],"chromosome.":[99],"also":[102],"includes":[103],"other":[105],"widely":[106],"used":[107],"tools,":[108],"including":[109],"BLAT,":[110],"which":[111,154],"useful":[113,204],"high-throughput":[117,231],"sequencing":[118,209,232],"experiments.":[119],"Private":[120],"uploaded":[122],"as":[123,240],"Custom":[124],"Tracks":[125],"Data":[127],"Hubs":[128],"formats":[131,202],"displayed":[134,227],"alongside":[135],"rich":[137],"compendium":[138],"precomputed":[140],"database.":[145],"Table":[147],"full-featured":[151],"interface,":[153],"allows":[155,167],"querying,":[156],"filtering":[157],"intersection":[159],"tables.":[162],"Saved":[164],"Session":[165],"feature":[166],"users":[168],"store":[170],"share":[172],"customized":[173],"views,":[174],"enhancing":[175],"utility":[177],"system":[180],"organizing":[182],"multiple":[183],"trains":[184],"thought.":[186],"Binary":[187],"Alignment/Map":[188],"(BAM),":[189],"Variant":[190],"Call":[191],"Format":[192],"Personal":[195],"Single":[197],"Nucleotide":[198],"Polymorphisms":[199],"(SNPs)":[200],"are":[203],"visualizing":[206],"large":[208,249],"experiment":[210],"(whole-genome":[211],"or":[212],"whole-exome),":[213],"where":[214],"differences":[216],"between":[217],"set":[220],"reference":[223],"assembly":[224],"graphically.":[228],"Support":[229],"extends":[233],"compact,":[235],"indexed":[236],"formats,":[238],"such":[239],"BAM,":[241],"bigBed":[242],"bigWig,":[244],"allowing":[245],"rapid":[246],"datasets":[250],"RNA-seq":[252],"ChIP-seq":[254],"experiments":[255],"via":[256],"local":[257],"hosting.":[258]},"counts_by_year":[{"year":2026,"cited_by_count":26},{"year":2025,"cited_by_count":86},{"year":2024,"cited_by_count":135},{"year":2023,"cited_by_count":124},{"year":2022,"cited_by_count":118},{"year":2021,"cited_by_count":135},{"year":2020,"cited_by_count":103},{"year":2019,"cited_by_count":56},{"year":2018,"cited_by_count":52},{"year":2017,"cited_by_count":34},{"year":2016,"cited_by_count":33},{"year":2015,"cited_by_count":34},{"year":2014,"cited_by_count":42},{"year":2013,"cited_by_count":33},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
