{"id":"https://openalex.org/W2141708465","doi":"https://doi.org/10.1093/bib/bbs026","title":"Reverse engineering biomolecular systems using -omic data: challenges, progress and opportunities","display_name":"Reverse engineering biomolecular systems using -omic data: challenges, progress and opportunities","publication_year":2012,"publication_date":"2012-07-01","ids":{"openalex":"https://openalex.org/W2141708465","doi":"https://doi.org/10.1093/bib/bbs026","mag":"2141708465","pmid":"https://pubmed.ncbi.nlm.nih.gov/22833495"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbs026","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbs026","pdf_url":"https://academic.oup.com/bib/article-pdf/13/4/430/443353/bbs026.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/13/4/430/443353/bbs026.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5112223489","display_name":"Chang F. Quo","orcid":null},"institutions":[{"id":"https://openalex.org/I130701444","display_name":"Georgia Institute of Technology","ror":"https://ror.org/01zkghx44","country_code":"US","type":"education","lineage":["https://openalex.org/I130701444"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"C. F. Quo","raw_affiliation_strings":["Georgia Institute of Technology, Atlanta, GA 30332, USA","Georgia Institute of Technology, Atlanta, GA 30332 USA,"],"affiliations":[{"raw_affiliation_string":"Georgia Institute of Technology, Atlanta, GA 30332, USA","institution_ids":["https://openalex.org/I130701444"]},{"raw_affiliation_string":"Georgia Institute of Technology, Atlanta, GA 30332 USA,","institution_ids":["https://openalex.org/I130701444"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047079234","display_name":"Chanchala Kaddi","orcid":null},"institutions":[{"id":"https://openalex.org/I130701444","display_name":"Georgia Institute of Technology","ror":"https://ror.org/01zkghx44","country_code":"US","type":"education","lineage":["https://openalex.org/I130701444"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"C. Kaddi","raw_affiliation_strings":["[Georgia Institute of Technology.]"],"affiliations":[{"raw_affiliation_string":"[Georgia Institute of Technology.]","institution_ids":["https://openalex.org/I130701444"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074230084","display_name":"John H. Phan","orcid":"https://orcid.org/0000-0002-4670-2660"},"institutions":[{"id":"https://openalex.org/I150468666","display_name":"Emory University","ror":"https://ror.org/03czfpz43","country_code":"US","type":"education","lineage":["https://openalex.org/I150468666"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"J. H. Phan","raw_affiliation_strings":["Emory University"],"affiliations":[{"raw_affiliation_string":"Emory University","institution_ids":["https://openalex.org/I150468666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040086890","display_name":"Amin Zollanvari","orcid":"https://orcid.org/0000-0002-9172-8413"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"A. Zollanvari","raw_affiliation_strings":["Department of Electrical and Computer Engineering"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100413849","display_name":"Min Xu","orcid":"https://orcid.org/0000-0001-9581-8849"},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"M. Xu","raw_affiliation_strings":["Shanghai Jiao Tong Univ"],"affiliations":[{"raw_affiliation_string":"Shanghai Jiao Tong Univ","institution_ids":["https://openalex.org/I183067930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030096887","display_name":"May D. Wang","orcid":"https://orcid.org/0000-0003-3961-3608"},"institutions":[{"id":"https://openalex.org/I130701444","display_name":"Georgia Institute of Technology","ror":"https://ror.org/01zkghx44","country_code":"US","type":"education","lineage":["https://openalex.org/I130701444"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"M. D. Wang","raw_affiliation_strings":["[Georgia Institute of Technology.]"],"affiliations":[{"raw_affiliation_string":"[Georgia Institute of Technology.]","institution_ids":["https://openalex.org/I130701444"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5076921758","display_name":"Gil Alterovitz","orcid":"https://orcid.org/0000-0002-0495-7059"},"institutions":[{"id":"https://openalex.org/I2801851002","display_name":"Harvard University Press","ror":"https://ror.org/006v7bf86","country_code":"US","type":"other","lineage":["https://openalex.org/I136199984","https://openalex.org/I2801851002"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"G. Alterovitz","raw_affiliation_strings":["Harvard University"],"affiliations":[{"raw_affiliation_string":"Harvard University","institution_ids":["https://openalex.org/I2801851002"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5112223489"],"corresponding_institution_ids":["https://openalex.org/I130701444"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":1.0757,"has_fulltext":false,"cited_by_count":21,"citation_normalized_percentile":{"value":0.76607335,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"13","issue":"4","first_page":"430","last_page":"445"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11663","display_name":"Viral Infectious Diseases and Gene Expression in Insects","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.7532297372817993},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6931965351104736},{"id":"https://openalex.org/keywords/reverse-engineering","display_name":"Reverse engineering","score":0.677200973033905},{"id":"https://openalex.org/keywords/synthetic-biology","display_name":"Synthetic biology","score":0.6635820865631104},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5880188941955566},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.574101448059082},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.5153172016143799},{"id":"https://openalex.org/keywords/systems-modeling","display_name":"Systems modeling","score":0.41414570808410645},{"id":"https://openalex.org/keywords/systems-engineering","display_name":"Systems engineering","score":0.3716908097267151},{"id":"https://openalex.org/keywords/biochemical-engineering","display_name":"Biochemical engineering","score":0.326736181974411},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.24044090509414673},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.20250141620635986},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.14387983083724976},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1013190746307373},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.09972190856933594}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.7532297372817993},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6931965351104736},{"id":"https://openalex.org/C207850805","wikidata":"https://www.wikidata.org/wiki/Q269608","display_name":"Reverse engineering","level":2,"score":0.677200973033905},{"id":"https://openalex.org/C191908910","wikidata":"https://www.wikidata.org/wiki/Q862838","display_name":"Synthetic biology","level":2,"score":0.6635820865631104},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5880188941955566},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.574101448059082},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.5153172016143799},{"id":"https://openalex.org/C110963975","wikidata":"https://www.wikidata.org/wiki/Q12070446","display_name":"Systems modeling","level":2,"score":0.41414570808410645},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.3716908097267151},{"id":"https://openalex.org/C183696295","wikidata":"https://www.wikidata.org/wiki/Q2487696","display_name":"Biochemical engineering","level":1,"score":0.326736181974411},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.24044090509414673},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.20250141620635986},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.14387983083724976},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1013190746307373},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.09972190856933594},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001709","descriptor_name":"Biotechnology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001709","descriptor_name":"Biotechnology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001709","descriptor_name":"Biotechnology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057005","descriptor_name":"Bioengineering","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057005","descriptor_name":"Bioengineering","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057005","descriptor_name":"Bioengineering","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/bib/bbs026","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbs026","pdf_url":"https://academic.oup.com/bib/article-pdf/13/4/430/443353/bbs026.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22833495","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22833495","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.844.8219","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.844.8219","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bib.oxfordjournals.org/content/13/4/430.full.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.855.8341","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.855.8341","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://projects.iq.harvard.edu/files/bcl/files/quo-briefings_in_bioinformatics-2012.pdf","raw_type":"text"},{"id":"pmh:oai:europepmc.org:2691466","is_oa":false,"landing_page_url":"http://europepmc.org/articles/PMC3404400","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:3404400","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3404400","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbs026","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbs026","pdf_url":"https://academic.oup.com/bib/article-pdf/13/4/430/443353/bbs026.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4699999988079071,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2141708465.pdf","grobid_xml":"https://content.openalex.org/works/W2141708465.grobid-xml"},"referenced_works_count":168,"referenced_works":["https://openalex.org/W11458205","https://openalex.org/W89551800","https://openalex.org/W165850321","https://openalex.org/W1502529406","https://openalex.org/W1527571715","https://openalex.org/W1544923801","https://openalex.org/W1557194500","https://openalex.org/W1581582023","https://openalex.org/W1606784130","https://openalex.org/W1614514575","https://openalex.org/W1637936532","https://openalex.org/W1826153834","https://openalex.org/W1900713713","https://openalex.org/W1965843937","https://openalex.org/W1966428433","https://openalex.org/W1968530152","https://openalex.org/W1970156673","https://openalex.org/W1970221707","https://openalex.org/W1970707037","https://openalex.org/W1971224531","https://openalex.org/W1974681473","https://openalex.org/W1977199071","https://openalex.org/W1978034558","https://openalex.org/W1978486653","https://openalex.org/W1979229300","https://openalex.org/W1979572288","https://openalex.org/W1980301976","https://openalex.org/W1983070417","https://openalex.org/W1983730038","https://openalex.org/W1984224006","https://openalex.org/W1984248485","https://openalex.org/W1984776370","https://openalex.org/W1985855930","https://openalex.org/W1986040959","https://openalex.org/W2001758733","https://openalex.org/W2006559366","https://openalex.org/W2011430131","https://openalex.org/W2013275477","https://openalex.org/W2020561965","https://openalex.org/W2021560851","https://openalex.org/W2022224521","https://openalex.org/W2025183726","https://openalex.org/W2026791237","https://openalex.org/W2027576577","https://openalex.org/W2028343312","https://openalex.org/W2028709282","https://openalex.org/W2029370898","https://openalex.org/W2030986396","https://openalex.org/W2032247293","https://openalex.org/W2034400748","https://openalex.org/W2036535051","https://openalex.org/W2041830656","https://openalex.org/W2042443829","https://openalex.org/W2043235003","https://openalex.org/W2044525257","https://openalex.org/W2045637886","https://openalex.org/W2045916345","https://openalex.org/W2047360542","https://openalex.org/W2047480488","https://openalex.org/W2047928920","https://openalex.org/W2048000994","https://openalex.org/W2048624832","https://openalex.org/W2049446938","https://openalex.org/W2050328564","https://openalex.org/W2050554833","https://openalex.org/W2054390271","https://openalex.org/W2054499597","https://openalex.org/W2057279785","https://openalex.org/W2057328179","https://openalex.org/W2057888153","https://openalex.org/W2062245653","https://openalex.org/W2064793996","https://openalex.org/W2066116650","https://openalex.org/W2067301975","https://openalex.org/W2069495483","https://openalex.org/W2070102480","https://openalex.org/W2072372077","https://openalex.org/W2075944631","https://openalex.org/W2077854212","https://openalex.org/W2078149659","https://openalex.org/W2078370799","https://openalex.org/W2082694470","https://openalex.org/W2082993613","https://openalex.org/W2091947792","https://openalex.org/W2093931624","https://openalex.org/W2094052071","https://openalex.org/W2095319945","https://openalex.org/W2097035595","https://openalex.org/W2097065948","https://openalex.org/W2099090468","https://openalex.org/W2100448568","https://openalex.org/W2100668965","https://openalex.org/W2100714130","https://openalex.org/W2101506009","https://openalex.org/W2102787760","https://openalex.org/W2103762254","https://openalex.org/W2105883975","https://openalex.org/W2106693434","https://openalex.org/W2107564978","https://openalex.org/W2107956883","https://openalex.org/W2109826612","https://openalex.org/W2110265246","https://openalex.org/W2110298216","https://openalex.org/W2110690451","https://openalex.org/W2111165959","https://openalex.org/W2112466127","https://openalex.org/W2112523116","https://openalex.org/W2112794562","https://openalex.org/W2112888168","https://openalex.org/W2113777491","https://openalex.org/W2113778023","https://openalex.org/W2114482012","https://openalex.org/W2117056464","https://openalex.org/W2119387367","https://openalex.org/W2119443883","https://openalex.org/W2119732456","https://openalex.org/W2121574075","https://openalex.org/W2122270655","https://openalex.org/W2122789575","https://openalex.org/W2123696077","https://openalex.org/W2124201592","https://openalex.org/W2124236793","https://openalex.org/W2126419817","https://openalex.org/W2126592495","https://openalex.org/W2127704515","https://openalex.org/W2130912501","https://openalex.org/W2131251072","https://openalex.org/W2131591423","https://openalex.org/W2133254839","https://openalex.org/W2134800568","https://openalex.org/W2135699773","https://openalex.org/W2136145671","https://openalex.org/W2136498480","https://openalex.org/W2137120416","https://openalex.org/W2137600761","https://openalex.org/W2139703939","https://openalex.org/W2140008396","https://openalex.org/W2141007997","https://openalex.org/W2142072523","https://openalex.org/W2144779133","https://openalex.org/W2144885342","https://openalex.org/W2147516046","https://openalex.org/W2148611629","https://openalex.org/W2148924797","https://openalex.org/W2149378314","https://openalex.org/W2150036465","https://openalex.org/W2150926065","https://openalex.org/W2152227081","https://openalex.org/W2160533336","https://openalex.org/W2160795956","https://openalex.org/W2161511352","https://openalex.org/W2161922735","https://openalex.org/W2162103775","https://openalex.org/W2162142896","https://openalex.org/W2163965551","https://openalex.org/W2164631357","https://openalex.org/W2168914100","https://openalex.org/W2170726615","https://openalex.org/W2171083320","https://openalex.org/W2171404743","https://openalex.org/W2309277749","https://openalex.org/W2323658858","https://openalex.org/W2440645080","https://openalex.org/W2611370172","https://openalex.org/W2753765968","https://openalex.org/W2964646613","https://openalex.org/W3099289621","https://openalex.org/W3103786587"],"related_works":["https://openalex.org/W2057769265","https://openalex.org/W2338895903","https://openalex.org/W2024161258","https://openalex.org/W1911418903","https://openalex.org/W3044523069","https://openalex.org/W2136248167","https://openalex.org/W2126646394","https://openalex.org/W2211443823","https://openalex.org/W1987445442","https://openalex.org/W4211049090"],"abstract_inverted_index":{"Recent":[0],"advances":[1],"in":[2,13,69,88,136,177],"high-throughput":[3],"biotechnologies":[4],"have":[5],"led":[6],"to":[7,28,49,61,66,99,108,119,126,153,170],"the":[8,131,142,172],"rapid":[9],"growing":[10,91],"research":[11],"interest":[12],"reverse":[14,70,94,178],"engineering":[15,71,95,179],"of":[16,34,93,145,186],"biomolecular":[17,96,180],"systems":[18,44,73,115,181,189],"(REBMS).":[19],"'Data-driven'":[20],"approaches,":[21,42],"i.e.":[22,43,164],"data":[23,36,63,103,105,187],"mining,":[24,106,188],"can":[25,46],"be":[26,47,77],"used":[27,48],"extract":[29],"patterns":[30],"from":[31],"large":[32],"volumes":[33],"biochemical":[35,102],"at":[37],"molecular-level":[38],"resolution":[39],"while":[40],"'design-driven'":[41],"modeling,":[45],"simulate":[50],"emergent":[51],"system":[52,121,158],"properties.":[53],"Consequently,":[54],"both":[55],"data-":[56],"and":[57,111,117,133,155,174,191],"design-driven":[58],"approaches":[59,113],"applied":[60],"-omic":[62],"may":[64],"lead":[65],"novel":[67],"insights":[68],"biological":[72],"that":[74],"could":[75],"not":[76],"expected":[78],"before":[79],"using":[80,183],"low-throughput":[81],"platforms.":[82],"However,":[83],"there":[84],"exist":[85],"several":[86],"challenges":[87,176],"this":[89],"fast":[90],"field":[92,144],"systems:":[97],"(i)":[98],"integrate":[100],"heterogeneous":[101],"for":[104,114],"(ii)":[107],"combine":[109],"top-down":[110],"bottom-up":[112],"modeling":[116,190],"(iii)":[118],"validate":[120,154],"models":[122,159],"experimentally.":[123],"In":[124],"addition":[125],"reviewing":[127],"progress":[128],"made":[129],"by":[130],"community":[132],"opportunities":[134],"encountered":[135],"addressing":[137],"these":[138],"challenges,":[139],"we":[140],"explore":[141],"emerging":[143],"synthetic":[146,192],"biology,":[147],"which":[148],"is":[149,169],"an":[150],"exciting":[151],"approach":[152],"analyze":[156],"theoretical":[157],"directly":[160],"through":[161],"experimental":[162],"synthesis,":[163],"analysis-by-synthesis.":[165],"The":[166],"ultimate":[167],"goal":[168],"address":[171],"present":[173],"future":[175],"(REBMS)":[182],"integrated":[184],"workflow":[185],"biology.":[193]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2019,"cited_by_count":3},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":2},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":3}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
