{"id":"https://openalex.org/W2030390110","doi":"https://doi.org/10.1093/bib/bbs018","title":"Mining the pharmacogenomics literature--a survey of the state of the art","display_name":"Mining the pharmacogenomics literature--a survey of the state of the art","publication_year":2012,"publication_date":"2012-07-01","ids":{"openalex":"https://openalex.org/W2030390110","doi":"https://doi.org/10.1093/bib/bbs018","mag":"2030390110","pmid":"https://pubmed.ncbi.nlm.nih.gov/22833496"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbs018","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbs018","pdf_url":"https://academic.oup.com/bib/article-pdf/13/4/460/442533/bbs018.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bib/article-pdf/13/4/460/442533/bbs018.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5083400955","display_name":"Ulrike Hahn","orcid":"https://orcid.org/0000-0002-7744-8589"},"institutions":[{"id":"https://openalex.org/I76198965","display_name":"Friedrich Schiller University Jena","ror":"https://ror.org/05qpz1x62","country_code":"DE","type":"education","lineage":["https://openalex.org/I76198965"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"U. Hahn","raw_affiliation_strings":["Jena University Language and Information Engineering (JULIE) Lab, Friedrich-Schiller-Universit\u00e4t Jena, Jena, Germany. udo.hahn@uni-jena.de"],"affiliations":[{"raw_affiliation_string":"Jena University Language and Information Engineering (JULIE) Lab, Friedrich-Schiller-Universit\u00e4t Jena, Jena, Germany. udo.hahn@uni-jena.de","institution_ids":["https://openalex.org/I76198965"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054773374","display_name":"K. B. Cohen","orcid":null},"institutions":[{"id":"https://openalex.org/I76198965","display_name":"Friedrich Schiller University Jena","ror":"https://ror.org/05qpz1x62","country_code":"DE","type":"education","lineage":["https://openalex.org/I76198965"]},{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]},{"id":"https://openalex.org/I259800356","display_name":"Sir Sayajirao General Hospital Medical College","ror":"https://ror.org/00j8xcs04","country_code":"IN","type":"education","lineage":["https://openalex.org/I259800356"]},{"id":"https://openalex.org/I4210137306","display_name":"Stanford Medicine","ror":"https://ror.org/03mtd9a03","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210137306","https://openalex.org/I97018004"]},{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["DE","IN","US"],"is_corresponding":false,"raw_author_name":"K. B. Cohen","raw_affiliation_strings":["Program at the University of Colorado School of Medicine","Stanford Medical School","Baroda Medical College, India,","Computational Linguistics and Language Technology at Friedrich-Schiller-Universita \u00a8t Jena, Germany,","PhD from Penn State University, USA,","(Biomedical Informatics) at the Stanford School of Medicine","University Language and Information Engineering (JULIE) Lab, Friedrich-Schiller-Universita \u00a8t Jena, Jena, Germany","Biomedical Informatics at Stanford University,"],"affiliations":[{"raw_affiliation_string":"Program at the University of Colorado School of Medicine","institution_ids":[]},{"raw_affiliation_string":"Stanford Medical School","institution_ids":["https://openalex.org/I4210137306"]},{"raw_affiliation_string":"Baroda Medical College, India,","institution_ids":["https://openalex.org/I259800356"]},{"raw_affiliation_string":"Computational Linguistics and Language Technology at Friedrich-Schiller-Universita \u00a8t Jena, Germany,","institution_ids":["https://openalex.org/I76198965"]},{"raw_affiliation_string":"PhD from Penn State University, USA,","institution_ids":["https://openalex.org/I130769515"]},{"raw_affiliation_string":"(Biomedical Informatics) at the Stanford School of Medicine","institution_ids":[]},{"raw_affiliation_string":"University Language and Information Engineering (JULIE) Lab, Friedrich-Schiller-Universita \u00a8t Jena, Jena, Germany","institution_ids":[]},{"raw_affiliation_string":"Biomedical Informatics at Stanford University,","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007767486","display_name":"Yael Garten","orcid":null},"institutions":[{"id":"https://openalex.org/I76198965","display_name":"Friedrich Schiller University Jena","ror":"https://ror.org/05qpz1x62","country_code":"DE","type":"education","lineage":["https://openalex.org/I76198965"]},{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]},{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]},{"id":"https://openalex.org/I4210137306","display_name":"Stanford Medicine","ror":"https://ror.org/03mtd9a03","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210137306","https://openalex.org/I97018004"]},{"id":"https://openalex.org/I259800356","display_name":"Sir Sayajirao General Hospital Medical College","ror":"https://ror.org/00j8xcs04","country_code":"IN","type":"education","lineage":["https://openalex.org/I259800356"]}],"countries":["DE","IN","US"],"is_corresponding":false,"raw_author_name":"Y. Garten","raw_affiliation_strings":["Computational Linguistics and Language Technology at Friedrich-Schiller-Universita \u00a8t Jena, Germany,","Program at the University of Colorado School of Medicine","(Biomedical Informatics) at the Stanford School of Medicine","University Language and Information Engineering (JULIE) Lab, Friedrich-Schiller-Universita \u00a8t Jena, Jena, Germany","Biomedical Informatics at Stanford University,","PhD from Penn State University, USA,","Stanford Medical School","Baroda Medical College, India,"],"affiliations":[{"raw_affiliation_string":"Computational Linguistics and Language Technology at Friedrich-Schiller-Universita \u00a8t Jena, Germany,","institution_ids":["https://openalex.org/I76198965"]},{"raw_affiliation_string":"Program at the University of Colorado School of Medicine","institution_ids":[]},{"raw_affiliation_string":"(Biomedical Informatics) at the Stanford School of Medicine","institution_ids":[]},{"raw_affiliation_string":"University Language and Information Engineering (JULIE) Lab, Friedrich-Schiller-Universita \u00a8t Jena, Jena, Germany","institution_ids":[]},{"raw_affiliation_string":"Biomedical Informatics at Stanford University,","institution_ids":["https://openalex.org/I97018004"]},{"raw_affiliation_string":"PhD from Penn State University, USA,","institution_ids":["https://openalex.org/I130769515"]},{"raw_affiliation_string":"Stanford Medical School","institution_ids":["https://openalex.org/I4210137306"]},{"raw_affiliation_string":"Baroda Medical College, India,","institution_ids":["https://openalex.org/I259800356"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5041175834","display_name":"Nigam H. Shah","orcid":"https://orcid.org/0000-0001-9385-7158"},"institutions":[{"id":"https://openalex.org/I76198965","display_name":"Friedrich Schiller University Jena","ror":"https://ror.org/05qpz1x62","country_code":"DE","type":"education","lineage":["https://openalex.org/I76198965"]},{"id":"https://openalex.org/I259800356","display_name":"Sir Sayajirao General Hospital Medical College","ror":"https://ror.org/00j8xcs04","country_code":"IN","type":"education","lineage":["https://openalex.org/I259800356"]},{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]},{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]},{"id":"https://openalex.org/I4210137306","display_name":"Stanford Medicine","ror":"https://ror.org/03mtd9a03","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210137306","https://openalex.org/I97018004"]}],"countries":["DE","IN","US"],"is_corresponding":false,"raw_author_name":"N. H. Shah","raw_affiliation_strings":["Program at the University of Colorado School of Medicine","(Biomedical Informatics) at the Stanford School of Medicine","Baroda Medical College, India,","Stanford Medical School","Computational Linguistics and Language Technology at Friedrich-Schiller-Universita \u00a8t Jena, Germany,","Biomedical Informatics at Stanford University,","PhD from Penn State University, USA,","University Language and Information Engineering (JULIE) Lab, Friedrich-Schiller-Universita \u00a8t Jena, Jena, Germany"],"affiliations":[{"raw_affiliation_string":"Program at the University of Colorado School of Medicine","institution_ids":[]},{"raw_affiliation_string":"(Biomedical Informatics) at the Stanford School of Medicine","institution_ids":[]},{"raw_affiliation_string":"Baroda Medical College, India,","institution_ids":["https://openalex.org/I259800356"]},{"raw_affiliation_string":"Stanford Medical School","institution_ids":["https://openalex.org/I4210137306"]},{"raw_affiliation_string":"Computational Linguistics and Language Technology at Friedrich-Schiller-Universita \u00a8t Jena, Germany,","institution_ids":["https://openalex.org/I76198965"]},{"raw_affiliation_string":"Biomedical Informatics at Stanford University,","institution_ids":["https://openalex.org/I97018004"]},{"raw_affiliation_string":"PhD from Penn State University, USA,","institution_ids":["https://openalex.org/I130769515"]},{"raw_affiliation_string":"University Language and Information Engineering (JULIE) Lab, Friedrich-Schiller-Universita \u00a8t Jena, Jena, Germany","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5083400955"],"corresponding_institution_ids":["https://openalex.org/I76198965"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":3.0927,"has_fulltext":true,"cited_by_count":51,"citation_normalized_percentile":{"value":0.92101247,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"13","issue":"4","first_page":"460","last_page":"494"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9882000088691711,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13083","display_name":"Advanced Text Analysis Techniques","score":0.9753999710083008,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pharmacogenomics","display_name":"Pharmacogenomics","score":0.7647732496261597},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.6518486738204956},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6118628978729248},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.6025225520133972},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.5055155754089355},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.4804653525352478},{"id":"https://openalex.org/keywords/analytics","display_name":"Analytics","score":0.4538300633430481},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.389958918094635},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.32535308599472046},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.2507480978965759}],"concepts":[{"id":"https://openalex.org/C170734499","wikidata":"https://www.wikidata.org/wiki/Q1152227","display_name":"Pharmacogenomics","level":2,"score":0.7647732496261597},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.6518486738204956},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6118628978729248},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.6025225520133972},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.5055155754089355},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.4804653525352478},{"id":"https://openalex.org/C79158427","wikidata":"https://www.wikidata.org/wiki/Q485396","display_name":"Analytics","level":2,"score":0.4538300633430481},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.389958918094635},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.32535308599472046},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.2507480978965759},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003625","descriptor_name":"Data Collection","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003625","descriptor_name":"Data Collection","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003625","descriptor_name":"Data Collection","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003625","descriptor_name":"Data Collection","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010597","descriptor_name":"Pharmacogenetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010597","descriptor_name":"Pharmacogenetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010597","descriptor_name":"Pharmacogenetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010597","descriptor_name":"Pharmacogenetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bib/bbs018","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbs018","pdf_url":"https://academic.oup.com/bib/article-pdf/13/4/460/442533/bbs018.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22833496","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22833496","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:2691465","is_oa":false,"landing_page_url":"http://europepmc.org/articles/PMC3404399","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:3404399","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3404399","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbs018","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbs018","pdf_url":"https://academic.oup.com/bib/article-pdf/13/4/460/442533/bbs018.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6200000047683716,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G2221938931","display_name":null,"funder_award_id":"GM61374","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2553168204","display_name":null,"funder_award_id":"LM008111","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G352791218","display_name":null,"funder_award_id":"(BMBF)","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G4152391376","display_name":null,"funder_award_id":"U54-HG004028","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5976505316","display_name":null,"funder_award_id":"LM009254","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6336628147","display_name":null,"funder_award_id":"00002","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8571625394","display_name":null,"funder_award_id":"0315581","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"}],"funders":[{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2030390110.pdf","grobid_xml":"https://content.openalex.org/works/W2030390110.grobid-xml"},"referenced_works_count":208,"referenced_works":["https://openalex.org/W22087513","https://openalex.org/W25546754","https://openalex.org/W37638913","https://openalex.org/W39864132","https://openalex.org/W42742550","https://openalex.org/W55543732","https://openalex.org/W61219374","https://openalex.org/W76749362","https://openalex.org/W77347155","https://openalex.org/W78632571","https://openalex.org/W94599463","https://openalex.org/W97427318","https://openalex.org/W102787101","https://openalex.org/W103980920","https://openalex.org/W110534077","https://openalex.org/W127517693","https://openalex.org/W139057381","https://openalex.org/W158623955","https://openalex.org/W165790511","https://openalex.org/W172260869","https://openalex.org/W173861811","https://openalex.org/W228431503","https://openalex.org/W242378563","https://openalex.org/W1480287196","https://openalex.org/W1498579665","https://openalex.org/W1504212872","https://openalex.org/W1505806382","https://openalex.org/W1507447159","https://openalex.org/W1516041857","https://openalex.org/W1527557040","https://openalex.org/W1540315694","https://openalex.org/W1561585380","https://openalex.org/W1584308190","https://openalex.org/W1600005654","https://openalex.org/W1608124137","https://openalex.org/W1845214076","https://openalex.org/W1870686808","https://openalex.org/W1878217576","https://openalex.org/W1883744688","https://openalex.org/W1934602670","https://openalex.org/W1954715867","https://openalex.org/W1966519033","https://openalex.org/W1972694920","https://openalex.org/W1973797881","https://openalex.org/W1980127292","https://openalex.org/W1981492645","https://openalex.org/W1982464493","https://openalex.org/W1987979808","https://openalex.org/W1991476714","https://openalex.org/W1991567209","https://openalex.org/W1995580819","https://openalex.org/W1995687988","https://openalex.org/W1997680883","https://openalex.org/W1999965082","https://openalex.org/W2001829063","https://openalex.org/W2002474413","https://openalex.org/W2002514548","https://openalex.org/W2005058680","https://openalex.org/W2005958938","https://openalex.org/W2007908885","https://openalex.org/W2012639032","https://openalex.org/W2013192790","https://openalex.org/W2015620729","https://openalex.org/W2015954361","https://openalex.org/W2017098353","https://openalex.org/W2019543926","https://openalex.org/W2023736097","https://openalex.org/W2031185328","https://openalex.org/W2032566933","https://openalex.org/W2033853342","https://openalex.org/W2036935277","https://openalex.org/W2037035119","https://openalex.org/W2040610660","https://openalex.org/W2042711932","https://openalex.org/W2043335066","https://openalex.org/W2044420612","https://openalex.org/W2044453906","https://openalex.org/W2045016337","https://openalex.org/W2046747418","https://openalex.org/W2048503857","https://openalex.org/W2049240985","https://openalex.org/W2051689038","https://openalex.org/W2053673723","https://openalex.org/W2054558802","https://openalex.org/W2054868414","https://openalex.org/W2055032581","https://openalex.org/W2056616115","https://openalex.org/W2061716729","https://openalex.org/W2061848042","https://openalex.org/W2068737686","https://openalex.org/W2074122739","https://openalex.org/W2075322787","https://openalex.org/W2075472325","https://openalex.org/W2075655036","https://openalex.org/W2075897300","https://openalex.org/W2077566950","https://openalex.org/W2080007652","https://openalex.org/W2080948989","https://openalex.org/W2085860988","https://openalex.org/W2086817924","https://openalex.org/W2094591616","https://openalex.org/W2095596879","https://openalex.org/W2095752327","https://openalex.org/W2096252540","https://openalex.org/W2096718637","https://openalex.org/W2096797897","https://openalex.org/W2096814387","https://openalex.org/W2098738258","https://openalex.org/W2099188065","https://openalex.org/W2100751507","https://openalex.org/W2101013878","https://openalex.org/W2101727078","https://openalex.org/W2101819947","https://openalex.org/W2102672399","https://openalex.org/W2102777243","https://openalex.org/W2103308144","https://openalex.org/W2103427999","https://openalex.org/W2104070133","https://openalex.org/W2104088534","https://openalex.org/W2104381725","https://openalex.org/W2107005506","https://openalex.org/W2109206523","https://openalex.org/W2110279753","https://openalex.org/W2111044246","https://openalex.org/W2112946624","https://openalex.org/W2114039834","https://openalex.org/W2114388055","https://openalex.org/W2114668172","https://openalex.org/W2114702301","https://openalex.org/W2114735889","https://openalex.org/W2116159459","https://openalex.org/W2117770626","https://openalex.org/W2118002992","https://openalex.org/W2118257691","https://openalex.org/W2119646114","https://openalex.org/W2120580278","https://openalex.org/W2120587524","https://openalex.org/W2121244856","https://openalex.org/W2121570534","https://openalex.org/W2121844933","https://openalex.org/W2121920862","https://openalex.org/W2122402213","https://openalex.org/W2123439964","https://openalex.org/W2125552472","https://openalex.org/W2125904022","https://openalex.org/W2126276057","https://openalex.org/W2126344780","https://openalex.org/W2127239015","https://openalex.org/W2128279348","https://openalex.org/W2131285447","https://openalex.org/W2131347449","https://openalex.org/W2132724073","https://openalex.org/W2133018204","https://openalex.org/W2134232193","https://openalex.org/W2134725489","https://openalex.org/W2134769633","https://openalex.org/W2135186741","https://openalex.org/W2135467896","https://openalex.org/W2136615148","https://openalex.org/W2138024326","https://openalex.org/W2138275182","https://openalex.org/W2138482836","https://openalex.org/W2138595422","https://openalex.org/W2141766660","https://openalex.org/W2142572836","https://openalex.org/W2142575968","https://openalex.org/W2143997177","https://openalex.org/W2144631782","https://openalex.org/W2145383760","https://openalex.org/W2145428772","https://openalex.org/W2146089916","https://openalex.org/W2146538435","https://openalex.org/W2148130205","https://openalex.org/W2149184178","https://openalex.org/W2149803936","https://openalex.org/W2152317795","https://openalex.org/W2152398020","https://openalex.org/W2152881983","https://openalex.org/W2153804780","https://openalex.org/W2154654747","https://openalex.org/W2156750171","https://openalex.org/W2156930958","https://openalex.org/W2158656300","https://openalex.org/W2159230276","https://openalex.org/W2159636537","https://openalex.org/W2159985898","https://openalex.org/W2160194473","https://openalex.org/W2162228163","https://openalex.org/W2164474247","https://openalex.org/W2164717195","https://openalex.org/W2165428180","https://openalex.org/W2165671627","https://openalex.org/W2167214840","https://openalex.org/W2167540062","https://openalex.org/W2168041406","https://openalex.org/W2168091548","https://openalex.org/W2169250641","https://openalex.org/W2169818249","https://openalex.org/W2171440685","https://openalex.org/W2171857887","https://openalex.org/W2184865040","https://openalex.org/W2312141939","https://openalex.org/W2322154235","https://openalex.org/W2471491911","https://openalex.org/W2548790574","https://openalex.org/W2568020214","https://openalex.org/W2604664386","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2556874318","https://openalex.org/W1557353121","https://openalex.org/W2370955888","https://openalex.org/W2983922222","https://openalex.org/W145014062","https://openalex.org/W3113316772","https://openalex.org/W2106723893","https://openalex.org/W2142017030","https://openalex.org/W2111562006","https://openalex.org/W1966032531"],"abstract_inverted_index":{"This":[0,59],"article":[1],"surveys":[2],"efforts":[3,62],"on":[4],"text":[5,104,132,169,198,219],"mining":[6,199,220],"of":[7,38,53,68,96,103,158,192,205,217],"the":[8,13,22,36,65,188,206,215],"pharmacogenomics":[9],"literature,":[10],"mainly":[11],"from":[12],"period":[14],"2008":[15],"to":[16,176,183],"2011.":[17],"Pharmacogenomics":[18],"(or":[19],"pharmacogenetics)":[20],"is":[21,106],"field":[23,216],"that":[24,47,209],"studies":[25],"how":[26],"human":[27],"genetic":[28],"variation":[29],"impacts":[30],"drug":[31],"response.":[32],"Therefore,":[33],"publications":[34,111],"span":[35],"intersection":[37],"research":[39,55],"in":[40,56,214],"genotypes,":[41],"phenotypes":[42],"and":[43,76,79,84,120,127,144,149,160,167,172,185,221],"pharmacology,":[44],"a":[45,51],"topic":[46],"has":[48],"increasingly":[49],"become":[50],"focus":[52],"active":[54],"recent":[57],"years.":[58],"survey":[60],"covers":[61],"dealing":[63],"with":[64,138,187],"automatic":[66],"recognition":[67],"relevant":[69,87],"named":[70],"entities":[71],"(e.g.":[72],"genes,":[73],"gene":[74],"variants":[75],"proteins,":[77],"diseases":[78],"other":[80,85],"pathological":[81],"phenomena,":[82],"drugs":[83],"chemicals":[86],"for":[88,130,164,225],"medical":[89],"treatment),":[90],"as":[91,93,109,113,115,178,180],"well":[92,114,179],"various":[94],"forms":[95],"relations":[97],"between":[98],"them.":[99],"A":[100],"wide":[101],"range":[102],"genres":[105],"considered,":[107],"such":[108],"scientific":[110],"(abstracts,":[112],"full":[116],"texts),":[117],"patent":[118],"texts":[119],"clinical":[121],"narratives.":[122],"We":[123],"also":[124],"discuss":[125],"infrastructure":[126],"resources":[128],"needed":[129],"advanced":[131],"analytics,":[133],"e.g.":[134],"document":[135],"corpora":[136],"annotated":[137],"corresponding":[139],"semantic":[140],"metadata":[141],"(gold":[142],"standards":[143],"training":[145],"data),":[146],"biomedical":[147],"terminologies":[148],"ontologies":[150],"providing":[151],"domain-specific":[152],"background":[153],"knowledge":[154,194],"at":[155],"different":[156],"levels":[157],"formality":[159],"specificity,":[161],"software":[162],"architectures":[163],"building":[165],"complex":[166],"scalable":[168],"analytics":[170],"pipelines":[171],"Web":[173],"services":[174],"grounded":[175],"them,":[177],"comprehensive":[181],"ways":[182],"disseminate":[184],"interact":[186],"typically":[189],"huge":[190],"amounts":[191],"semiformal":[193],"structures":[195],"extracted":[196],"by":[197],"tools.":[200],"Finally,":[201],"we":[202],"consider":[203],"some":[204],"novel":[207],"applications":[208],"have":[210],"already":[211],"been":[212],"developed":[213],"pharmacogenomic":[218],"point":[222],"out":[223],"perspectives":[224],"future":[226],"research.":[227]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":6},{"year":2015,"cited_by_count":8},{"year":2014,"cited_by_count":9},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
