{"id":"https://openalex.org/W2101695910","doi":"https://doi.org/10.1093/bib/bbs005","title":"Cancer gene prioritization by integrative analysis of mRNA expression and DNA copy number data: a comparative review","display_name":"Cancer gene prioritization by integrative analysis of mRNA expression and DNA copy number data: a comparative review","publication_year":2012,"publication_date":"2012-03-22","ids":{"openalex":"https://openalex.org/W2101695910","doi":"https://doi.org/10.1093/bib/bbs005","mag":"2101695910","pmid":"https://pubmed.ncbi.nlm.nih.gov/22441573"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbs005","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbs005","pdf_url":"https://academic.oup.com/bib/article-pdf/14/1/27/862856/bbs005.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["arxiv","crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bib/article-pdf/14/1/27/862856/bbs005.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5082648063","display_name":"Leo Lahti","orcid":"https://orcid.org/0000-0001-5537-637X"},"institutions":[{"id":"https://openalex.org/I913481162","display_name":"Wageningen University & Research","ror":"https://ror.org/04qw24q55","country_code":"NL","type":"education","lineage":["https://openalex.org/I913481162"]}],"countries":["NL"],"is_corresponding":true,"raw_author_name":"L. Lahti","raw_affiliation_strings":["Wageningen University, Laboratory of Microbiology, 6703HB Wageningen, Netherlands. leo.lahti@iki.fi","Wageningen University, Laboratory of Microbiology, 6703HB Wageningen, Netherlands"],"affiliations":[{"raw_affiliation_string":"Wageningen University, Laboratory of Microbiology, 6703HB Wageningen, Netherlands. leo.lahti@iki.fi","institution_ids":["https://openalex.org/I913481162"]},{"raw_affiliation_string":"Wageningen University, Laboratory of Microbiology, 6703HB Wageningen, Netherlands","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080129940","display_name":"Martin Sch\u00e4fer","orcid":"https://orcid.org/0000-0001-6487-3634"},"institutions":[{"id":"https://openalex.org/I200332995","display_name":"TU Dortmund University","ror":"https://ror.org/01k97gp34","country_code":"DE","type":"education","lineage":["https://openalex.org/I200332995"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"M. Schafer","raw_affiliation_strings":[") Department of Statistics, TU Dortmund University, Vogelpothsweg 87, 44221 Dortmund, Germany"],"affiliations":[{"raw_affiliation_string":") Department of Statistics, TU Dortmund University, Vogelpothsweg 87, 44221 Dortmund, Germany","institution_ids":["https://openalex.org/I200332995"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050123773","display_name":"Hans\u2010Ulrich Klein","orcid":"https://orcid.org/0000-0002-6382-9428"},"institutions":[{"id":"https://openalex.org/I22465464","display_name":"University of M\u00fcnster","ror":"https://ror.org/00pd74e08","country_code":"DE","type":"education","lineage":["https://openalex.org/I22465464"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"H.-U. Klein","raw_affiliation_strings":[") Institute of Medical Informatics, University of M\u00fcnster, Albert-Schweitzer-Campus 1 -A11, D-48149 M\u00fcnster, Germany"],"affiliations":[{"raw_affiliation_string":") Institute of Medical Informatics, University of M\u00fcnster, Albert-Schweitzer-Campus 1 -A11, D-48149 M\u00fcnster, Germany","institution_ids":["https://openalex.org/I22465464"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062054067","display_name":"Silvio Bicciato","orcid":"https://orcid.org/0000-0002-1944-7078"},"institutions":[{"id":"https://openalex.org/I122346577","display_name":"University of Modena and Reggio Emilia","ror":"https://ror.org/02d4c4y02","country_code":"IT","type":"education","lineage":["https://openalex.org/I122346577"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"S. Bicciato","raw_affiliation_strings":[") Center for Genome Research, University of Modena and Reggio Emilia, via G. Campi, 287 -41100 Modena, Italy"],"affiliations":[{"raw_affiliation_string":") Center for Genome Research, University of Modena and Reggio Emilia, via G. Campi, 287 -41100 Modena, Italy","institution_ids":["https://openalex.org/I122346577"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5002071945","display_name":"Martin Dugas","orcid":"https://orcid.org/0000-0001-9740-0788"},"institutions":[{"id":"https://openalex.org/I22465464","display_name":"University of M\u00fcnster","ror":"https://ror.org/00pd74e08","country_code":"DE","type":"education","lineage":["https://openalex.org/I22465464"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"M. Dugas","raw_affiliation_strings":[") Institute of Medical Informatics, University of M\u00fcnster, Albert-Schweitzer-Campus 1 -A11, D-48149 M\u00fcnster, Germany"],"affiliations":[{"raw_affiliation_string":") Institute of Medical Informatics, University of M\u00fcnster, Albert-Schweitzer-Campus 1 -A11, D-48149 M\u00fcnster, Germany","institution_ids":["https://openalex.org/I22465464"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5082648063"],"corresponding_institution_ids":["https://openalex.org/I913481162"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":4.1408,"has_fulltext":true,"cited_by_count":45,"citation_normalized_percentile":{"value":0.94371921,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"14","issue":"1","first_page":"27","last_page":"35"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/benchmarking","display_name":"Benchmarking","score":0.7897979021072388},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6710909008979797},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.647146463394165},{"id":"https://openalex.org/keywords/prioritization","display_name":"Prioritization","score":0.5609984993934631},{"id":"https://openalex.org/keywords/copy-number-variation","display_name":"Copy-number variation","score":0.5449615120887756},{"id":"https://openalex.org/keywords/gene-expression-profiling","display_name":"Gene expression profiling","score":0.5347937941551208},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4935072660446167},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4918239116668701},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.4682627320289612},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.36413079500198364},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.35134562849998474},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.3099061846733093}],"concepts":[{"id":"https://openalex.org/C86251818","wikidata":"https://www.wikidata.org/wiki/Q816754","display_name":"Benchmarking","level":2,"score":0.7897979021072388},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6710909008979797},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.647146463394165},{"id":"https://openalex.org/C2777615720","wikidata":"https://www.wikidata.org/wiki/Q11888847","display_name":"Prioritization","level":2,"score":0.5609984993934631},{"id":"https://openalex.org/C120821319","wikidata":"https://www.wikidata.org/wiki/Q1501491","display_name":"Copy-number variation","level":4,"score":0.5449615120887756},{"id":"https://openalex.org/C18431079","wikidata":"https://www.wikidata.org/wiki/Q1502169","display_name":"Gene expression profiling","level":4,"score":0.5347937941551208},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4935072660446167},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4918239116668701},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.4682627320289612},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.36413079500198364},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.35134562849998474},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.3099061846733093},{"id":"https://openalex.org/C539667460","wikidata":"https://www.wikidata.org/wiki/Q2414942","display_name":"Management science","level":1,"score":0.0},{"id":"https://openalex.org/C162853370","wikidata":"https://www.wikidata.org/wiki/Q39809","display_name":"Marketing","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004273","descriptor_name":"DNA, Neoplasm","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004273","descriptor_name":"DNA, Neoplasm","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004273","descriptor_name":"DNA, Neoplasm","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009857","descriptor_name":"Oncogenes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009857","descriptor_name":"Oncogenes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009857","descriptor_name":"Oncogenes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000096","qualifier_name":"biosynthesis","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000096","qualifier_name":"biosynthesis","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000096","qualifier_name":"biosynthesis","is_major_topic":false},{"descriptor_ui":"D012334","descriptor_name":"RNA, Neoplasm","qualifier_ui":"Q000096","qualifier_name":"biosynthesis","is_major_topic":false},{"descriptor_ui":"D012334","descriptor_name":"RNA, Neoplasm","qualifier_ui":"Q000096","qualifier_name":"biosynthesis","is_major_topic":false},{"descriptor_ui":"D012334","descriptor_name":"RNA, Neoplasm","qualifier_ui":"Q000096","qualifier_name":"biosynthesis","is_major_topic":false},{"descriptor_ui":"D015972","descriptor_name":"Gene Expression Regulation, Neoplastic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015972","descriptor_name":"Gene Expression Regulation, Neoplastic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015972","descriptor_name":"Gene Expression Regulation, Neoplastic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056915","descriptor_name":"DNA Copy Number Variations","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D056915","descriptor_name":"DNA Copy Number Variations","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D056915","descriptor_name":"DNA Copy Number Variations","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1093/bib/bbs005","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbs005","pdf_url":"https://academic.oup.com/bib/article-pdf/14/1/27/862856/bbs005.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22441573","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22441573","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:arXiv.org:1111.4639","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1111.4639","pdf_url":"https://arxiv.org/pdf/1111.4639","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:europepmc.org:2551968","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3548603","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:iris.unimore.it:11380/738689","is_oa":true,"landing_page_url":"http://hdl.handle.net/11380/738689","pdf_url":null,"source":{"id":"https://openalex.org/S4306400718","display_name":"IRIS UNIMORE (University of Modena and Reggio Emilia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I122346577","host_organization_name":"University of Modena and Reggio Emilia","host_organization_lineage":["https://openalex.org/I122346577"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:www.research.unipd.it:11577/3504399","is_oa":true,"landing_page_url":"https://hdl.handle.net/11577/3504399","pdf_url":null,"source":{"id":"https://openalex.org/S4377196283","display_name":"Research Padua  Archive (University of Padua)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I138689650","host_organization_name":"University of Padua","host_organization_lineage":["https://openalex.org/I138689650"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:wur:oai:library.wur.nl:wurpubs/447972","is_oa":false,"landing_page_url":"https://research.wur.nl/en/publications/cancer-gene-prioritization-by-integrative-analysis-of-mrna-expres","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Briefings in Bioinformatics, 14(1), 27 - 35","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bib/bbs005","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbs005","pdf_url":"https://academic.oup.com/bib/article-pdf/14/1/27/862856/bbs005.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","score":0.41999998688697815,"display_name":"Partnerships for the goals"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2101695910.pdf","grobid_xml":"https://content.openalex.org/works/W2101695910.grobid-xml"},"referenced_works_count":66,"referenced_works":["https://openalex.org/W1501929801","https://openalex.org/W1572073390","https://openalex.org/W1578055439","https://openalex.org/W1696261677","https://openalex.org/W1750544312","https://openalex.org/W1967827763","https://openalex.org/W1968667083","https://openalex.org/W1971374042","https://openalex.org/W1984065010","https://openalex.org/W2008929650","https://openalex.org/W2011047838","https://openalex.org/W2014606320","https://openalex.org/W2015058356","https://openalex.org/W2018075641","https://openalex.org/W2024996887","https://openalex.org/W2025183726","https://openalex.org/W2025983204","https://openalex.org/W2036010272","https://openalex.org/W2037416530","https://openalex.org/W2040329520","https://openalex.org/W2043138882","https://openalex.org/W2048862998","https://openalex.org/W2053339863","https://openalex.org/W2061908600","https://openalex.org/W2076310052","https://openalex.org/W2078370799","https://openalex.org/W2080866509","https://openalex.org/W2098290597","https://openalex.org/W2100438487","https://openalex.org/W2100714130","https://openalex.org/W2101001954","https://openalex.org/W2102140136","https://openalex.org/W2103659026","https://openalex.org/W2105717378","https://openalex.org/W2109555487","https://openalex.org/W2113570388","https://openalex.org/W2117632905","https://openalex.org/W2119967034","https://openalex.org/W2132800834","https://openalex.org/W2133174470","https://openalex.org/W2135185276","https://openalex.org/W2135827569","https://openalex.org/W2136313443","https://openalex.org/W2137518296","https://openalex.org/W2141873373","https://openalex.org/W2143669634","https://openalex.org/W2154361640","https://openalex.org/W2156138784","https://openalex.org/W2157012805","https://openalex.org/W2157582398","https://openalex.org/W2158173091","https://openalex.org/W2160191258","https://openalex.org/W2160604511","https://openalex.org/W2161433585","https://openalex.org/W2165015714","https://openalex.org/W2170866859","https://openalex.org/W2171463869","https://openalex.org/W2172109281","https://openalex.org/W2321242205","https://openalex.org/W2324222396","https://openalex.org/W2328599910","https://openalex.org/W2582743722","https://openalex.org/W2949427672","https://openalex.org/W4242813980","https://openalex.org/W4252676770","https://openalex.org/W4298401040"],"related_works":["https://openalex.org/W4238897586","https://openalex.org/W435179959","https://openalex.org/W2619091065","https://openalex.org/W2059640416","https://openalex.org/W1490753184","https://openalex.org/W2284465472","https://openalex.org/W2291782699","https://openalex.org/W1993948687","https://openalex.org/W2000169967","https://openalex.org/W2112883198"],"abstract_inverted_index":{"A":[0,36],"variety":[1],"of":[2,12,19,55,63],"genome-wide":[3,64],"profiling":[4,70],"techniques":[5],"are":[6,104],"available":[7,105],"to":[8,44,79,89],"investigate":[9],"complementary":[10],"aspects":[11],"genome":[13],"structure":[14],"and":[15,67,83,101],"function.":[16],"Integrative":[17],"analysis":[18,62],"heterogeneous":[20],"data":[21,81,99],"sources":[22],"can":[23],"reveal":[24],"higher":[25],"level":[26],"interactions":[27],"that":[28,49],"cannot":[29],"be":[30],"detected":[31],"based":[32,59],"on":[33,60],"individual":[34],"observations.":[35],"standard":[37],"integration":[38,82],"task":[39],"in":[40,52,94],"cancer":[41,95],"studies":[42],"is":[43],"identify":[45],"altered":[46],"genomic":[47,80],"regions":[48],"induce":[50],"changes":[51],"the":[53,56],"expression":[54,66],"associated":[57],"genes":[58],"joint":[61],"gene":[65,96],"copy":[68],"number":[69],"measurements.":[71],"In":[72],"this":[73],"review,":[74],"we":[75],"highlight":[76],"common":[77],"approaches":[78],"provide":[84],"a":[85],"transparent":[86],"benchmarking":[87,102],"procedure":[88],"quantitatively":[90],"compare":[91],"method":[92],"performances":[93],"prioritization.":[97],"Algorithms,":[98],"sets":[100],"results":[103],"at":[106],"http://intcomp.r-forge.r-project.org.":[107]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":5},{"year":2016,"cited_by_count":7},{"year":2015,"cited_by_count":6},{"year":2014,"cited_by_count":6},{"year":2013,"cited_by_count":6},{"year":2012,"cited_by_count":2}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
