{"id":"https://openalex.org/W2146367740","doi":"https://doi.org/10.1093/bib/bbs030","title":"Bioinformatics tools and challenges in structural analysis of lipidomics MS/MS data","display_name":"Bioinformatics tools and challenges in structural analysis of lipidomics MS/MS data","publication_year":2012,"publication_date":"2012-07-03","ids":{"openalex":"https://openalex.org/W2146367740","doi":"https://doi.org/10.1093/bib/bbs030","mag":"2146367740","pmid":"https://pubmed.ncbi.nlm.nih.gov/22764120"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbs030","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbs030","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5062436502","display_name":"J\u00fcrgen Hartler","orcid":"https://orcid.org/0000-0002-1095-6458"},"institutions":[{"id":"https://openalex.org/I4210138243","display_name":"Austrian Centre of Industrial Biotechnology (Austria)","ror":"https://ror.org/03dm7dd93","country_code":"AT","type":"company","lineage":["https://openalex.org/I4210138243"]}],"countries":["AT"],"is_corresponding":true,"raw_author_name":"J. Hartler","raw_affiliation_strings":["Austrian Centre of Industrial Biotechnology"],"affiliations":[{"raw_affiliation_string":"Austrian Centre of Industrial Biotechnology","institution_ids":["https://openalex.org/I4210138243"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007577603","display_name":"Ravi Tharakan","orcid":"https://orcid.org/0000-0001-5895-9271"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"R. Tharakan","raw_affiliation_strings":["Johns Hopkins University ("],"affiliations":[{"raw_affiliation_string":"Johns Hopkins University (","institution_ids":["https://openalex.org/I145311948"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006868869","display_name":"Harald K\u00f6feler","orcid":"https://orcid.org/0000-0002-2725-9616"},"institutions":[{"id":"https://openalex.org/I202276237","display_name":"Medical University of Graz","ror":"https://ror.org/02n0bts35","country_code":"AT","type":"education","lineage":["https://openalex.org/I202276237"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"H. C. Kofeler","raw_affiliation_strings":["Medical University of Graz#TAB#"],"affiliations":[{"raw_affiliation_string":"Medical University of Graz#TAB#","institution_ids":["https://openalex.org/I202276237"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062512746","display_name":"David R. Graham","orcid":"https://orcid.org/0000-0001-5454-4108"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"D. R. Graham","raw_affiliation_strings":["The Johns Hopkins University ,"],"affiliations":[{"raw_affiliation_string":"The Johns Hopkins University ,","institution_ids":["https://openalex.org/I145311948"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5037209090","display_name":"Gerhard Thallinger","orcid":"https://orcid.org/0000-0002-2864-5404"},"institutions":[{"id":"https://openalex.org/I4092182","display_name":"Graz University of Technology","ror":"https://ror.org/00d7xrm67","country_code":"AT","type":"education","lineage":["https://openalex.org/I4092182"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"G. G. Thallinger","raw_affiliation_strings":[", Graz University of Technology#TAB#"],"affiliations":[{"raw_affiliation_string":", Graz University of Technology#TAB#","institution_ids":["https://openalex.org/I4092182"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5062436502"],"corresponding_institution_ids":["https://openalex.org/I4210138243"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":1.8423,"has_fulltext":false,"cited_by_count":35,"citation_normalized_percentile":{"value":0.85392639,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"14","issue":"3","first_page":"375","last_page":"390"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.9948999881744385,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/lipidomics","display_name":"Lipidomics","score":0.9630802273750305},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6329481601715088},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.619645893573761},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.43417078256607056},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4265606999397278},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.2960057854652405},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2585941553115845},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.1614387035369873}],"concepts":[{"id":"https://openalex.org/C58017582","wikidata":"https://www.wikidata.org/wiki/Q6556376","display_name":"Lipidomics","level":2,"score":0.9630802273750305},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6329481601715088},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.619645893573761},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.43417078256607056},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4265606999397278},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.2960057854652405},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2585941553115845},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.1614387035369873},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D008055","descriptor_name":"Lipids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008055","descriptor_name":"Lipids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008055","descriptor_name":"Lipids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D015394","descriptor_name":"Molecular Structure","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015394","descriptor_name":"Molecular Structure","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015394","descriptor_name":"Molecular Structure","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053719","descriptor_name":"Tandem Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053719","descriptor_name":"Tandem Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053719","descriptor_name":"Tandem Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057166","descriptor_name":"High-Throughput Screening Assays","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057166","descriptor_name":"High-Throughput Screening Assays","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057166","descriptor_name":"High-Throughput Screening Assays","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbs030","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbs030","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22764120","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22764120","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320323638","display_name":"Austrian Centre of Industrial Biotechnology","ror":"https://ror.org/03dm7dd93"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":124,"referenced_works":["https://openalex.org/W1495926848","https://openalex.org/W1501377354","https://openalex.org/W1525575010","https://openalex.org/W1596177457","https://openalex.org/W1942869306","https://openalex.org/W1963591962","https://openalex.org/W1964297987","https://openalex.org/W1965526389","https://openalex.org/W1966820675","https://openalex.org/W1968217976","https://openalex.org/W1974005322","https://openalex.org/W1974551552","https://openalex.org/W1975614909","https://openalex.org/W1975783279","https://openalex.org/W1977253117","https://openalex.org/W1977938546","https://openalex.org/W1980303483","https://openalex.org/W1981593008","https://openalex.org/W1982555544","https://openalex.org/W1986448105","https://openalex.org/W1988359982","https://openalex.org/W1989299822","https://openalex.org/W1989378845","https://openalex.org/W1992209802","https://openalex.org/W1992656196","https://openalex.org/W1995543670","https://openalex.org/W1996272702","https://openalex.org/W1997319916","https://openalex.org/W1997718624","https://openalex.org/W1998413819","https://openalex.org/W1999397561","https://openalex.org/W2002579997","https://openalex.org/W2004574784","https://openalex.org/W2006221512","https://openalex.org/W2008753359","https://openalex.org/W2009296195","https://openalex.org/W2013581823","https://openalex.org/W2016572177","https://openalex.org/W2017109633","https://openalex.org/W2017875034","https://openalex.org/W2018265125","https://openalex.org/W2022851188","https://openalex.org/W2025849267","https://openalex.org/W2026843880","https://openalex.org/W2028421938","https://openalex.org/W2031942563","https://openalex.org/W2036204652","https://openalex.org/W2037612812","https://openalex.org/W2037881903","https://openalex.org/W2038165631","https://openalex.org/W2038951041","https://openalex.org/W2041235251","https://openalex.org/W2043453309","https://openalex.org/W2043775257","https://openalex.org/W2044075316","https://openalex.org/W2047275456","https://openalex.org/W2053385401","https://openalex.org/W2053769484","https://openalex.org/W2054580845","https://openalex.org/W2055167993","https://openalex.org/W2057869480","https://openalex.org/W2058319261","https://openalex.org/W2058676960","https://openalex.org/W2059327215","https://openalex.org/W2059544508","https://openalex.org/W2060584742","https://openalex.org/W2062302472","https://openalex.org/W2063430141","https://openalex.org/W2064032283","https://openalex.org/W2069737921","https://openalex.org/W2070958222","https://openalex.org/W2074859966","https://openalex.org/W2077639939","https://openalex.org/W2078394205","https://openalex.org/W2079213310","https://openalex.org/W2079325827","https://openalex.org/W2081380820","https://openalex.org/W2081934181","https://openalex.org/W2084375915","https://openalex.org/W2085809830","https://openalex.org/W2086365248","https://openalex.org/W2087431894","https://openalex.org/W2088602153","https://openalex.org/W2096769282","https://openalex.org/W2103366684","https://openalex.org/W2104174436","https://openalex.org/W2105359840","https://openalex.org/W2112530229","https://openalex.org/W2113945996","https://openalex.org/W2116687544","https://openalex.org/W2120191364","https://openalex.org/W2122326381","https://openalex.org/W2123709251","https://openalex.org/W2125091322","https://openalex.org/W2127031535","https://openalex.org/W2128335879","https://openalex.org/W2130466489","https://openalex.org/W2130706354","https://openalex.org/W2134334295","https://openalex.org/W2141476336","https://openalex.org/W2143481724","https://openalex.org/W2144054945","https://openalex.org/W2147621341","https://openalex.org/W2149329792","https://openalex.org/W2150635383","https://openalex.org/W2151156336","https://openalex.org/W2151346683","https://openalex.org/W2153178365","https://openalex.org/W2157240187","https://openalex.org/W2157388299","https://openalex.org/W2158138282","https://openalex.org/W2161210686","https://openalex.org/W2161918069","https://openalex.org/W2165009222","https://openalex.org/W2165681080","https://openalex.org/W2167326901","https://openalex.org/W2167569642","https://openalex.org/W2210441773","https://openalex.org/W2335725835","https://openalex.org/W2416426346","https://openalex.org/W2497786620","https://openalex.org/W3143103570","https://openalex.org/W3192085238","https://openalex.org/W4256475235"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2017497567","https://openalex.org/W2804498896","https://openalex.org/W2908070307","https://openalex.org/W2091512523","https://openalex.org/W2117748922","https://openalex.org/W4238045650","https://openalex.org/W2004558801","https://openalex.org/W2806559730","https://openalex.org/W2088324202"],"abstract_inverted_index":{"Lipidomics,":[0],"the":[1,5,99],"systematic":[2],"study":[3],"of":[4,8,33,43,71],"lipid":[6,51,72],"composition":[7],"a":[9,28,123],"cell":[10],"or":[11],"tissue,":[12],"is":[13],"an":[14,57],"invaluable":[15],"complement":[16],"to":[17,30,67,88,108],"knowledge":[18],"gained":[19],"by":[20,80],"genomics":[21],"and":[22,37,49,59,74,97,105],"proteomics":[23],"research.":[24],"Mass":[25],"spectrometry":[26],"provides":[27],"means":[29],"detect":[31],"hundreds":[32],"lipids":[34],"in":[35,115],"parallel,":[36],"this":[38],"includes":[39],"low":[40],"abundance":[41],"species":[42,52],"lipids.":[44],"Nevertheless,":[45],"frequently":[46],"occurring":[47],"isobaric":[48],"isomeric":[50],"complicate":[53],"lipidomics":[54],"analyses":[55],"from":[56,103,122],"analytical":[58],"bioinformatics":[60,82,93,124],"perspective.":[61,125],"Various":[62],"MS/MS":[63,94,110],"strategies":[64,76],"have":[65,77],"evolved":[66],"resolve":[68],"ambiguous":[69],"identifications":[70],"species,":[73],"these":[75],"been":[78],"supported":[79],"corresponding":[81],"analysis":[83,95],"tools.":[84],"This":[85],"review":[86],"intends":[87],"familiarize":[89],"readers":[90],"with":[91],"available":[92],"tools":[96],"databases,":[98],"structural":[100],"information":[101],"obtainable":[102],"these,":[104],"their":[106],"applicability":[107],"different":[109],"strategies.":[111],"Finally,":[112],"future":[113],"challenges":[114],"detecting":[116],"double":[117],"bond":[118],"positions":[119],"are":[120],"investigated":[121]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":5},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":3}],"updated_date":"2026-03-01T08:55:55.761014","created_date":"2025-10-10T00:00:00"}
